Wall clock time and date at job start Tue Mar 31 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99768 * 2 1 4 4 H 1.48505 * 109.47086 * 275.40848 * 3 2 1 5 5 H 1.48494 * 109.47476 * 35.40920 * 3 2 1 6 6 H 1.48499 * 109.46983 * 155.41215 * 3 2 1 7 7 C 1.39924 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00222 * 341.73855 * 7 2 1 9 9 C 1.41434 * 120.00260 * 161.73315 * 7 2 1 10 10 C 1.40792 * 120.17930 * 330.18112 * 9 7 2 11 11 C 1.37701 * 120.04293 * 179.97438 * 10 9 7 12 12 C 1.38383 * 120.40696 * 0.02562 * 11 10 9 13 13 C 1.39885 * 120.35557 * 359.74282 * 12 11 10 14 14 C 1.47876 * 120.02341 * 180.25444 * 13 12 11 15 15 N 1.31951 * 126.56232 * 359.94729 * 14 13 12 16 16 C 1.34936 * 105.51159 * 179.85987 * 15 14 13 17 17 C 1.48449 * 126.31919 * 180.14796 * 16 15 14 18 18 C 1.39312 * 120.12036 * 0.02562 * 17 16 15 19 19 C 1.38024 * 119.88326 * 179.69415 * 18 17 16 20 20 C 1.38322 * 120.11291 * 0.60576 * 19 18 17 21 21 C 1.38315 * 120.23979 * 359.67241 * 20 19 18 22 22 C 1.38022 * 120.12299 * 0.02562 * 21 20 19 23 23 N 1.30837 * 107.36639 * 0.40370 * 16 15 14 24 24 O 1.21275 * 110.32724 * 359.74442 * 23 16 15 25 25 C 1.39014 * 119.95156 * 0.48695 * 13 12 11 26 26 H 0.97000 * 120.00119 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.97868 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.80273 * 180.02562 * 11 10 9 29 29 H 1.07997 * 119.81748 * 179.97438 * 12 11 10 30 30 H 1.08004 * 120.05505 * 359.97438 * 18 17 16 31 31 H 1.07998 * 119.94247 * 180.31809 * 19 18 17 32 32 H 1.08000 * 119.87338 * 179.69467 * 20 19 18 33 33 H 1.08003 * 119.93706 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.05976 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.20317 * 179.78889 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3754 2.1125 -1.3939 5 1 1.5016 2.6170 0.8112 6 1 3.5923 1.4099 0.5826 7 6 2.0079 -1.2118 0.0005 8 1 1.5088 -2.1234 0.2940 9 6 3.3688 -1.2428 -0.3834 10 6 3.8625 -0.3109 -1.3161 11 6 5.1881 -0.3433 -1.6875 12 6 6.0433 -1.2890 -1.1495 13 6 5.5718 -2.2199 -0.2178 14 6 6.4933 -3.2236 0.3566 15 7 7.7772 -3.3590 0.0838 16 6 8.1995 -4.3939 0.8397 17 6 9.5793 -4.9391 0.8919 18 6 10.5844 -4.3737 0.1103 19 6 11.8670 -4.8804 0.1675 20 6 12.1524 -5.9557 0.9895 21 6 11.1570 -6.5244 1.7633 22 6 9.8724 -6.0216 1.7184 23 7 7.1673 -4.8318 1.5140 24 8 6.1826 -4.1748 1.2507 25 6 4.2352 -2.2036 0.1640 26 1 -0.4850 0.8400 -0.0004 27 1 3.2013 0.4305 -1.7400 28 1 5.5628 0.3736 -2.4030 29 1 7.0811 -1.3061 -1.4479 30 1 10.3614 -3.5375 -0.5358 31 1 12.6481 -4.4396 -0.4342 32 1 13.1563 -6.3522 1.0275 33 1 11.3854 -7.3636 2.4037 34 1 9.0960 -6.4663 2.3233 35 1 3.8661 -2.9226 0.8804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171777285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:16 Heat of formation + Delta-G solvation = 108.593272 kcal Electronic energy + Delta-G solvation = -20962.241241 eV Core-core repulsion = 17699.844152 eV Total energy + Delta-G solvation = -3262.397089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.11852 -39.28226 -38.06687 -35.56152 -34.01631 -32.90890 -31.18813 -30.90404 -30.57655 -29.43906 -25.49167 -24.53799 -24.14295 -22.50355 -22.10534 -20.67148 -20.49672 -18.29015 -17.73981 -17.15785 -16.54617 -16.03245 -15.67089 -15.07330 -14.80558 -14.44685 -14.03587 -13.69359 -13.61219 -13.26170 -12.99644 -12.83989 -12.33032 -12.26467 -11.89694 -11.59846 -11.59540 -11.36428 -11.12101 -11.06678 -10.79563 -10.64325 -10.18103 -10.00459 -9.82195 -9.32780 -9.17502 -8.81179 -7.96171 -7.78328 -7.08951 -4.65791 0.64618 1.14464 1.18246 2.34495 2.40773 2.90954 3.01801 3.11327 3.13584 3.22255 3.62967 3.69087 3.85567 4.18556 4.32325 4.73381 4.77886 4.87671 5.15182 5.18613 5.24607 5.40347 5.61388 5.79710 5.81438 5.86939 6.01168 6.12644 6.21766 6.25472 6.31347 6.36411 6.48845 6.61980 6.69893 6.82509 7.09517 7.28708 7.41068 7.61089 7.76765 8.17491 8.37656 8.42840 8.60821 9.92869 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.003132 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.474094 B = 8937.700000 C = 9444.599360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.084 3.916 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.442 4.442 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.212 4.212 11 C -0.082 4.082 12 C -0.186 4.186 13 C -0.013 4.013 14 C 0.264 3.736 15 N -0.486 5.486 16 C 0.204 3.796 17 C -0.012 4.012 18 C -0.077 4.077 19 C -0.124 4.124 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.087 4.087 23 N -0.390 5.390 24 O 0.080 5.920 25 C -0.159 4.159 26 H 0.288 0.712 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.909 -5.869 0.824 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.165 1.165 7 C -0.470 4.470 8 H 0.113 0.887 9 C 0.082 3.918 10 C -0.232 4.232 11 C -0.100 4.100 12 C -0.207 4.207 13 C -0.016 4.016 14 C 0.049 3.951 15 N -0.219 5.219 16 C -0.066 4.066 17 C -0.014 4.014 18 C -0.096 4.096 19 C -0.142 4.142 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.107 4.107 23 N -0.098 5.098 24 O 0.021 5.979 25 C -0.180 4.180 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 17.030 -6.375 1.215 18.224 hybrid contribution -0.033 0.819 -0.023 0.820 sum 16.997 -5.556 1.192 17.921 Atomic orbital electron populations 1.69682 1.08121 1.30555 1.33979 1.26166 0.94765 1.01787 0.90899 0.86351 0.81460 0.79746 0.79055 1.19375 1.21508 1.16542 1.19492 0.92786 0.96406 1.38311 0.88687 1.17581 0.93120 0.90848 0.90253 1.21293 0.95707 1.03920 1.02263 1.20551 0.93502 0.97269 0.98683 1.20373 0.99291 0.98778 1.02266 1.17106 0.90742 0.93655 1.00064 1.26898 0.90279 0.90354 0.87564 1.72213 1.07994 1.17298 1.24348 1.23805 0.95599 0.93122 0.94045 1.17403 0.87238 0.96964 0.99774 1.21275 0.91902 0.99216 0.97253 1.21124 0.96344 0.97084 0.99653 1.21306 0.99366 0.95975 0.95965 1.21067 0.92562 1.00518 1.00054 1.21211 0.97331 0.94745 0.97367 1.74794 0.94820 1.17550 1.22659 1.85365 1.31001 1.34282 1.47235 1.21226 0.90674 1.03383 1.02718 0.90172 0.87521 0.87594 0.87059 0.84561 0.85312 0.85679 0.85403 0.85176 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.20 13.93 55.55 0.77 -19.43 16 2 C 0.08 2.06 5.40 -17.35 -0.09 1.97 16 3 Si 0.91 19.36 24.52 -169.99 -4.17 15.19 16 4 H -0.27 -5.48 6.71 56.52 0.38 -5.10 16 5 H -0.29 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.24 -5.27 6.86 56.52 0.39 -4.89 16 7 C -0.44 -11.15 9.57 -37.73 -0.36 -11.51 16 8 H 0.10 2.51 8.06 -52.49 -0.42 2.08 16 9 C 0.09 2.00 5.10 -106.87 -0.55 1.45 16 10 C -0.21 -4.67 7.17 -38.81 -0.28 -4.95 16 11 C -0.08 -1.61 10.01 -39.72 -0.40 -2.01 16 12 C -0.19 -3.67 9.71 -38.91 -0.38 -4.05 16 13 C -0.01 -0.27 5.87 -105.05 -0.62 -0.89 16 14 C 0.26 5.16 8.00 -13.80 -0.11 5.05 16 15 N -0.49 -9.11 10.93 -10.22 -0.11 -9.22 16 16 C 0.20 3.59 7.79 -156.30 -1.22 2.37 16 17 C -0.01 -0.17 5.88 -104.89 -0.62 -0.79 16 18 C -0.08 -0.95 9.70 -39.26 -0.38 -1.33 16 19 C -0.12 -1.20 10.03 -39.63 -0.40 -1.59 16 20 C -0.11 -0.94 10.04 -39.52 -0.40 -1.33 16 21 C -0.12 -1.18 10.03 -39.63 -0.40 -1.58 16 22 C -0.09 -1.06 9.69 -39.26 -0.38 -1.44 16 23 N -0.39 -7.14 11.84 31.20 0.37 -6.77 16 24 O 0.08 1.54 11.10 16.68 0.19 1.72 16 25 C -0.16 -3.45 9.47 -38.45 -0.36 -3.82 16 26 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 27 H 0.11 2.32 4.72 -52.48 -0.25 2.08 16 28 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.11 2.03 7.86 -52.49 -0.41 1.62 16 30 H 0.14 1.70 7.87 -52.48 -0.41 1.29 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 34 H 0.13 1.57 7.87 -52.49 -0.41 1.15 16 35 H 0.12 2.38 7.93 -52.49 -0.42 1.97 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -26.45 311.28 -8.38 -34.83 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.19 Total: 3.46 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -6.93 Total: -24.47 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 1.03 Total: -35.42 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: 0.19 Total: 1.72 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.17 Total: 15.19 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.45 -8.38 -34.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171777285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.419 kcal (2) G-P(sol) polarization free energy of solvation -26.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds