Wall clock time and date at job start Tue Mar 31 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99768 * 2 1 4 4 H 1.48505 * 109.47086 * 275.40848 * 3 2 1 5 5 H 1.48494 * 109.47476 * 35.40920 * 3 2 1 6 6 H 1.48499 * 109.46983 * 155.41215 * 3 2 1 7 7 C 1.39924 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00222 * 341.73855 * 7 2 1 9 9 C 1.41434 * 120.00260 * 161.73315 * 7 2 1 10 10 C 1.40792 * 120.17930 * 330.18112 * 9 7 2 11 11 C 1.37701 * 120.04293 * 179.97438 * 10 9 7 12 12 C 1.38383 * 120.40696 * 0.02562 * 11 10 9 13 13 C 1.39885 * 120.35557 * 359.74282 * 12 11 10 14 14 C 1.47876 * 120.02341 * 180.25444 * 13 12 11 15 15 N 1.31951 * 126.56232 * 359.94729 * 14 13 12 16 16 C 1.34936 * 105.51159 * 179.85987 * 15 14 13 17 17 C 1.48449 * 126.31919 * 180.14796 * 16 15 14 18 18 C 1.39312 * 120.12036 * 0.02562 * 17 16 15 19 19 C 1.38024 * 119.88326 * 179.69415 * 18 17 16 20 20 C 1.38322 * 120.11291 * 0.60576 * 19 18 17 21 21 C 1.38315 * 120.23979 * 359.67241 * 20 19 18 22 22 C 1.38022 * 120.12299 * 0.02562 * 21 20 19 23 23 N 1.30837 * 107.36639 * 0.40370 * 16 15 14 24 24 O 1.21275 * 110.32724 * 359.74442 * 23 16 15 25 25 C 1.39014 * 119.95156 * 0.48695 * 13 12 11 26 26 H 0.97000 * 120.00119 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.97868 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.80273 * 180.02562 * 11 10 9 29 29 H 1.07997 * 119.81748 * 179.97438 * 12 11 10 30 30 H 1.08004 * 120.05505 * 359.97438 * 18 17 16 31 31 H 1.07998 * 119.94247 * 180.31809 * 19 18 17 32 32 H 1.08000 * 119.87338 * 179.69467 * 20 19 18 33 33 H 1.08003 * 119.93706 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.05976 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.20317 * 179.78889 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3754 2.1125 -1.3939 5 1 1.5016 2.6170 0.8112 6 1 3.5923 1.4099 0.5826 7 6 2.0079 -1.2118 0.0005 8 1 1.5088 -2.1234 0.2940 9 6 3.3688 -1.2428 -0.3834 10 6 3.8625 -0.3109 -1.3161 11 6 5.1881 -0.3433 -1.6875 12 6 6.0433 -1.2890 -1.1495 13 6 5.5718 -2.2199 -0.2178 14 6 6.4933 -3.2236 0.3566 15 7 7.7772 -3.3590 0.0838 16 6 8.1995 -4.3939 0.8397 17 6 9.5793 -4.9391 0.8919 18 6 10.5844 -4.3737 0.1103 19 6 11.8670 -4.8804 0.1675 20 6 12.1524 -5.9557 0.9895 21 6 11.1570 -6.5244 1.7633 22 6 9.8724 -6.0216 1.7184 23 7 7.1673 -4.8318 1.5140 24 8 6.1826 -4.1748 1.2507 25 6 4.2352 -2.2036 0.1640 26 1 -0.4850 0.8400 -0.0004 27 1 3.2013 0.4305 -1.7400 28 1 5.5628 0.3736 -2.4030 29 1 7.0811 -1.3061 -1.4479 30 1 10.3614 -3.5375 -0.5358 31 1 12.6481 -4.4396 -0.4342 32 1 13.1563 -6.3522 1.0275 33 1 11.3854 -7.3636 2.4037 34 1 9.0960 -6.4663 2.3233 35 1 3.8661 -2.9226 0.8804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171777285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:16 Heat of formation + Delta-G solvation = 94.662387 kcal Electronic energy + Delta-G solvation = -20962.845329 eV Core-core repulsion = 17699.844152 eV Total energy + Delta-G solvation = -3263.001177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.55960 -40.14012 -39.77337 -36.95914 -35.74068 -34.39783 -32.34606 -32.07936 -31.95457 -30.90846 -27.25108 -25.84809 -25.52589 -23.65039 -23.21364 -22.35632 -21.83725 -19.83000 -19.20086 -18.56653 -17.79224 -17.59174 -16.70278 -16.55287 -16.30064 -15.69401 -15.54062 -14.72776 -14.67785 -14.47625 -14.40069 -14.23742 -14.03950 -13.72306 -13.56126 -13.03127 -12.81135 -12.72079 -12.48381 -12.38766 -12.30091 -11.96657 -11.77687 -11.60292 -11.57638 -11.05675 -9.98710 -9.82883 -9.67094 -9.43679 -8.91112 -6.55277 -0.60119 -0.18700 0.37526 0.70308 0.95369 1.29239 1.43746 1.45273 1.54599 1.61871 2.12297 2.36273 2.56013 2.81335 2.83760 3.38521 3.75943 3.97830 4.00101 4.17889 4.24449 4.35882 4.38823 4.46931 4.51241 4.61729 4.66916 4.83955 4.86598 4.92860 5.04943 5.10516 5.37176 5.42213 5.45254 5.48601 5.60622 5.71071 5.82039 5.92515 6.05434 6.28632 6.59879 6.74248 6.95424 8.16917 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.003132 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.474094 B = 8937.700000 C = 9444.599360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.049 3.951 3 Si 0.959 3.041 4 H -0.247 1.247 5 H -0.279 1.279 6 H -0.249 1.249 7 C -0.480 4.480 8 H 0.060 0.940 9 C 0.072 3.928 10 C -0.217 4.217 11 C -0.077 4.077 12 C -0.168 4.168 13 C -0.015 4.015 14 C 0.254 3.746 15 N -0.486 5.486 16 C 0.211 3.789 17 C -0.051 4.051 18 C -0.087 4.087 19 C -0.120 4.120 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.098 4.098 23 N -0.403 5.403 24 O 0.066 5.934 25 C -0.171 4.171 26 H 0.296 0.704 27 H 0.111 0.889 28 H 0.148 0.852 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.123 0.877 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.472 -5.569 -0.063 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.167 4.167 3 Si 0.782 3.218 4 H -0.172 1.172 5 H -0.206 1.206 6 H -0.173 1.173 7 C -0.509 4.509 8 H 0.078 0.922 9 C 0.069 3.931 10 C -0.237 4.237 11 C -0.095 4.095 12 C -0.189 4.189 13 C -0.018 4.018 14 C 0.038 3.962 15 N -0.219 5.219 16 C -0.059 4.059 17 C -0.053 4.053 18 C -0.107 4.107 19 C -0.138 4.138 20 C -0.111 4.111 21 C -0.138 4.138 22 C -0.118 4.118 23 N -0.114 5.114 24 O 0.011 5.989 25 C -0.193 4.193 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.166 0.834 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.177 0.823 32 H 0.182 0.818 33 H 0.175 0.825 34 H 0.141 0.859 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 21.571 -6.080 0.323 22.414 hybrid contribution -1.097 0.519 0.238 1.236 sum 20.474 -5.561 0.560 21.224 Atomic orbital electron populations 1.69714 1.09283 1.31712 1.36237 1.26838 0.95337 1.04246 0.90266 0.85577 0.79797 0.76366 0.80091 1.17222 1.20594 1.17267 1.19446 0.94120 0.95931 1.41407 0.92176 1.17682 0.92577 0.91965 0.90870 1.21476 0.97006 1.03444 1.01756 1.20967 0.92268 0.97582 0.98650 1.20771 1.00350 0.97347 1.00401 1.17216 0.90305 0.94079 1.00158 1.26778 0.90612 0.90651 0.88169 1.72195 1.07410 1.17787 1.24546 1.24453 0.96750 0.92099 0.92561 1.17628 0.86101 0.99014 1.02581 1.21365 0.92843 0.99368 0.97141 1.21500 0.95635 0.96992 0.99646 1.21809 1.00802 0.94603 0.93860 1.21447 0.91350 1.00907 1.00114 1.21313 0.98718 0.94506 0.97242 1.74786 0.95017 1.17999 1.23599 1.85353 1.31621 1.34481 1.47460 1.21252 0.91414 1.03442 1.03179 0.89383 0.87091 0.83385 0.84807 0.85252 0.82298 0.81788 0.82452 0.85928 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.52 13.93 21.82 0.30 -44.22 16 2 C 0.05 2.48 5.40 85.25 0.46 2.94 16 3 Si 0.96 39.70 24.52 68.60 1.68 41.38 16 4 H -0.25 -9.36 6.71 99.48 0.67 -8.70 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.25 -10.47 6.86 99.48 0.68 -9.78 16 7 C -0.48 -25.67 9.57 23.47 0.22 -25.45 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 9 C 0.07 3.45 5.10 -21.32 -0.11 3.34 16 10 C -0.22 -9.30 7.17 22.77 0.16 -9.14 16 11 C -0.08 -2.79 10.01 22.18 0.22 -2.57 16 12 C -0.17 -6.22 9.71 22.70 0.22 -6.00 16 13 C -0.02 -0.62 5.87 -20.14 -0.12 -0.74 16 14 C 0.25 9.96 8.00 87.31 0.70 10.65 16 15 N -0.49 -17.99 10.93 -302.34 -3.31 -21.29 16 16 C 0.21 7.42 7.79 137.37 1.07 8.49 16 17 C -0.05 -1.44 5.88 -20.04 -0.12 -1.56 16 18 C -0.09 -2.00 9.70 22.48 0.22 -1.79 16 19 C -0.12 -1.85 10.03 22.24 0.22 -1.62 16 20 C -0.09 -1.17 10.04 22.31 0.22 -0.94 16 21 C -0.12 -1.87 10.03 22.24 0.22 -1.65 16 22 C -0.10 -2.27 9.69 22.48 0.22 -2.05 16 23 N -0.40 -15.08 11.84 -57.79 -0.68 -15.77 16 24 O 0.07 2.61 11.10 69.75 0.77 3.39 16 25 C -0.17 -7.71 9.47 23.00 0.22 -7.49 16 26 H 0.30 13.95 8.30 -92.71 -0.77 13.18 16 27 H 0.11 4.65 4.72 -2.91 -0.01 4.63 16 28 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 29 H 0.13 4.40 7.86 -2.91 -0.02 4.38 16 30 H 0.13 3.05 7.87 -2.91 -0.02 3.03 16 31 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.12 2.92 7.87 -2.91 -0.02 2.90 16 35 H 0.11 4.96 7.93 -2.91 -0.02 4.93 16 Total: -1.00 -60.36 311.28 3.87 -56.48 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.07 Total: 15.61 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 4.04 Total: -35.58 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.69 Total: -81.28 kcal Atomic # 8 Polarization: 2.61 SS G_CDS: 0.77 Total: 3.39 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.68 Total: 41.38 kcal Total: -60.36 3.87 -56.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171777285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.144 kcal (2) G-P(sol) polarization free energy of solvation -60.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds