Wall clock time and date at job start Tue Mar 31 2020 06:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91459 * 2 1 4 4 C 1.31778 * 117.12548 * 180.02562 * 3 2 1 5 5 C 1.33643 * 114.49767 * 0.02562 * 4 3 2 6 6 C 1.50708 * 126.03646 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.46986 * 89.99939 * 6 5 4 8 8 C 1.46903 * 110.99982 * 189.99925 * 7 6 5 9 9 C 1.50697 * 109.46739 * 75.70927 * 8 7 6 10 10 H 1.07997 * 120.00566 * 5.05305 * 9 8 7 11 11 C 1.37884 * 119.99592 * 185.05578 * 9 8 7 12 12 N 1.31517 * 119.99705 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99705 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47136 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46835 * 120.00402 * 13 11 9 16 16 H 1.48497 * 109.46915 * 239.99611 * 13 11 9 17 17 C 1.46905 * 110.99658 * 66.04668 * 7 6 5 18 18 C 1.50703 * 109.46724 * 195.85676 * 17 7 6 19 19 C 1.34513 * 125.78885 * 90.00375 * 18 17 7 20 20 C 1.41379 * 106.84309 * 179.97438 * 19 18 17 21 21 C 1.34518 * 106.83898 * 359.97438 * 20 19 18 22 22 O 1.34302 * 108.42013 * 359.73896 * 21 20 19 23 23 S 1.70976 * 124.91857 * 180.31986 * 2 1 3 24 24 H 1.09001 * 109.47023 * 89.97085 * 1 2 3 25 25 H 1.09000 * 109.47194 * 209.97367 * 1 2 3 26 26 H 1.08996 * 109.47123 * 329.96811 * 1 2 3 27 27 H 1.08001 * 122.75666 * 180.02562 * 4 3 2 28 28 H 1.08999 * 109.46856 * 330.00421 * 6 5 4 29 29 H 1.08997 * 109.47167 * 209.99833 * 6 5 4 30 30 H 1.09000 * 109.46759 * 195.70773 * 8 7 6 31 31 H 1.08995 * 109.46965 * 315.70840 * 8 7 6 32 32 H 0.96998 * 119.99577 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.47464 * 315.85693 * 17 7 6 34 34 H 1.09001 * 109.47125 * 75.85867 * 17 7 6 35 35 H 1.08001 * 126.57771 * 0.03050 * 19 18 17 36 36 H 1.08006 * 126.58301 * 179.97438 * 20 19 18 37 37 H 1.08001 * 125.78766 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0015 6 6 5.3575 -0.8994 -0.0029 7 7 5.8206 -1.0622 1.3817 8 6 7.2666 -1.3170 1.4267 9 6 8.0112 -0.0318 1.1724 10 1 7.4685 0.8969 1.0762 11 6 9.3856 -0.0416 1.0623 12 7 10.0466 -1.1727 1.1788 13 14 10.3086 1.5514 0.7464 14 1 9.3412 2.6744 0.6556 15 1 11.2563 1.8039 1.8615 16 1 11.0623 1.4423 -0.5284 17 6 5.0764 -2.1296 2.0636 18 6 5.2858 -2.0163 3.5517 19 6 4.5243 -1.3037 4.4012 20 6 5.0761 -1.4785 5.6911 21 6 6.1415 -2.2880 5.5527 22 8 6.2600 -2.6155 4.2556 23 16 2.4857 -1.4019 -0.0078 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 4.2532 1.7001 -0.0002 28 1 5.9945 -0.1794 -0.5167 29 1 5.4054 -1.8591 -0.5172 30 1 7.5367 -1.7053 2.4087 31 1 7.5307 -2.0474 0.6620 32 1 11.0134 -1.1796 1.1010 33 1 4.0144 -2.0336 1.8377 34 1 5.4349 -3.0996 1.7190 35 1 3.6572 -0.7123 4.1468 36 1 4.7121 -1.0453 6.6110 37 1 6.7892 -2.6214 6.3501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176290813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:03 Heat of formation + Delta-G solvation = 65.693475 kcal Electronic energy + Delta-G solvation = -20807.000301 eV Core-core repulsion = 17678.186889 eV Total energy + Delta-G solvation = -3128.813412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.04356 -39.51502 -36.98695 -32.84621 -32.57783 -32.18422 -30.38080 -29.05952 -26.95338 -25.37058 -24.05634 -23.04458 -21.35947 -20.96570 -19.90303 -18.92219 -17.83584 -16.86488 -16.47457 -15.71544 -15.25052 -14.93794 -14.61763 -14.47261 -14.07707 -13.85450 -13.38918 -13.28393 -12.60525 -12.54965 -12.34670 -12.32457 -12.11638 -11.97564 -11.74917 -11.49227 -11.19895 -10.82269 -10.65396 -10.60107 -9.99094 -9.48842 -9.45363 -9.34640 -9.02425 -8.56531 -8.45008 -7.99907 -7.47623 -6.05008 -4.06865 0.87720 1.47070 1.89273 2.22068 3.02451 3.10024 3.29607 3.37563 3.42443 3.50575 4.27335 4.40638 4.92887 5.09015 5.13363 5.25465 5.30589 5.32725 5.40531 5.44855 5.46072 5.54062 5.74834 5.76767 5.80732 6.15476 6.23121 6.26998 6.36418 6.44731 6.55738 6.94488 7.07806 7.20688 7.64849 7.74682 7.90822 7.95066 8.05091 8.41431 9.00963 9.57496 11.05331 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011839 B = 0.005921 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.436617 B = 4728.171034 C = 6373.421544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.032 3.968 3 N -0.472 5.472 4 C 0.046 3.954 5 C -0.189 4.189 6 C 0.137 3.863 7 N -0.524 5.524 8 C 0.190 3.810 9 C -0.506 4.506 10 H 0.065 0.935 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.896 3.104 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.123 3.877 18 C 0.022 3.978 19 C -0.206 4.206 20 C -0.218 4.218 21 C -0.047 4.047 22 O -0.169 6.169 23 S 0.091 5.909 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.178 0.822 28 H 0.112 0.888 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.001 0.999 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 -2.631 0.888 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.246 4.246 3 N -0.186 5.186 4 C -0.104 4.104 5 C -0.310 4.310 6 C 0.007 3.993 7 N -0.250 5.250 8 C 0.066 3.934 9 C -0.545 4.545 10 H 0.083 0.917 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.005 4.005 18 C -0.029 4.029 19 C -0.226 4.226 20 C -0.237 4.237 21 C -0.115 4.115 22 O -0.064 6.064 23 S 0.344 5.656 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.195 0.805 28 H 0.130 0.870 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -16.091 -2.996 0.979 16.396 hybrid contribution 1.402 0.985 -0.232 1.730 sum -14.688 -2.010 0.747 14.844 Atomic orbital electron populations 1.20374 0.85662 1.03877 1.03462 1.26909 1.01440 0.91144 1.05081 1.66278 1.05209 1.31523 1.15629 1.21712 0.90492 0.96317 1.01912 1.26163 0.99508 0.95833 1.09473 1.20452 0.87272 1.00326 0.91285 1.62212 1.07933 1.42040 1.12788 1.19885 0.79066 0.97061 0.97422 1.21151 0.91027 0.93891 1.48406 0.91685 1.24980 0.97642 0.96364 0.95487 1.69972 1.07743 1.25443 1.50454 0.86466 0.79805 0.83622 0.77707 1.19584 1.21051 1.21084 1.20613 0.99360 0.94890 0.85644 1.22198 0.88933 0.97722 0.94070 1.21375 1.03905 1.04821 0.92457 1.21705 0.99152 1.04241 0.98625 1.23885 1.00901 1.02565 0.84119 1.84080 1.45528 1.58112 1.18687 1.83871 0.98891 1.13323 1.69490 0.89998 0.90402 0.89570 0.80476 0.87042 0.94301 0.94452 0.98154 0.92957 0.89213 0.93851 0.84273 0.84094 0.78742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.46 36.01 0.38 -0.27 16 2 C 0.03 0.42 7.39 -13.46 -0.10 0.32 16 3 N -0.47 -7.35 10.54 -11.86 -0.13 -7.47 16 4 C 0.05 0.74 11.25 -19.19 -0.22 0.52 16 5 C -0.19 -3.01 5.36 -35.91 -0.19 -3.20 16 6 C 0.14 2.48 5.32 -4.97 -0.03 2.45 16 7 N -0.52 -10.95 4.36 -238.95 -1.04 -11.99 16 8 C 0.19 4.83 4.59 -4.98 -0.02 4.81 16 9 C -0.51 -13.91 8.55 -34.44 -0.29 -14.20 16 10 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 13 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.12 2.27 5.37 -4.97 -0.03 2.25 16 18 C 0.02 0.42 6.12 -35.62 -0.22 0.20 16 19 C -0.21 -3.61 10.81 -39.70 -0.43 -4.04 16 20 C -0.22 -3.45 10.91 -39.70 -0.43 -3.88 16 21 C -0.05 -0.75 12.09 29.42 0.36 -0.40 16 22 O -0.17 -3.35 9.80 5.71 0.06 -3.30 16 23 S 0.09 1.19 21.43 -107.50 -2.30 -1.12 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.18 2.78 8.06 -52.49 -0.42 2.36 16 28 H 0.11 2.15 7.44 -51.93 -0.39 1.76 16 29 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 30 H 0.04 1.04 6.46 -51.93 -0.34 0.71 16 31 H 0.00 0.02 8.00 -51.93 -0.42 -0.40 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.09 1.46 5.33 -51.93 -0.28 1.18 16 34 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 35 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.14 1.81 8.06 -52.48 -0.42 1.38 16 37 H 0.20 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -31.69 330.14 -8.81 -40.49 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.76 Total: 1.50 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -1.32 Total: -13.95 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.43 Total: -45.08 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: 0.06 Total: -3.30 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.30 Total: -1.12 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.69 -8.81 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176290813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.186 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds