Wall clock time and date at job start Tue Mar 31 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.42103 * 109.47078 * 296.39075 * 12 11 10 14 14 C 1.81393 * 103.00232 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47513 * 179.97438 * 14 12 11 16 16 C 1.35099 * 125.68946 * 269.72213 * 15 14 12 17 17 N 1.36837 * 107.17612 * 179.89772 * 16 15 14 18 18 C 1.36491 * 132.56615 * 180.09788 * 17 16 15 19 19 C 1.34952 * 120.61000 * 180.33143 * 18 17 16 20 20 C 1.40466 * 120.29839 * 359.95570 * 19 18 17 21 21 C 1.36026 * 119.69587 * 0.02562 * 20 19 18 22 22 C 1.37074 * 107.00408 * 0.35604 * 17 16 15 23 23 N 1.32561 * 108.03516 * 359.77826 * 22 17 16 24 24 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 26 26 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 27 27 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 28 28 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 29 29 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 30 30 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 31 31 H 1.09001 * 109.47259 * 300.00509 * 14 12 11 32 32 H 1.09010 * 109.47052 * 60.00011 * 14 12 11 33 33 H 1.07995 * 126.40975 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.69568 * 0.32695 * 18 17 16 35 35 H 1.07998 * 119.84522 * 179.97438 * 19 18 17 36 36 H 1.08006 * 120.15119 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.33335 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 16 6.1564 -4.3466 0.0028 13 8 5.7519 -4.9916 1.2027 14 6 7.9588 -4.1422 0.0035 15 6 8.6181 -5.4973 0.0047 16 6 8.9673 -6.2030 1.1026 17 7 9.5312 -7.3720 0.6691 18 6 10.0540 -8.4456 1.3301 19 6 10.5645 -9.4913 0.6468 20 6 10.5635 -9.4884 -0.7579 21 6 10.0452 -8.4249 -1.4292 22 6 9.5161 -7.3404 -0.7012 23 7 8.9598 -6.1981 -1.0793 24 1 -0.4849 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8753 -0.6803 -0.8888 27 1 3.6587 -3.1502 -0.8892 28 1 3.6580 -3.1505 0.8907 29 1 5.9157 -2.1223 -0.8873 30 1 5.9142 -2.1228 0.8927 31 1 8.2622 -3.5908 -0.8864 32 1 8.2615 -3.5904 0.8936 33 1 8.8257 -5.9018 2.1300 34 1 10.0592 -8.4583 2.4100 35 1 10.9755 -10.3343 1.1823 36 1 10.9731 -10.3264 -1.3024 37 1 10.0387 -8.4120 -2.5091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176544342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:28 Heat of formation + Delta-G solvation = 43.702840 kcal Electronic energy + Delta-G solvation = -19487.394097 eV Core-core repulsion = 16357.627099 eV Total energy + Delta-G solvation = -3129.766998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.06439 -37.83067 -35.48296 -34.52097 -33.96644 -32.05044 -32.01634 -29.51255 -28.14901 -27.57073 -23.69376 -23.17955 -22.99191 -21.04458 -20.09432 -18.08119 -17.42585 -17.10150 -16.67786 -16.26691 -16.06014 -15.13871 -15.07026 -14.82140 -14.43784 -14.39267 -14.04096 -13.50176 -13.17831 -12.77255 -12.67363 -12.20347 -12.13564 -12.06081 -12.01958 -11.53526 -11.35532 -11.12143 -10.81589 -10.55589 -10.35012 -9.92966 -9.75963 -9.61455 -9.17931 -8.84681 -8.51988 -8.18217 -7.90882 -6.02155 -4.00201 0.38826 0.93977 1.54192 2.29125 2.65692 2.85439 3.24092 3.31535 3.38930 3.42675 3.75422 4.00359 4.10963 4.37097 4.46712 4.47028 4.70677 4.86383 4.96712 5.11779 5.30990 5.37745 5.41570 5.45719 5.52730 5.58745 5.68784 5.80069 6.11053 6.13491 6.33101 6.41363 6.54437 6.76028 6.87430 7.28843 7.42022 7.59872 7.80612 8.56009 9.03182 9.60086 11.11358 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.050024 B = 0.002518 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.593970 B =11115.924270 C =11192.758001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.085 4.085 11 C -0.441 4.441 12 S 1.246 4.754 13 O -0.843 6.843 14 C -0.374 4.374 15 C 0.086 3.914 16 C -0.087 4.087 17 N -0.362 5.362 18 C 0.058 3.942 19 C -0.146 4.146 20 C -0.104 4.104 21 C -0.077 4.077 22 C 0.222 3.778 23 N -0.481 5.481 24 H 0.263 0.737 25 H 0.014 0.986 26 H 0.015 0.985 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.098 0.902 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.631 -18.466 -2.116 31.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.580 4.580 12 S 1.445 4.555 13 O -0.838 6.838 14 C -0.509 4.509 15 C -0.046 4.046 16 C -0.219 4.219 17 N -0.034 5.034 18 C -0.064 4.064 19 C -0.167 4.167 20 C -0.128 4.128 21 C -0.097 4.097 22 C -0.021 4.021 23 N -0.202 5.202 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.117 0.883 33 H 0.198 0.802 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 24.828 -18.891 -2.825 31.325 hybrid contribution 1.235 1.948 2.826 3.647 sum 26.063 -16.943 0.000 31.086 Atomic orbital electron populations 1.69916 1.06279 1.26852 1.51198 1.25040 0.94747 0.99172 0.94616 0.86767 0.80311 0.83628 0.78507 1.20173 1.21427 1.19154 1.21176 0.89504 0.94584 1.50728 0.90888 1.19574 0.97049 0.91746 0.96354 1.21122 0.88230 1.01094 1.01950 1.27750 1.05980 1.17112 1.07120 1.71102 0.83849 0.88546 1.12035 1.93084 1.74819 1.64773 1.51106 1.26180 1.20825 0.95399 1.08492 1.19770 1.00697 0.95860 0.88308 1.22456 1.10474 0.87680 1.01301 1.42779 1.38119 1.13469 1.09001 1.21654 0.98890 0.86910 0.98990 1.20810 1.02551 0.98432 0.94886 1.21044 0.99362 0.98500 0.93922 1.20305 0.98386 0.90258 1.00767 1.20991 1.03996 0.96775 0.80367 1.70623 1.17992 1.02821 1.28784 0.92750 0.96801 0.96671 0.91466 0.92269 0.86675 0.90070 0.84753 0.88291 0.80176 0.82071 0.83223 0.83956 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 10 C -0.09 -1.70 5.16 -26.73 -0.14 -1.84 16 11 C -0.44 -6.69 5.92 37.16 0.22 -6.47 16 12 S 1.25 16.83 13.14 -107.50 -1.41 15.42 16 13 O -0.84 -16.27 18.14 -35.23 -0.64 -16.91 16 14 C -0.37 -4.28 6.46 36.01 0.23 -4.05 16 15 C 0.09 1.14 6.32 -82.97 -0.52 0.62 16 16 C -0.09 -1.07 11.66 -16.43 -0.19 -1.26 16 17 N -0.36 -4.02 2.95 -62.66 -0.18 -4.20 16 18 C 0.06 0.43 10.95 -16.65 -0.18 0.25 16 19 C -0.15 -0.80 9.99 -39.91 -0.40 -1.20 16 20 C -0.10 -0.60 10.07 -39.54 -0.40 -1.00 16 21 C -0.08 -0.63 10.11 -39.36 -0.40 -1.03 16 22 C 0.22 2.64 7.81 -156.05 -1.22 1.42 16 23 N -0.48 -6.53 11.32 -9.01 -0.10 -6.63 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.11 1.42 8.14 -51.92 -0.42 0.99 16 30 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 31 H 0.13 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.18 1.93 8.06 -52.49 -0.42 1.50 16 34 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 36 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 37 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -39.09 331.53 -9.78 -48.87 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.00 Total: -2.77 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -3.54 Total: -28.59 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.49 Total: -38.36 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.64 Total: -16.91 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Atomic # 16 Polarization: 16.83 SS G_CDS: -1.41 Total: 15.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -39.09 -9.78 -48.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176544342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.576 kcal (2) G-P(sol) polarization free energy of solvation -39.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds