Wall clock time and date at job start Tue Mar 31 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.42103 * 109.47078 * 296.39075 * 12 11 10 14 14 C 1.81393 * 103.00232 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47513 * 179.97438 * 14 12 11 16 16 C 1.35099 * 125.68946 * 269.72213 * 15 14 12 17 17 N 1.36837 * 107.17612 * 179.89772 * 16 15 14 18 18 C 1.36491 * 132.56615 * 180.09788 * 17 16 15 19 19 C 1.34952 * 120.61000 * 180.33143 * 18 17 16 20 20 C 1.40466 * 120.29839 * 359.95570 * 19 18 17 21 21 C 1.36026 * 119.69587 * 0.02562 * 20 19 18 22 22 C 1.37074 * 107.00408 * 0.35604 * 17 16 15 23 23 N 1.32561 * 108.03516 * 359.77826 * 22 17 16 24 24 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 26 26 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 27 27 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 28 28 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 29 29 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 30 30 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 31 31 H 1.09001 * 109.47259 * 300.00509 * 14 12 11 32 32 H 1.09010 * 109.47052 * 60.00011 * 14 12 11 33 33 H 1.07995 * 126.40975 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.69568 * 0.32695 * 18 17 16 35 35 H 1.07998 * 119.84522 * 179.97438 * 19 18 17 36 36 H 1.08006 * 120.15119 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.33335 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 16 6.1564 -4.3466 0.0028 13 8 5.7519 -4.9916 1.2027 14 6 7.9588 -4.1422 0.0035 15 6 8.6181 -5.4973 0.0047 16 6 8.9673 -6.2030 1.1026 17 7 9.5312 -7.3720 0.6691 18 6 10.0540 -8.4456 1.3301 19 6 10.5645 -9.4913 0.6468 20 6 10.5635 -9.4884 -0.7579 21 6 10.0452 -8.4249 -1.4292 22 6 9.5161 -7.3404 -0.7012 23 7 8.9598 -6.1981 -1.0793 24 1 -0.4849 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8753 -0.6803 -0.8888 27 1 3.6587 -3.1502 -0.8892 28 1 3.6580 -3.1505 0.8907 29 1 5.9157 -2.1223 -0.8873 30 1 5.9142 -2.1228 0.8927 31 1 8.2622 -3.5908 -0.8864 32 1 8.2615 -3.5904 0.8936 33 1 8.8257 -5.9018 2.1300 34 1 10.0592 -8.4583 2.4100 35 1 10.9755 -10.3343 1.1823 36 1 10.9731 -10.3264 -1.3024 37 1 10.0387 -8.4120 -2.5091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176544342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:27 Heat of formation + Delta-G solvation = 16.858867 kcal Electronic energy + Delta-G solvation = -19488.558139 eV Core-core repulsion = 16357.627099 eV Total energy + Delta-G solvation = -3130.931040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.80416 -38.46059 -36.82254 -36.32499 -34.63515 -34.13351 -32.79761 -30.19935 -29.90303 -28.43566 -25.13430 -24.18118 -23.68243 -22.22868 -21.55958 -19.01522 -18.74837 -18.40694 -17.74562 -17.14872 -16.65559 -16.49784 -16.32875 -15.92270 -15.63537 -15.42388 -15.14409 -14.80002 -14.63623 -14.11507 -13.89723 -13.56117 -13.24150 -13.00918 -12.89584 -12.68099 -12.61130 -12.50094 -12.11532 -12.00303 -11.80677 -11.53136 -11.35637 -11.22576 -11.01100 -10.76389 -9.76262 -9.09625 -8.83194 -8.29548 -6.34414 -0.20491 0.22775 0.52604 1.35608 1.38617 1.50384 1.60602 1.70338 1.92749 2.36503 2.57724 2.78482 3.05404 3.17879 3.43366 3.79997 3.93855 4.05119 4.10080 4.18421 4.20545 4.24576 4.46180 4.58170 4.65916 4.80431 4.82539 4.93643 5.03094 5.09117 5.14360 5.27767 5.46731 5.51816 5.55127 5.59959 5.65900 6.08092 6.27916 6.73709 6.77822 7.30088 8.87548 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.050024 B = 0.002518 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.593970 B =11115.924270 C =11192.758001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.257 1.257 5 H -0.286 1.286 6 H -0.249 1.249 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.008 4.008 10 C -0.086 4.086 11 C -0.437 4.437 12 S 1.282 4.718 13 O -0.907 6.907 14 C -0.360 4.360 15 C 0.063 3.937 16 C -0.113 4.113 17 N -0.367 5.367 18 C 0.031 3.969 19 C -0.132 4.132 20 C -0.083 4.083 21 C -0.105 4.105 22 C 0.205 3.795 23 N -0.514 5.514 24 H 0.267 0.733 25 H 0.011 0.989 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.154 0.846 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.106 0.894 33 H 0.186 0.814 34 H 0.184 0.816 35 H 0.190 0.810 36 H 0.182 0.818 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.277 -19.063 -2.925 35.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.575 4.575 12 S 1.484 4.516 13 O -0.902 6.902 14 C -0.497 4.497 15 C -0.070 4.070 16 C -0.246 4.246 17 N -0.039 5.039 18 C -0.091 4.091 19 C -0.152 4.152 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.038 4.038 23 N -0.236 5.236 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.172 0.828 30 H 0.097 0.903 31 H 0.181 0.819 32 H 0.125 0.875 33 H 0.203 0.797 34 H 0.201 0.799 35 H 0.208 0.792 36 H 0.199 0.801 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 28.460 -19.509 -3.626 34.695 hybrid contribution 0.208 1.857 3.073 3.596 sum 28.668 -17.652 -0.553 33.671 Atomic orbital electron populations 1.70083 1.08416 1.28230 1.52629 1.26114 0.95718 1.03844 0.94024 0.85569 0.79202 0.77683 0.79638 1.18152 1.21211 1.17278 1.21575 0.92428 0.93155 1.50569 0.95276 1.19554 0.93588 0.94589 0.96954 1.20987 0.91961 0.98363 1.01175 1.27671 1.02190 1.18770 1.08898 1.70435 0.84904 0.86447 1.09826 1.92981 1.77485 1.66606 1.53157 1.25998 1.17804 0.95573 1.10311 1.20000 1.01664 0.96566 0.88739 1.22637 1.11690 0.88713 1.01537 1.42932 1.38045 1.13839 1.09034 1.22351 0.99480 0.86693 1.00536 1.21414 1.00271 0.98444 0.95079 1.21603 0.96498 0.98230 0.94304 1.20670 0.99794 0.90323 1.01699 1.21613 1.03844 0.97202 0.81180 1.70554 1.19771 1.04036 1.29262 0.92471 0.97046 0.94477 0.90320 0.95322 0.82811 0.90350 0.81943 0.87515 0.79709 0.79881 0.79244 0.80087 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.43 16 3 Si 0.96 44.97 27.47 68.60 1.88 46.85 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.25 -10.93 6.54 99.48 0.65 -10.27 16 7 C -0.54 -32.34 9.66 25.60 0.25 -32.09 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.47 5.16 30.60 0.16 -3.32 16 11 C -0.44 -12.61 5.92 71.98 0.43 -12.19 16 12 S 1.28 34.38 13.14 -56.49 -0.74 33.64 16 13 O -0.91 -36.24 18.14 -148.98 -2.70 -38.94 16 14 C -0.36 -7.83 6.46 71.24 0.46 -7.37 16 15 C 0.06 1.67 6.32 41.58 0.26 1.93 16 16 C -0.11 -2.84 11.66 83.19 0.97 -1.87 16 17 N -0.37 -7.97 2.95 -352.17 -1.04 -9.01 16 18 C 0.03 0.40 10.95 83.21 0.91 1.31 16 19 C -0.13 -0.95 9.99 22.06 0.22 -0.73 16 20 C -0.08 -0.64 10.07 22.30 0.22 -0.42 16 21 C -0.10 -1.53 10.11 22.41 0.23 -1.31 16 22 C 0.21 4.77 7.81 134.11 1.05 5.82 16 23 N -0.51 -13.95 11.32 -182.41 -2.06 -16.01 16 24 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 25 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 26 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 27 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.15 3.22 8.14 -2.39 -0.02 3.21 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 36 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 37 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -89.86 331.53 2.38 -87.49 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.00 Total: 7.19 kcal Atomic # 6 Polarization: -55.82 SS G_CDS: 5.74 Total: -50.08 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -2.80 Total: -86.15 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -2.70 Total: -38.94 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Atomic # 16 Polarization: 34.38 SS G_CDS: -0.74 Total: 33.64 kcal Total: -89.86 2.38 -87.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176544342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.347 kcal (2) G-P(sol) polarization free energy of solvation -89.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds