Wall clock time and date at job start Tue Mar 31 2020 06:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.59388 * 2 1 4 4 C 1.53748 * 109.53154 * 239.80933 * 2 1 3 5 5 S 1.81930 * 106.75742 * 169.40335 * 4 2 1 6 6 C 1.76631 * 101.85497 * 43.48815 * 5 4 2 7 7 C 1.39088 * 118.30136 * 168.42432 * 6 5 4 8 8 C 1.38043 * 120.47407 * 179.43646 * 7 6 5 9 9 C 1.38281 * 119.63049 * 359.90430 * 8 7 6 10 10 C 1.37817 * 120.21655 * 0.31044 * 9 8 7 11 11 C 1.38935 * 121.44228 * 348.32477 * 6 5 4 12 12 N 1.39121 * 124.91521 * 1.15972 * 11 6 5 13 13 C 1.46902 * 110.99750 * 206.72508 * 12 11 6 14 14 C 1.50698 * 109.47265 * 64.32346 * 13 12 11 15 15 O 1.21299 * 119.99906 * 354.10804 * 14 13 12 16 16 N 1.34773 * 120.00123 * 174.11147 * 14 13 12 17 17 C 1.37100 * 120.00133 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00046 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99853 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99660 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47110 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47785 * 59.99928 * 21 19 17 24 24 H 1.48504 * 109.47497 * 299.99460 * 21 19 17 25 25 H 1.09000 * 109.46992 * 306.79809 * 1 2 3 26 26 H 1.09003 * 109.46761 * 66.78952 * 1 2 3 27 27 H 1.08996 * 109.47288 * 186.79451 * 1 2 3 28 28 H 1.08998 * 109.99074 * 288.71198 * 4 2 1 29 29 H 1.08998 * 109.99163 * 50.08741 * 4 2 1 30 30 H 1.08001 * 119.76270 * 359.44241 * 7 6 5 31 31 H 1.08002 * 120.18815 * 179.85343 * 8 7 6 32 32 H 1.08002 * 119.89197 * 180.33176 * 9 8 7 33 33 H 1.07996 * 119.57524 * 180.02562 * 10 9 8 34 34 H 1.08997 * 109.47132 * 304.31896 * 13 12 11 35 35 H 1.09005 * 109.46500 * 184.32505 * 13 12 11 36 36 H 0.97001 * 119.99550 * 359.97438 * 16 14 13 37 37 H 0.96996 * 120.00243 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0441 -0.7287 -1.2525 5 16 3.8332 -0.4125 -1.3460 6 6 4.3297 -0.6370 0.3341 7 6 5.6897 -0.7143 0.6151 8 6 6.1281 -0.8777 1.9139 9 6 5.2062 -0.9630 2.9410 10 6 3.8569 -0.8916 2.6696 11 6 3.3966 -0.7334 1.3589 12 7 2.0168 -0.6900 1.1861 13 6 1.3502 -0.1910 2.3964 14 6 1.7621 1.2373 2.6440 15 8 2.6147 1.7515 1.9512 16 7 1.1832 1.9433 3.6354 17 6 1.5576 3.2429 3.8604 18 1 2.3166 3.7007 3.2435 19 6 0.9611 3.9706 4.8828 20 7 0.0379 3.4133 5.6338 21 14 1.4717 5.7410 5.1898 22 1 0.6916 6.2910 6.3275 23 1 1.2086 6.5503 3.9728 24 1 2.9203 5.7896 5.5130 25 1 -0.3633 0.6156 0.8229 26 1 -0.3633 0.4050 -0.9445 27 1 -0.3634 -1.0204 0.1216 28 1 1.8589 -1.7991 -1.1631 29 1 1.5492 -0.3367 -2.1410 30 1 6.4080 -0.6458 -0.1885 31 1 7.1852 -0.9396 2.1265 32 1 5.5446 -1.0855 3.9592 33 1 3.1459 -0.9589 3.4797 34 1 1.6382 -0.8054 3.2494 35 1 0.2696 -0.2395 2.2620 36 1 0.5012 1.5322 4.1892 37 1 -0.2275 2.4942 5.4741 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177388003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:55 Heat of formation + Delta-G solvation = 13.393120 kcal Electronic energy + Delta-G solvation = -21752.631999 eV Core-core repulsion = 18621.550674 eV Total energy + Delta-G solvation = -3131.081326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48903 -38.07112 -36.79848 -34.35238 -32.66684 -31.31831 -30.78391 -29.61840 -27.35736 -26.44119 -24.21661 -22.78381 -21.88841 -20.54165 -19.40272 -18.02642 -17.79419 -16.73783 -16.39375 -15.99380 -15.41519 -14.73449 -14.55671 -14.07121 -13.75536 -13.65462 -13.48777 -13.30819 -13.04155 -12.61298 -12.54328 -12.36168 -11.91896 -11.68988 -11.31261 -11.20349 -11.11850 -10.97967 -10.64648 -10.25868 -10.00148 -9.95686 -9.82129 -9.57583 -9.37404 -8.69841 -8.12935 -7.70138 -6.88525 -6.83565 -3.97692 1.56794 1.69495 1.80941 2.54747 3.23506 3.30402 3.50152 3.61142 3.68965 4.15104 4.21769 4.54874 4.76272 4.88944 5.04213 5.16013 5.16973 5.25332 5.40129 5.46241 5.51771 5.57713 5.60751 5.71454 5.77871 5.84220 5.92812 6.02511 6.16579 6.22967 6.32086 6.55735 6.81584 6.92240 7.11723 7.50162 7.68940 7.98921 8.47426 8.68154 9.35929 9.73110 10.58711 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018293 B = 0.005422 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.287174 B = 5163.243184 C = 5792.723579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 H 0.092 0.908 4 C -0.093 4.093 5 S -0.142 6.142 6 C -0.115 4.115 7 C -0.074 4.074 8 C -0.146 4.146 9 C -0.090 4.090 10 C -0.149 4.149 11 C 0.172 3.828 12 N -0.484 5.484 13 C 0.035 3.965 14 C 0.410 3.590 15 O -0.572 6.572 16 N -0.566 5.566 17 C -0.382 4.382 18 H 0.099 0.901 19 C -0.006 4.006 20 N -0.897 5.897 21 Si 1.089 2.911 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.376 0.624 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -10.431 -8.334 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 H 0.110 0.890 4 C -0.242 4.242 5 S 0.099 5.901 6 C -0.230 4.230 7 C -0.097 4.097 8 C -0.167 4.167 9 C -0.110 4.110 10 C -0.172 4.172 11 C 0.067 3.933 12 N -0.197 5.197 13 C -0.094 4.094 14 C 0.195 3.805 15 O -0.457 6.457 16 N -0.204 5.204 17 C -0.511 4.511 18 H 0.117 0.883 19 C -0.209 4.209 20 N -0.535 5.535 21 Si 0.915 3.085 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.209 0.791 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.479 -8.870 -9.006 13.111 hybrid contribution -0.660 -1.255 0.618 1.547 sum 2.819 -10.125 -8.388 13.447 Atomic orbital electron populations 1.21959 0.93048 1.02590 1.02836 1.21788 0.96128 0.97949 0.87113 0.88980 1.23935 0.94336 1.04556 1.01371 1.85251 1.07837 1.89563 1.07405 1.20836 0.95753 1.11568 0.94809 1.20561 0.92697 0.99460 0.97016 1.20798 0.99144 1.04478 0.92296 1.20848 0.92713 0.98572 0.98913 1.21205 0.96388 1.04967 0.94592 1.18137 0.86716 0.95416 0.92994 1.56938 1.05032 1.53526 1.04156 1.22378 1.00172 0.94631 0.92216 1.20493 0.86712 0.88512 0.84766 1.90582 1.34562 1.71071 1.49456 1.41969 1.36094 1.12947 1.29355 1.20535 1.23951 0.88040 1.18597 0.88345 1.26510 0.94866 1.06961 0.92591 1.70912 1.28857 1.14884 1.38881 0.83158 0.76136 0.72512 0.76698 1.20298 1.20979 1.20941 0.91592 0.91362 0.91583 0.88590 0.86842 0.86082 0.86084 0.86221 0.85821 0.88129 0.88072 0.79142 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.31 37.16 0.31 -1.56 16 2 C 0.08 1.24 1.97 -68.02 -0.13 1.10 16 3 H 0.09 1.85 6.32 -51.93 -0.33 1.52 16 4 C -0.09 -1.26 6.06 37.55 0.23 -1.03 16 5 S -0.14 -2.26 22.13 -107.50 -2.38 -4.63 16 6 C -0.11 -2.05 6.05 -39.01 -0.24 -2.29 16 7 C -0.07 -1.20 9.68 -39.34 -0.38 -1.58 16 8 C -0.15 -2.22 10.06 -39.64 -0.40 -2.62 16 9 C -0.09 -1.44 10.02 -39.72 -0.40 -1.84 16 10 C -0.15 -2.65 8.19 -39.15 -0.32 -2.97 16 11 C 0.17 3.15 4.36 -83.71 -0.37 2.79 16 12 N -0.48 -8.15 4.23 -165.31 -0.70 -8.85 16 13 C 0.04 0.60 4.82 -4.98 -0.02 0.58 16 14 C 0.41 9.16 6.60 -10.99 -0.07 9.09 16 15 O -0.57 -14.90 12.74 5.54 0.07 -14.83 16 16 N -0.57 -13.62 5.28 -10.96 -0.06 -13.68 16 17 C -0.38 -10.46 9.68 -14.93 -0.14 -10.60 16 18 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 19 C -0.01 -0.17 5.50 -17.47 -0.10 -0.26 16 20 N -0.90 -24.47 13.68 55.50 0.76 -23.71 16 21 Si 1.09 24.00 29.92 -169.99 -5.09 18.91 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 25 H 0.07 0.94 6.58 -51.93 -0.34 0.60 16 26 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.11 1.25 8.11 -51.93 -0.42 0.83 16 30 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.12 2.08 5.38 -52.49 -0.28 1.80 16 34 H 0.10 1.55 5.74 -51.93 -0.30 1.25 16 35 H 0.10 1.48 5.88 -51.93 -0.31 1.18 16 36 H 0.38 8.32 6.73 -40.82 -0.27 8.04 16 37 H 0.26 6.81 6.77 -40.82 -0.28 6.54 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -32.06 307.86 -9.02 -41.08 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -4.23 Total: 12.27 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -2.03 Total: -11.20 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.00 Total: -46.24 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.07 Total: -14.83 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.09 Total: 18.91 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.38 Total: -4.63 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.06 -9.02 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177388003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.477 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds