Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.59388 * 2 1 4 4 C 1.53748 * 109.53154 * 239.80933 * 2 1 3 5 5 S 1.81930 * 106.75742 * 169.40335 * 4 2 1 6 6 C 1.76631 * 101.85497 * 43.48815 * 5 4 2 7 7 C 1.39088 * 118.30136 * 168.42432 * 6 5 4 8 8 C 1.38043 * 120.47407 * 179.43646 * 7 6 5 9 9 C 1.38281 * 119.63049 * 359.90430 * 8 7 6 10 10 C 1.37817 * 120.21655 * 0.31044 * 9 8 7 11 11 C 1.38935 * 121.44228 * 348.32477 * 6 5 4 12 12 N 1.39121 * 124.91521 * 1.15972 * 11 6 5 13 13 C 1.46902 * 110.99750 * 206.72508 * 12 11 6 14 14 C 1.50698 * 109.47265 * 64.32346 * 13 12 11 15 15 O 1.21299 * 119.99906 * 354.10804 * 14 13 12 16 16 N 1.34773 * 120.00123 * 174.11147 * 14 13 12 17 17 C 1.37100 * 120.00133 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00046 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99853 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99660 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47110 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47785 * 59.99928 * 21 19 17 24 24 H 1.48504 * 109.47497 * 299.99460 * 21 19 17 25 25 H 1.09000 * 109.46992 * 306.79809 * 1 2 3 26 26 H 1.09003 * 109.46761 * 66.78952 * 1 2 3 27 27 H 1.08996 * 109.47288 * 186.79451 * 1 2 3 28 28 H 1.08998 * 109.99074 * 288.71198 * 4 2 1 29 29 H 1.08998 * 109.99163 * 50.08741 * 4 2 1 30 30 H 1.08001 * 119.76270 * 359.44241 * 7 6 5 31 31 H 1.08002 * 120.18815 * 179.85343 * 8 7 6 32 32 H 1.08002 * 119.89197 * 180.33176 * 9 8 7 33 33 H 1.07996 * 119.57524 * 180.02562 * 10 9 8 34 34 H 1.08997 * 109.47132 * 304.31896 * 13 12 11 35 35 H 1.09005 * 109.46500 * 184.32505 * 13 12 11 36 36 H 0.97001 * 119.99550 * 359.97438 * 16 14 13 37 37 H 0.96996 * 120.00243 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0441 -0.7287 -1.2525 5 16 3.8332 -0.4125 -1.3460 6 6 4.3297 -0.6370 0.3341 7 6 5.6897 -0.7143 0.6151 8 6 6.1281 -0.8777 1.9139 9 6 5.2062 -0.9630 2.9410 10 6 3.8569 -0.8916 2.6696 11 6 3.3966 -0.7334 1.3589 12 7 2.0168 -0.6900 1.1861 13 6 1.3502 -0.1910 2.3964 14 6 1.7621 1.2373 2.6440 15 8 2.6147 1.7515 1.9512 16 7 1.1832 1.9433 3.6354 17 6 1.5576 3.2429 3.8604 18 1 2.3166 3.7007 3.2435 19 6 0.9611 3.9706 4.8828 20 7 0.0379 3.4133 5.6338 21 14 1.4717 5.7410 5.1898 22 1 0.6916 6.2910 6.3275 23 1 1.2086 6.5503 3.9728 24 1 2.9203 5.7896 5.5130 25 1 -0.3633 0.6156 0.8229 26 1 -0.3633 0.4050 -0.9445 27 1 -0.3634 -1.0204 0.1216 28 1 1.8589 -1.7991 -1.1631 29 1 1.5492 -0.3367 -2.1410 30 1 6.4080 -0.6458 -0.1885 31 1 7.1852 -0.9396 2.1265 32 1 5.5446 -1.0855 3.9592 33 1 3.1459 -0.9589 3.4797 34 1 1.6382 -0.8054 3.2494 35 1 0.2696 -0.2395 2.2620 36 1 0.5012 1.5322 4.1892 37 1 -0.2275 2.4942 5.4741 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177388003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = -7.341881 kcal Electronic energy + Delta-G solvation = -21753.531137 eV Core-core repulsion = 18621.550674 eV Total energy + Delta-G solvation = -3131.980463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90402 -39.68470 -38.17664 -36.30586 -33.93413 -33.20668 -32.09541 -30.94152 -28.51385 -27.90978 -26.04975 -24.05256 -23.18555 -22.06059 -20.93359 -19.98314 -19.10644 -18.28274 -17.71037 -17.41639 -16.80588 -16.47032 -15.94238 -15.59694 -15.34534 -15.16629 -14.93651 -14.64690 -14.22058 -13.98135 -13.76503 -13.52970 -13.39204 -13.08343 -12.89851 -12.83616 -12.37819 -12.31901 -11.96041 -11.92278 -11.87958 -11.58951 -11.31525 -11.06055 -10.65706 -10.39033 -10.11713 -9.04382 -8.94268 -8.16767 -6.08853 0.28863 0.41053 0.61735 1.34560 1.47394 1.51361 1.78578 1.93645 2.33780 2.38885 2.85617 3.01416 3.13059 3.46931 3.64321 3.89043 3.99464 4.06618 4.15923 4.19062 4.26786 4.35894 4.39928 4.48150 4.56110 4.57846 4.73700 4.83852 4.95782 5.07048 5.13542 5.32866 5.54892 5.56740 5.66099 5.85972 5.93487 6.20369 6.52107 6.70387 7.39154 7.86587 8.52663 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018293 B = 0.005422 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.287174 B = 5163.243184 C = 5792.723579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 H 0.044 0.956 4 C -0.081 4.081 5 S -0.159 6.159 6 C -0.138 4.138 7 C -0.087 4.087 8 C -0.144 4.144 9 C -0.100 4.100 10 C -0.173 4.173 11 C 0.146 3.854 12 N -0.475 5.475 13 C 0.044 3.956 14 C 0.419 3.581 15 O -0.609 6.609 16 N -0.579 5.579 17 C -0.406 4.406 18 H 0.068 0.932 19 C -0.037 4.037 20 N -0.913 5.913 21 Si 1.128 2.872 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.276 1.276 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.385 0.615 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -11.436 -8.741 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.062 0.938 4 C -0.230 4.230 5 S 0.083 5.917 6 C -0.253 4.253 7 C -0.110 4.110 8 C -0.164 4.164 9 C -0.120 4.120 10 C -0.194 4.194 11 C 0.042 3.958 12 N -0.188 5.188 13 C -0.085 4.085 14 C 0.206 3.794 15 O -0.494 6.494 16 N -0.218 5.218 17 C -0.535 4.535 18 H 0.086 0.914 19 C -0.237 4.237 20 N -0.552 5.552 21 Si 0.949 3.051 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.201 1.201 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.130 0.870 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.219 0.781 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.268 -9.910 -9.422 14.059 hybrid contribution -0.509 -1.007 0.660 1.307 sum 2.759 -10.917 -8.762 14.267 Atomic orbital electron populations 1.21945 0.90571 1.03894 1.03375 1.21786 0.98029 0.95594 0.87905 0.93782 1.24030 0.92293 1.05335 1.01299 1.85188 1.10260 1.89744 1.06513 1.21193 0.96602 1.11811 0.95706 1.20943 0.92640 0.99217 0.98204 1.21221 1.00760 1.02781 0.91632 1.21233 0.92359 0.97974 1.00458 1.21450 0.97482 1.05862 0.94649 1.18406 0.87524 0.96384 0.93518 1.57122 1.04577 1.52928 1.04124 1.22427 1.01844 0.90759 0.93467 1.21483 0.84924 0.90181 0.82831 1.90568 1.35911 1.72612 1.50352 1.41985 1.37000 1.12331 1.30438 1.20421 1.24196 0.89854 1.19041 0.91382 1.27670 0.94261 1.09789 0.91932 1.70971 1.29586 1.15204 1.39467 0.82687 0.76305 0.69054 0.77095 1.19517 1.20035 1.20128 0.93343 0.89239 0.89149 0.87001 0.84060 0.84410 0.82827 0.83928 0.85637 0.86215 0.85219 0.78116 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.31 71.98 0.60 -2.66 16 2 C 0.07 2.30 1.97 45.41 0.09 2.39 16 3 H 0.04 1.80 6.32 -2.38 -0.02 1.79 16 4 C -0.08 -2.04 6.06 72.23 0.44 -1.60 16 5 S -0.16 -4.93 22.13 -56.49 -1.25 -6.18 16 6 C -0.14 -4.91 6.05 22.64 0.14 -4.77 16 7 C -0.09 -2.75 9.68 22.43 0.22 -2.53 16 8 C -0.14 -4.14 10.06 22.23 0.22 -3.91 16 9 C -0.10 -3.09 10.02 22.18 0.22 -2.87 16 10 C -0.17 -6.05 8.19 22.55 0.18 -5.87 16 11 C 0.15 5.30 4.36 38.53 0.17 5.47 16 12 N -0.48 -15.53 4.23 -676.93 -2.87 -18.39 16 13 C 0.04 1.46 4.82 85.56 0.41 1.87 16 14 C 0.42 18.93 6.60 87.66 0.58 19.51 16 15 O -0.61 -32.58 12.74 -3.09 -0.04 -32.62 16 16 N -0.58 -28.26 5.28 -306.99 -1.62 -29.89 16 17 C -0.41 -22.74 9.68 84.04 0.81 -21.92 16 18 H 0.07 4.17 7.16 -2.91 -0.02 4.15 16 19 C -0.04 -2.00 5.50 84.93 0.47 -1.54 16 20 N -0.91 -49.82 13.68 21.66 0.30 -49.52 16 21 Si 1.13 48.34 29.92 68.60 2.05 50.40 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 25 H 0.05 1.31 6.58 -2.39 -0.02 1.29 16 26 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.14 2.71 8.11 -2.39 -0.02 2.70 16 30 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 31 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.13 4.17 5.38 -2.91 -0.02 4.15 16 34 H 0.12 3.53 5.74 -2.39 -0.01 3.52 16 35 H 0.13 3.56 5.88 -2.38 -0.01 3.54 16 36 H 0.38 17.16 6.73 -92.71 -0.62 16.54 16 37 H 0.26 13.64 6.77 -92.71 -0.63 13.02 16 Total: -1.00 -71.01 307.86 1.75 -69.26 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.63 Total: 35.39 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.55 Total: -18.45 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -4.19 Total: -97.80 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.04 Total: -32.62 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.05 Total: 50.40 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -1.25 Total: -6.18 kcal Total: -71.01 1.75 -69.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177388003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.919 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds