Wall clock time and date at job start Tue Mar 31 2020 06:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75498 * 124.71311 * 2 1 4 4 C 1.70452 * 92.44580 * 179.80414 * 3 2 1 5 5 C 1.36006 * 110.81369 * 0.34992 * 4 3 2 6 6 C 1.47196 * 123.45953 * 179.85612 * 5 4 3 7 7 O 1.21640 * 119.99641 * 232.81913 * 6 5 4 8 8 N 1.34771 * 119.99833 * 52.82252 * 6 5 4 9 9 C 1.46495 * 120.00454 * 5.24253 * 8 6 5 10 10 C 1.50697 * 109.47410 * 270.00593 * 9 8 6 11 11 H 1.07998 * 119.99805 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99816 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00211 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99767 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47324 * 60.00151 * 14 12 10 16 16 H 1.48500 * 109.47234 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47116 * 299.99947 * 14 12 10 18 18 C 1.46499 * 119.99654 * 185.24934 * 8 6 5 19 19 C 1.53001 * 109.47098 * 265.33912 * 18 8 6 20 20 C 1.47209 * 109.46913 * 180.02562 * 19 18 8 21 21 N 9.11666 * 139.38012 * 164.10818 * 2 1 3 22 22 C 1.32774 * 124.71157 * 180.02562 * 2 1 3 23 23 C 1.50701 * 123.45650 * 359.97438 * 22 2 1 24 24 H 1.09002 * 109.46877 * 269.99564 * 1 2 3 25 25 H 1.09004 * 109.46912 * 29.99493 * 1 2 3 26 26 H 1.08996 * 109.47080 * 149.99705 * 1 2 3 27 27 H 1.07998 * 124.59504 * 180.22391 * 4 3 2 28 28 H 1.09006 * 109.46697 * 30.00527 * 9 8 6 29 29 H 1.09001 * 109.47644 * 150.00233 * 9 8 6 30 30 H 0.96999 * 120.00009 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47584 * 25.34251 * 18 8 6 32 32 H 1.09003 * 109.47058 * 145.34027 * 18 8 6 33 33 H 1.08993 * 109.46818 * 299.99931 * 19 18 8 34 34 H 1.08990 * 109.47086 * 60.00510 * 19 18 8 35 35 H 1.09005 * 109.46958 * 270.02734 * 23 22 2 36 36 H 1.09002 * 109.47420 * 30.02424 * 23 22 2 37 37 H 1.09003 * 109.47255 * 150.02401 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5064 1.4426 0.0000 4 6 3.9477 0.5326 0.0058 5 6 3.6777 -0.8003 -0.0001 6 6 4.7201 -1.8396 -0.0002 7 8 4.7043 -2.7167 -0.8429 8 7 5.6919 -1.8193 0.9334 9 6 5.6475 -0.8330 2.0157 10 6 6.3790 0.4137 1.5896 11 1 6.8321 0.4660 0.6107 12 6 6.4699 1.4876 2.4496 13 7 5.9177 1.4240 3.6416 14 14 7.3760 3.0332 1.9212 15 1 6.7278 3.5974 0.7101 16 1 7.3311 4.0329 3.0184 17 1 8.7899 2.6980 1.6153 18 6 6.7928 -2.7835 0.8657 19 6 6.4671 -3.9920 1.7456 20 6 7.5736 -4.9606 1.6781 21 7 8.4270 -5.7084 1.6252 22 6 2.2631 -1.0914 -0.0005 23 6 1.7027 -2.4904 -0.0006 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 4.9408 0.9570 0.0113 28 1 4.6097 -0.5866 2.2402 29 1 6.1230 -1.2474 2.9047 30 1 5.9819 2.1794 4.2467 31 1 6.9267 -3.1104 -0.1655 32 1 7.7101 -2.3130 1.2197 33 1 6.3333 -3.6651 2.7767 34 1 5.5499 -4.4625 1.3917 35 1 1.5675 -2.8276 1.0271 36 1 0.7414 -2.4967 -0.5144 37 1 2.3937 -3.1586 -0.5144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179821993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:52 Heat of formation + Delta-G solvation = 8.835835 kcal Electronic energy + Delta-G solvation = -21087.969272 eV Core-core repulsion = 17956.690327 eV Total energy + Delta-G solvation = -3131.278945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.57765 -37.24262 -36.49489 -35.21428 -33.06291 -32.10525 -30.76184 -29.12893 -27.34790 -25.51918 -24.43116 -23.26265 -22.19826 -18.96206 -17.89082 -17.36750 -16.82235 -16.51193 -16.18897 -15.42471 -14.70264 -14.53991 -14.26844 -14.01609 -13.82536 -13.33924 -13.03618 -12.63708 -12.55927 -12.50163 -12.30114 -12.14523 -12.00748 -11.78045 -11.62973 -11.53499 -11.30046 -11.19231 -11.05568 -10.82585 -10.65574 -10.40602 -10.23247 -9.89942 -9.22280 -8.68294 -8.06980 -7.94158 -7.74230 -6.30840 -4.37264 1.53328 2.09370 2.45700 2.69264 2.86064 2.95395 3.14009 3.21123 3.23255 3.55925 3.82053 4.20871 4.40036 5.01838 5.10616 5.24570 5.34707 5.39737 5.43130 5.63672 5.66554 5.68463 5.77944 5.91699 6.00170 6.08801 6.17072 6.24413 6.36152 6.46425 6.60878 6.83609 6.93921 7.11134 7.41363 7.61073 7.71354 7.92876 8.15728 8.64681 8.87015 9.27647 10.75326 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.007879 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.178406 B = 3553.117418 C = 5870.391209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.226 4.226 3 S 0.143 5.857 4 C -0.159 4.159 5 C -0.157 4.157 6 C 0.586 3.414 7 O -0.564 6.564 8 N -0.591 5.591 9 C 0.237 3.763 10 C -0.543 4.543 11 H 0.062 0.938 12 C 0.071 3.929 13 N -0.880 5.880 14 Si 0.887 3.113 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.126 3.874 19 C -0.045 4.045 20 C 0.222 3.778 21 N -0.451 5.451 22 C -0.061 4.061 23 C -0.096 4.096 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.194 0.806 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.268 0.732 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 -1.394 -3.566 9.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.342 4.342 3 S 0.410 5.590 4 C -0.296 4.296 5 C -0.173 4.173 6 C 0.374 3.626 7 O -0.445 6.445 8 N -0.321 5.321 9 C 0.117 3.883 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.134 4.134 13 N -0.517 5.517 14 Si 0.714 3.286 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.200 1.200 18 C 0.001 3.999 19 C -0.087 4.087 20 C -0.096 4.096 21 N -0.129 5.129 22 C -0.073 4.073 23 C -0.155 4.155 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.211 0.789 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.075 -1.269 -3.869 9.044 hybrid contribution 0.753 -0.070 0.126 0.766 sum -7.322 -1.340 -3.743 8.332 Atomic orbital electron populations 1.20224 0.88380 1.02365 1.02166 1.23907 0.99623 0.95992 1.14668 1.82816 0.95172 1.09234 1.71748 1.26257 1.04902 0.96815 1.01631 1.19755 0.92840 0.93076 1.11626 1.17685 0.80914 0.83526 0.80515 1.90692 1.76391 1.38154 1.39303 1.48131 1.22492 1.33172 1.28266 1.19500 0.98829 0.85758 0.84211 1.21402 1.35956 0.99169 1.01579 0.91940 1.24902 0.95139 0.98597 0.94738 1.69891 1.42882 1.31876 1.07019 0.86719 0.80663 0.82691 0.78518 1.19906 1.20920 1.19958 1.21125 0.90939 0.87750 1.00095 1.19780 0.92210 0.92259 1.04419 1.29128 0.94157 0.93705 0.92632 1.81173 1.11182 1.11098 1.09413 1.19568 0.90690 0.95843 1.01229 1.20525 1.00712 0.92295 1.01976 0.91325 0.91919 0.91029 0.78948 0.93834 0.94372 0.92250 0.89860 0.89390 0.86966 0.87298 0.91560 0.91826 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.04 36.01 0.36 -0.46 16 2 C -0.23 -3.41 6.44 -36.18 -0.23 -3.65 16 3 S 0.14 2.30 23.00 -107.50 -2.47 -0.17 16 4 C -0.16 -3.02 8.89 29.93 0.27 -2.76 16 5 C -0.16 -2.99 4.60 -104.63 -0.48 -3.47 16 6 C 0.59 11.52 6.97 -12.62 -0.09 11.44 16 7 O -0.56 -11.80 15.40 5.24 0.08 -11.72 16 8 N -0.59 -11.05 2.46 -176.41 -0.43 -11.48 16 9 C 0.24 5.02 4.74 -5.20 -0.02 5.00 16 10 C -0.54 -12.55 6.44 -34.44 -0.22 -12.77 16 11 H 0.06 1.46 7.47 -52.49 -0.39 1.07 16 12 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.88 -22.41 13.29 55.43 0.74 -21.68 16 14 Si 0.89 19.04 29.54 -169.99 -5.02 14.02 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 C 0.13 2.00 5.38 -4.04 -0.02 1.98 16 19 C -0.05 -0.59 6.03 -29.51 -0.18 -0.77 16 20 C 0.22 3.19 15.43 -20.76 -0.32 2.87 16 21 N -0.45 -7.53 18.54 42.15 0.78 -6.75 16 22 C -0.06 -1.02 6.01 -104.06 -0.63 -1.65 16 23 C -0.10 -1.35 9.68 36.01 0.35 -1.01 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.71 6.66 -51.93 -0.35 0.36 16 27 H 0.19 3.97 5.36 -52.49 -0.28 3.69 16 28 H 0.04 1.01 6.68 -51.93 -0.35 0.66 16 29 H 0.04 0.83 8.07 -51.93 -0.42 0.42 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.08 1.34 7.36 -51.93 -0.38 0.96 16 32 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 33 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.74 6.64 -51.93 -0.34 0.40 16 37 H 0.08 1.22 6.68 -51.93 -0.35 0.88 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -27.46 331.70 -7.17 -34.63 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.53 Total: 1.76 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.31 Total: -3.61 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 1.08 Total: -39.91 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.47 Total: -0.17 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.46 -7.17 -34.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179821993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.466 kcal (2) G-P(sol) polarization free energy of solvation -27.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds