Wall clock time and date at job start Tue Mar 31 2020 06:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75498 * 124.71311 * 2 1 4 4 C 1.70452 * 92.44580 * 179.80414 * 3 2 1 5 5 C 1.36006 * 110.81369 * 0.34992 * 4 3 2 6 6 C 1.47196 * 123.45953 * 179.85612 * 5 4 3 7 7 O 1.21640 * 119.99641 * 232.81913 * 6 5 4 8 8 N 1.34771 * 119.99833 * 52.82252 * 6 5 4 9 9 C 1.46495 * 120.00454 * 5.24253 * 8 6 5 10 10 C 1.50697 * 109.47410 * 270.00593 * 9 8 6 11 11 H 1.07998 * 119.99805 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99816 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00211 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99767 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47324 * 60.00151 * 14 12 10 16 16 H 1.48500 * 109.47234 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47116 * 299.99947 * 14 12 10 18 18 C 1.46499 * 119.99654 * 185.24934 * 8 6 5 19 19 C 1.53001 * 109.47098 * 265.33912 * 18 8 6 20 20 C 1.47209 * 109.46913 * 180.02562 * 19 18 8 21 21 N 9.11666 * 139.38012 * 164.10818 * 2 1 3 22 22 C 1.32774 * 124.71157 * 180.02562 * 2 1 3 23 23 C 1.50701 * 123.45650 * 359.97438 * 22 2 1 24 24 H 1.09002 * 109.46877 * 269.99564 * 1 2 3 25 25 H 1.09004 * 109.46912 * 29.99493 * 1 2 3 26 26 H 1.08996 * 109.47080 * 149.99705 * 1 2 3 27 27 H 1.07998 * 124.59504 * 180.22391 * 4 3 2 28 28 H 1.09006 * 109.46697 * 30.00527 * 9 8 6 29 29 H 1.09001 * 109.47644 * 150.00233 * 9 8 6 30 30 H 0.96999 * 120.00009 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47584 * 25.34251 * 18 8 6 32 32 H 1.09003 * 109.47058 * 145.34027 * 18 8 6 33 33 H 1.08993 * 109.46818 * 299.99931 * 19 18 8 34 34 H 1.08990 * 109.47086 * 60.00510 * 19 18 8 35 35 H 1.09005 * 109.46958 * 270.02734 * 23 22 2 36 36 H 1.09002 * 109.47420 * 30.02424 * 23 22 2 37 37 H 1.09003 * 109.47255 * 150.02401 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5064 1.4426 0.0000 4 6 3.9477 0.5326 0.0058 5 6 3.6777 -0.8003 -0.0001 6 6 4.7201 -1.8396 -0.0002 7 8 4.7043 -2.7167 -0.8429 8 7 5.6919 -1.8193 0.9334 9 6 5.6475 -0.8330 2.0157 10 6 6.3790 0.4137 1.5896 11 1 6.8321 0.4660 0.6107 12 6 6.4699 1.4876 2.4496 13 7 5.9177 1.4240 3.6416 14 14 7.3760 3.0332 1.9212 15 1 6.7278 3.5974 0.7101 16 1 7.3311 4.0329 3.0184 17 1 8.7899 2.6980 1.6153 18 6 6.7928 -2.7835 0.8657 19 6 6.4671 -3.9920 1.7456 20 6 7.5736 -4.9606 1.6781 21 7 8.4270 -5.7084 1.6252 22 6 2.2631 -1.0914 -0.0005 23 6 1.7027 -2.4904 -0.0006 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 4.9408 0.9570 0.0113 28 1 4.6097 -0.5866 2.2402 29 1 6.1230 -1.2474 2.9047 30 1 5.9819 2.1794 4.2467 31 1 6.9267 -3.1104 -0.1655 32 1 7.7101 -2.3130 1.2197 33 1 6.3333 -3.6651 2.7767 34 1 5.5499 -4.4625 1.3917 35 1 1.5675 -2.8276 1.0271 36 1 0.7414 -2.4967 -0.5144 37 1 2.3937 -3.1586 -0.5144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179821993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:52 Heat of formation + Delta-G solvation = -4.503401 kcal Electronic energy + Delta-G solvation = -21088.547704 eV Core-core repulsion = 17956.690327 eV Total energy + Delta-G solvation = -3131.857377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06522 -38.51950 -37.79363 -36.77954 -34.74303 -33.45209 -32.06766 -30.21516 -29.09266 -26.73583 -25.73050 -24.98387 -23.57949 -20.32214 -19.28547 -18.69264 -18.31089 -18.07189 -17.65112 -16.94150 -16.25783 -15.89904 -15.64016 -15.25561 -14.99479 -14.63051 -14.42175 -14.25618 -13.82293 -13.64287 -13.51792 -13.49366 -13.31878 -13.20907 -13.07361 -12.76915 -12.70059 -12.64975 -12.47886 -12.34908 -12.06767 -11.82989 -11.66773 -11.60921 -10.77162 -10.53768 -9.53849 -9.32770 -9.05951 -8.16649 -6.26677 0.17632 0.82647 1.11877 1.34420 1.41860 1.46115 1.50163 1.62808 1.77173 2.12248 2.31744 2.48289 3.14798 3.16503 3.83730 4.02751 4.12481 4.19357 4.33023 4.52704 4.55852 4.71082 4.75383 4.82668 4.86065 4.93468 4.95132 5.01600 5.12703 5.18105 5.23413 5.31203 5.52157 5.68601 5.74823 5.85820 6.10963 6.52606 6.53644 6.83482 7.29481 7.42925 8.88634 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.007879 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.178406 B = 3553.117418 C = 5870.391209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.211 4.211 3 S 0.165 5.835 4 C -0.190 4.190 5 C -0.171 4.171 6 C 0.584 3.416 7 O -0.580 6.580 8 N -0.589 5.589 9 C 0.254 3.746 10 C -0.538 4.538 11 H 0.055 0.945 12 C 0.035 3.965 13 N -0.909 5.909 14 Si 0.933 3.067 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.123 3.877 19 C -0.030 4.030 20 C 0.246 3.754 21 N -0.488 5.488 22 C -0.086 4.086 23 C -0.090 4.090 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.171 0.829 28 H 0.026 0.974 29 H 0.034 0.966 30 H 0.267 0.733 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.667 -1.351 -3.760 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.328 4.328 3 S 0.433 5.567 4 C -0.327 4.327 5 C -0.188 4.188 6 C 0.372 3.628 7 O -0.463 6.463 8 N -0.318 5.318 9 C 0.134 3.866 10 C -0.576 4.576 11 H 0.073 0.927 12 C -0.167 4.167 13 N -0.547 5.547 14 Si 0.760 3.240 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.002 4.002 19 C -0.071 4.071 20 C -0.072 4.072 21 N -0.166 5.166 22 C -0.098 4.098 23 C -0.149 4.149 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.188 0.812 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.710 -1.231 -4.074 10.601 hybrid contribution 1.215 -0.063 0.130 1.224 sum -8.495 -1.294 -3.943 9.454 Atomic orbital electron populations 1.20412 0.85191 1.04136 1.03543 1.24441 1.01542 0.94763 1.12043 1.82624 0.93766 1.09330 1.71002 1.26075 1.05437 0.97557 1.03654 1.20014 0.94126 0.92849 1.11838 1.17877 0.81138 0.83542 0.80272 1.90672 1.76878 1.38891 1.39812 1.48051 1.23029 1.33190 1.27551 1.19125 0.97287 0.85662 0.84540 1.21536 1.35205 0.99876 1.00994 0.92670 1.25412 0.95838 1.00671 0.94781 1.69969 1.44416 1.32496 1.07855 0.85980 0.79619 0.80261 0.78184 1.19451 1.20997 1.20030 1.21228 0.90107 0.88230 1.00621 1.19684 0.92006 0.90716 1.04705 1.29184 0.93544 0.93020 0.91406 1.81202 1.12292 1.12385 1.10739 1.19837 0.89697 0.97638 1.02583 1.20525 1.01359 0.90272 1.02702 0.89981 0.90324 0.89092 0.81164 0.95610 0.94803 0.92410 0.90204 0.89402 0.85345 0.86021 0.90633 0.89062 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.04 71.24 0.72 -0.67 16 2 C -0.21 -5.92 6.44 24.51 0.16 -5.76 16 3 S 0.17 5.14 23.00 -56.49 -1.30 3.84 16 4 C -0.19 -7.29 8.89 67.30 0.60 -6.69 16 5 C -0.17 -6.51 4.60 -19.87 -0.09 -6.60 16 6 C 0.58 22.99 6.97 86.60 0.60 23.59 16 7 O -0.58 -24.20 15.40 -4.16 -0.06 -24.26 16 8 N -0.59 -22.02 2.46 -830.30 -2.04 -24.05 16 9 C 0.25 10.87 4.74 85.63 0.41 11.28 16 10 C -0.54 -25.10 6.44 25.60 0.16 -24.93 16 11 H 0.06 2.62 7.47 -2.91 -0.02 2.60 16 12 C 0.03 1.68 5.46 84.66 0.46 2.14 16 13 N -0.91 -46.52 13.29 21.45 0.28 -46.24 16 14 Si 0.93 39.06 29.54 68.60 2.03 41.09 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 18 C 0.12 3.82 5.38 86.38 0.46 4.28 16 19 C -0.03 -0.74 6.03 28.79 0.17 -0.57 16 20 C 0.25 6.80 15.43 89.44 1.38 8.18 16 21 N -0.49 -15.95 18.54 20.01 0.37 -15.58 16 22 C -0.09 -2.76 6.01 -19.47 -0.12 -2.88 16 23 C -0.09 -2.34 9.68 71.24 0.69 -1.65 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.09 1.40 6.66 -2.39 -0.02 1.38 16 27 H 0.17 7.24 5.36 -2.91 -0.02 7.22 16 28 H 0.03 1.21 6.68 -2.38 -0.02 1.19 16 29 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 30 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 31 H 0.08 2.56 7.36 -2.39 -0.02 2.54 16 32 H 0.09 2.73 8.11 -2.39 -0.02 2.71 16 33 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.12 2.78 8.14 -2.39 -0.02 2.77 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.09 1.82 6.64 -2.39 -0.02 1.80 16 37 H 0.06 1.80 6.68 -2.39 -0.02 1.78 16 Total: -1.00 -58.63 331.70 5.98 -52.65 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.10 Total: 12.84 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.61 Total: -0.28 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -1.38 Total: -85.87 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.26 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -1.30 Total: 3.84 kcal Total: -58.63 5.98 -52.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179821993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.148 kcal (2) G-P(sol) polarization free energy of solvation -58.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds