Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33632 * 126.03609 * 2 1 4 4 N 1.31788 * 114.49782 * 180.02562 * 3 2 1 5 5 C 1.29024 * 117.12462 * 359.97438 * 4 3 2 6 6 C 1.50703 * 124.91298 * 180.02562 * 5 4 3 7 7 N 1.46892 * 109.47353 * 84.50838 * 6 5 4 8 8 C 1.46906 * 111.00372 * 75.80360 * 7 6 5 9 9 C 1.50690 * 109.47690 * 190.00041 * 8 7 6 10 10 H 1.08003 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00467 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99846 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00361 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47188 * 89.99841 * 13 11 9 15 15 H 1.48494 * 109.47144 * 210.00076 * 13 11 9 16 16 H 1.48503 * 109.46933 * 329.99980 * 13 11 9 17 17 C 1.46896 * 111.00305 * 199.75616 * 7 6 5 18 18 C 1.50706 * 109.46639 * 75.66259 * 17 7 6 19 19 C 1.34505 * 125.79222 * 84.71963 * 18 17 7 20 20 C 1.41385 * 106.84004 * 179.89088 * 19 18 17 21 21 C 1.34514 * 106.84490 * 0.36714 * 20 19 18 22 22 O 1.34303 * 108.41760 * 359.77576 * 21 20 19 23 23 S 1.70980 * 110.16694 * 359.72372 * 5 4 3 24 24 H 1.08998 * 109.47152 * 90.03257 * 1 2 3 25 25 H 1.08996 * 109.47133 * 330.02630 * 1 2 3 26 26 H 1.08997 * 109.47276 * 210.02530 * 1 2 3 27 27 H 1.08001 * 122.75535 * 359.97438 * 3 2 1 28 28 H 1.09010 * 109.46831 * 204.50974 * 6 5 4 29 29 H 1.08993 * 109.47179 * 324.50163 * 6 5 4 30 30 H 1.08999 * 109.46662 * 310.00677 * 8 7 6 31 31 H 1.09004 * 109.47036 * 69.99945 * 8 7 6 32 32 H 0.96998 * 119.99866 * 179.97438 * 12 11 9 33 33 H 1.08996 * 109.47729 * 195.65456 * 17 7 6 34 34 H 1.09002 * 109.47538 * 315.66572 * 17 7 6 35 35 H 1.07997 * 126.58059 * 0.02562 * 19 18 17 36 36 H 1.08003 * 126.57938 * 180.17005 * 20 19 18 37 37 H 1.07992 * 125.79484 * 179.79454 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8170 -0.0005 5 6 3.9311 -0.4258 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 7 5.8592 -0.9615 1.3781 8 6 5.3069 -2.1085 2.1111 9 6 5.6458 -1.9804 3.5738 10 1 6.2151 -1.1319 3.9239 11 6 5.2303 -2.9468 4.4651 12 7 4.5384 -3.9808 4.0386 13 14 5.6499 -2.7876 6.2784 14 1 4.5720 -2.0376 6.9719 15 1 5.7763 -4.1403 6.8778 16 1 6.9349 -2.0582 6.4269 17 6 7.3279 -0.9809 1.3995 18 6 7.8530 0.3964 1.0854 19 6 8.0208 1.3951 1.9707 20 6 8.5338 2.4985 1.2509 21 6 8.6412 2.1108 -0.0327 22 8 8.2274 0.8366 -0.1271 23 16 2.5435 -1.4248 0.0081 24 1 -0.3633 -0.0006 -1.0276 25 1 -0.3633 0.8902 0.5134 26 1 -0.3634 -0.8897 0.5142 27 1 1.9025 2.0875 -0.0004 28 1 5.3865 -1.9273 -0.4268 29 1 5.9729 -0.2554 -0.5972 30 1 4.2239 -2.1300 1.9896 31 1 5.7349 -3.0309 1.7184 32 1 4.2464 -4.6608 4.6655 33 1 7.6729 -1.2845 2.3878 34 1 7.6929 -1.6876 0.6541 35 1 7.8069 1.3600 3.0287 36 1 8.7876 3.4680 1.6537 37 1 8.9996 2.7205 -0.8488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180528858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = 65.176210 kcal Electronic energy + Delta-G solvation = -20802.816834 eV Core-core repulsion = 17673.980991 eV Total energy + Delta-G solvation = -3128.835843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.08672 -39.28056 -36.88310 -32.84532 -32.63306 -32.31186 -30.31031 -28.76547 -26.73978 -25.39983 -24.04971 -22.99506 -21.29929 -21.09747 -19.86515 -18.66115 -17.66563 -16.96156 -16.47370 -15.71723 -15.02924 -14.98895 -14.64142 -14.27104 -13.92120 -13.80814 -13.29786 -12.93306 -12.66628 -12.59358 -12.40871 -12.26563 -12.07197 -11.97628 -11.58351 -11.19762 -11.18095 -10.84303 -10.70892 -10.64158 -10.01905 -9.46765 -9.36353 -9.12006 -8.74985 -8.49942 -8.37283 -8.00315 -7.47235 -6.09458 -4.11229 1.09342 1.75626 2.16917 2.19102 3.07343 3.26039 3.29252 3.35662 3.38783 3.43602 4.38056 4.56084 4.97740 5.14424 5.17464 5.26843 5.31082 5.42044 5.46763 5.49178 5.54868 5.69509 5.84706 5.92860 5.95992 6.08314 6.21295 6.27604 6.43680 6.54878 6.58048 6.95802 7.05111 7.15228 7.59840 7.69524 7.89588 8.02795 8.21592 8.38116 8.95142 9.53188 11.01121 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.008459 B = 0.007846 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.407444 B = 3568.067356 C = 6142.870634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.244 4.244 3 C 0.032 3.968 4 N -0.464 5.464 5 C 0.078 3.922 6 C 0.125 3.875 7 N -0.523 5.523 8 C 0.187 3.813 9 C -0.511 4.511 10 H 0.065 0.935 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.272 1.272 17 C 0.141 3.859 18 C 0.010 3.990 19 C -0.196 4.196 20 C -0.213 4.213 21 C -0.058 4.058 22 O -0.183 6.183 23 S 0.133 5.867 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.167 0.833 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.040 0.960 31 H -0.003 1.003 32 H 0.262 0.738 33 H 0.122 0.878 34 H 0.042 0.958 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 7.546 -9.705 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.366 4.366 3 C -0.120 4.120 4 N -0.178 5.178 5 C -0.200 4.200 6 C -0.006 4.006 7 N -0.249 5.249 8 C 0.063 3.937 9 C -0.550 4.550 10 H 0.083 0.917 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.197 1.197 17 C 0.014 3.986 18 C -0.041 4.041 19 C -0.215 4.215 20 C -0.232 4.232 21 C -0.125 4.125 22 O -0.079 6.079 23 S 0.388 5.612 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.184 0.816 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.060 0.940 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.733 6.918 -9.657 11.902 hybrid contribution 0.006 0.541 0.899 1.049 sum -0.727 7.459 -8.758 11.527 Atomic orbital electron populations 1.20143 0.87339 1.03149 1.02250 1.25953 1.01368 0.95822 1.13414 1.21605 0.87273 0.99606 1.03472 1.66202 1.17104 1.18882 1.15588 1.26835 1.00327 0.90992 1.01890 1.20609 0.87961 0.99035 0.93017 1.61921 1.05025 1.47636 1.10280 1.19945 0.95896 0.84593 0.93301 1.21094 1.35012 1.07360 0.91533 0.91662 1.24954 0.95114 0.95150 0.99044 1.69948 1.37368 1.11048 1.34974 0.86516 0.78933 0.77247 0.84870 1.20648 1.21253 1.19724 1.20526 0.88335 0.86663 1.03115 1.22726 1.01477 0.98229 0.81629 1.21525 1.06097 0.92739 1.01184 1.21773 1.06879 1.00552 0.93980 1.23790 1.05876 0.83987 0.98890 1.83987 1.64189 1.26706 1.33052 1.84144 0.98804 1.10994 1.67209 0.91121 0.90685 0.91262 0.81612 0.93091 0.89013 0.94181 0.98520 0.92807 0.86018 0.94014 0.83638 0.84166 0.78929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.01 0.38 -0.40 16 2 C -0.24 -3.74 6.60 -35.92 -0.24 -3.97 16 3 C 0.03 0.53 11.25 -19.18 -0.22 0.32 16 4 N -0.46 -9.01 10.54 -11.86 -0.13 -9.14 16 5 C 0.08 1.50 6.38 -13.46 -0.09 1.41 16 6 C 0.13 2.38 5.39 -4.98 -0.03 2.35 16 7 N -0.52 -11.19 4.33 -238.97 -1.04 -12.23 16 8 C 0.19 4.64 4.55 -4.98 -0.02 4.62 16 9 C -0.51 -13.80 8.23 -34.45 -0.28 -14.08 16 10 H 0.07 1.75 7.31 -52.48 -0.38 1.37 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 13 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 17 C 0.14 2.71 5.33 -4.97 -0.03 2.68 16 18 C 0.01 0.18 6.16 -35.62 -0.22 -0.04 16 19 C -0.20 -3.45 10.81 -39.70 -0.43 -3.88 16 20 C -0.21 -3.19 10.91 -39.70 -0.43 -3.63 16 21 C -0.06 -0.82 12.09 29.42 0.36 -0.46 16 22 O -0.18 -3.10 10.17 5.67 0.06 -3.04 16 23 S 0.13 2.31 22.04 -107.50 -2.37 -0.06 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 28 H 0.05 0.90 8.00 -51.92 -0.42 0.49 16 29 H 0.09 1.69 6.90 -51.93 -0.36 1.33 16 30 H 0.04 1.06 6.40 -51.93 -0.33 0.73 16 31 H 0.00 -0.08 8.12 -51.93 -0.42 -0.50 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.12 2.45 6.58 -51.93 -0.34 2.11 16 34 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 35 H 0.15 2.56 8.06 -52.49 -0.42 2.14 16 36 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -31.08 331.07 -8.88 -39.96 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.76 Total: 1.76 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.35 Total: -13.55 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.42 Total: -46.24 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: 0.06 Total: -3.04 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.37 Total: -0.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.08 -8.88 -39.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180528858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.132 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds