Wall clock time and date at job start Tue Mar 31 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33632 * 126.03609 * 2 1 4 4 N 1.31788 * 114.49782 * 180.02562 * 3 2 1 5 5 C 1.29024 * 117.12462 * 359.97438 * 4 3 2 6 6 C 1.50703 * 124.91298 * 180.02562 * 5 4 3 7 7 N 1.46892 * 109.47353 * 84.50838 * 6 5 4 8 8 C 1.46906 * 111.00372 * 75.80360 * 7 6 5 9 9 C 1.50690 * 109.47690 * 190.00041 * 8 7 6 10 10 H 1.08003 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00467 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99846 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00361 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47188 * 89.99841 * 13 11 9 15 15 H 1.48494 * 109.47144 * 210.00076 * 13 11 9 16 16 H 1.48503 * 109.46933 * 329.99980 * 13 11 9 17 17 C 1.46896 * 111.00305 * 199.75616 * 7 6 5 18 18 C 1.50706 * 109.46639 * 75.66259 * 17 7 6 19 19 C 1.34505 * 125.79222 * 84.71963 * 18 17 7 20 20 C 1.41385 * 106.84004 * 179.89088 * 19 18 17 21 21 C 1.34514 * 106.84490 * 0.36714 * 20 19 18 22 22 O 1.34303 * 108.41760 * 359.77576 * 21 20 19 23 23 S 1.70980 * 110.16694 * 359.72372 * 5 4 3 24 24 H 1.08998 * 109.47152 * 90.03257 * 1 2 3 25 25 H 1.08996 * 109.47133 * 330.02630 * 1 2 3 26 26 H 1.08997 * 109.47276 * 210.02530 * 1 2 3 27 27 H 1.08001 * 122.75535 * 359.97438 * 3 2 1 28 28 H 1.09010 * 109.46831 * 204.50974 * 6 5 4 29 29 H 1.08993 * 109.47179 * 324.50163 * 6 5 4 30 30 H 1.08999 * 109.46662 * 310.00677 * 8 7 6 31 31 H 1.09004 * 109.47036 * 69.99945 * 8 7 6 32 32 H 0.96998 * 119.99866 * 179.97438 * 12 11 9 33 33 H 1.08996 * 109.47729 * 195.65456 * 17 7 6 34 34 H 1.09002 * 109.47538 * 315.66572 * 17 7 6 35 35 H 1.07997 * 126.58059 * 0.02562 * 19 18 17 36 36 H 1.08003 * 126.57938 * 180.17005 * 20 19 18 37 37 H 1.07992 * 125.79484 * 179.79454 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8170 -0.0005 5 6 3.9311 -0.4258 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 7 5.8592 -0.9615 1.3781 8 6 5.3069 -2.1085 2.1111 9 6 5.6458 -1.9804 3.5738 10 1 6.2151 -1.1319 3.9239 11 6 5.2303 -2.9468 4.4651 12 7 4.5384 -3.9808 4.0386 13 14 5.6499 -2.7876 6.2784 14 1 4.5720 -2.0376 6.9719 15 1 5.7763 -4.1403 6.8778 16 1 6.9349 -2.0582 6.4269 17 6 7.3279 -0.9809 1.3995 18 6 7.8530 0.3964 1.0854 19 6 8.0208 1.3951 1.9707 20 6 8.5338 2.4985 1.2509 21 6 8.6412 2.1108 -0.0327 22 8 8.2274 0.8366 -0.1271 23 16 2.5435 -1.4248 0.0081 24 1 -0.3633 -0.0006 -1.0276 25 1 -0.3633 0.8902 0.5134 26 1 -0.3634 -0.8897 0.5142 27 1 1.9025 2.0875 -0.0004 28 1 5.3865 -1.9273 -0.4268 29 1 5.9729 -0.2554 -0.5972 30 1 4.2239 -2.1300 1.9896 31 1 5.7349 -3.0309 1.7184 32 1 4.2464 -4.6608 4.6655 33 1 7.6729 -1.2845 2.3878 34 1 7.6929 -1.6876 0.6541 35 1 7.8069 1.3600 3.0287 36 1 8.7876 3.4680 1.6537 37 1 8.9996 2.7205 -0.8488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180528858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:34 Heat of formation + Delta-G solvation = 45.713757 kcal Electronic energy + Delta-G solvation = -20803.660789 eV Core-core repulsion = 17673.980991 eV Total energy + Delta-G solvation = -3129.679798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.36017 -40.63507 -38.52184 -34.79025 -33.94584 -33.59472 -31.66723 -30.38572 -28.39181 -26.69157 -25.66179 -24.50890 -22.80384 -22.48999 -21.20372 -20.03362 -19.06792 -18.50575 -18.17952 -17.18553 -16.67036 -16.36740 -16.26593 -15.59855 -15.52267 -15.15452 -14.67755 -14.30850 -13.99150 -13.88484 -13.69179 -13.63046 -13.49062 -13.46117 -13.05145 -12.98971 -12.74158 -12.53326 -12.47366 -12.07691 -11.92701 -11.35481 -10.73800 -10.63142 -10.52258 -10.07809 -9.69283 -9.30617 -9.16110 -8.19890 -6.28454 -0.24241 0.44209 0.85606 0.89944 1.41207 1.42054 1.52598 1.79817 1.92495 2.18117 2.40448 3.13542 3.20430 3.40980 3.87025 4.01982 4.07621 4.22037 4.26438 4.28541 4.34169 4.46673 4.50974 4.69658 4.74395 4.91199 4.99321 5.05201 5.11851 5.14585 5.20205 5.31659 5.34919 5.62740 5.72076 5.99003 6.16258 6.32020 6.47452 6.84294 6.86597 7.39986 8.90799 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.008459 B = 0.007846 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.407444 B = 3568.067356 C = 6142.870634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.222 4.222 3 C 0.011 3.989 4 N -0.484 5.484 5 C 0.050 3.950 6 C 0.130 3.870 7 N -0.532 5.532 8 C 0.204 3.796 9 C -0.524 4.524 10 H 0.061 0.939 11 C 0.011 3.989 12 N -0.926 5.926 13 Si 0.960 3.040 14 H -0.279 1.279 15 H -0.280 1.280 16 H -0.264 1.264 17 C 0.145 3.855 18 C -0.013 4.013 19 C -0.209 4.209 20 C -0.224 4.224 21 C -0.042 4.042 22 O -0.192 6.192 23 S 0.114 5.886 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.197 0.803 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.023 0.977 31 H -0.025 1.025 32 H 0.265 0.735 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.137 0.863 36 H 0.168 0.832 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 9.399 -10.070 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.344 4.344 3 C -0.140 4.140 4 N -0.199 5.199 5 C -0.228 4.228 6 C -0.001 4.001 7 N -0.257 5.257 8 C 0.078 3.922 9 C -0.562 4.562 10 H 0.079 0.921 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.785 3.215 14 H -0.204 1.204 15 H -0.206 1.206 16 H -0.189 1.189 17 C 0.018 3.982 18 C -0.063 4.063 19 C -0.229 4.229 20 C -0.243 4.243 21 C -0.109 4.109 22 O -0.089 6.089 23 S 0.368 5.632 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.213 0.787 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.041 0.959 31 H -0.007 1.007 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.155 0.845 36 H 0.185 0.815 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.079 8.789 -10.032 13.381 hybrid contribution 0.074 0.056 0.933 0.937 sum -1.005 8.845 -9.100 12.729 Atomic orbital electron populations 1.20359 0.84087 1.04325 1.04216 1.26483 1.03170 0.94034 1.10695 1.22081 0.86451 1.01286 1.04173 1.66187 1.18944 1.19101 1.15642 1.26767 1.00642 0.91457 1.03953 1.20562 0.88424 0.99504 0.91598 1.61834 1.06357 1.45778 1.11771 1.19574 0.94774 0.84968 0.92868 1.21369 1.34802 1.07199 0.92847 0.92125 1.25746 0.94964 0.94795 1.03285 1.70056 1.38349 1.11773 1.36431 0.85523 0.78883 0.77432 0.79664 1.20449 1.20590 1.18872 1.20352 0.87125 0.88206 1.02544 1.22372 1.03468 0.97901 0.82530 1.21712 1.06217 0.93932 1.01015 1.22086 1.07079 1.00999 0.94137 1.24744 1.03296 0.82791 1.00039 1.83976 1.64434 1.28178 1.32322 1.84160 0.99223 1.12443 1.67359 0.88611 0.88472 0.91004 0.78672 0.92475 0.88576 0.95929 1.00700 0.92639 0.87762 0.93002 0.84548 0.81451 0.74300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.42 71.24 0.74 -0.62 16 2 C -0.22 -6.46 6.60 24.64 0.16 -6.30 16 3 C 0.01 0.33 11.25 83.65 0.94 1.27 16 4 N -0.48 -18.68 10.54 -191.44 -2.02 -20.70 16 5 C 0.05 1.94 6.38 88.52 0.56 2.50 16 6 C 0.13 5.09 5.39 85.56 0.46 5.55 16 7 N -0.53 -23.56 4.33 -909.95 -3.94 -27.50 16 8 C 0.20 10.53 4.55 85.55 0.39 10.92 16 9 C -0.52 -29.06 8.23 25.60 0.21 -28.85 16 10 H 0.06 3.34 7.31 -2.91 -0.02 3.32 16 11 C 0.01 0.62 5.46 84.65 0.46 1.08 16 12 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 13 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 C 0.15 5.77 5.33 85.56 0.46 6.23 16 18 C -0.01 -0.46 6.16 24.83 0.15 -0.31 16 19 C -0.21 -7.35 10.81 22.19 0.24 -7.11 16 20 C -0.22 -6.27 10.91 22.19 0.24 -6.03 16 21 C -0.04 -1.07 12.09 66.97 0.81 -0.26 16 22 O -0.19 -6.29 10.17 -2.62 -0.03 -6.32 16 23 S 0.11 3.98 22.04 -56.49 -1.24 2.73 16 24 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.20 4.75 8.06 -2.91 -0.02 4.72 16 28 H 0.06 2.11 8.00 -2.38 -0.02 2.09 16 29 H 0.10 3.60 6.90 -2.39 -0.02 3.58 16 30 H 0.02 1.25 6.40 -2.39 -0.02 1.23 16 31 H -0.02 -1.35 8.12 -2.38 -0.02 -1.37 16 32 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.10 4.43 6.58 -2.39 -0.02 4.42 16 34 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 35 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.24 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -68.10 331.07 1.98 -66.12 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.07 Total: 15.51 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 5.83 Total: -21.93 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -5.68 Total: -101.99 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.03 Total: -6.32 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.24 Total: 2.73 kcal Total: -68.10 1.98 -66.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180528858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.831 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds