Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46973 * 142.74229 * 3 2 1 5 5 N 1.46497 * 109.47220 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99948 * 274.96500 * 5 4 3 7 7 C 1.50705 * 109.47218 * 270.00242 * 6 5 4 8 8 H 1.08000 * 119.99197 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00044 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00207 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99815 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46982 * 90.00053 * 11 9 7 13 13 H 1.48504 * 109.46704 * 209.99402 * 11 9 7 14 14 H 1.48491 * 109.47187 * 329.99457 * 11 9 7 15 15 C 1.34770 * 120.00360 * 94.96495 * 5 4 3 16 16 O 1.21605 * 120.00260 * 185.56496 * 15 5 4 17 17 C 1.47453 * 119.99891 * 5.56326 * 15 5 4 18 18 C 1.39807 * 120.11234 * 55.03315 * 17 15 5 19 19 C 1.37604 * 119.93789 * 180.25520 * 18 17 15 20 20 C 1.39104 * 120.15867 * 359.44654 * 19 18 17 21 21 O 1.35703 * 119.88871 * 180.25663 * 20 19 18 22 22 C 1.38835 * 120.21773 * 0.55462 * 20 19 18 23 23 C 1.38055 * 120.06941 * 359.72447 * 22 20 19 24 24 F 1.35097 * 120.08169 * 179.97438 * 23 22 20 25 25 H 1.08991 * 109.47535 * 22.73759 * 3 2 1 26 26 H 1.09000 * 109.46769 * 262.73627 * 3 2 1 27 27 H 1.09005 * 109.47461 * 59.99339 * 4 3 2 28 28 H 1.09010 * 109.47082 * 299.99797 * 4 3 2 29 29 H 1.09005 * 109.46698 * 29.99902 * 6 5 4 30 30 H 1.08999 * 109.47248 * 149.99469 * 6 5 4 31 31 H 0.96993 * 120.00449 * 180.02562 * 10 9 7 32 32 H 1.08001 * 120.03279 * 359.97438 * 18 17 15 33 33 H 1.07997 * 119.92169 * 179.71787 * 19 18 17 34 34 H 0.96699 * 114.00210 * 270.29665 * 21 20 19 35 35 H 1.08010 * 119.96284 * 179.74454 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.1490 -0.8733 5 7 4.5824 1.1493 -0.8738 6 6 5.3152 1.8272 0.1985 7 6 5.5658 3.2608 -0.1926 8 1 5.2148 3.6299 -1.1450 9 6 6.2441 4.1008 0.6648 10 7 6.6720 3.6512 1.8243 11 14 6.5554 5.8776 0.1796 12 1 5.4258 6.7226 0.6435 13 1 7.8161 6.3485 0.8075 14 1 6.6719 5.9742 -1.2976 15 6 5.2561 0.5261 -1.8607 16 8 6.4679 0.4387 -1.8087 17 6 4.5238 -0.0499 -3.0037 18 6 3.6595 0.7495 -3.7577 19 6 2.9739 0.2070 -4.8203 20 6 3.1474 -1.1323 -5.1534 21 8 2.4725 -1.6604 -6.2056 22 6 4.0040 -1.9322 -4.4091 23 6 4.6921 -1.3989 -3.3376 24 9 5.5254 -2.1771 -2.6129 25 1 2.9718 -0.9469 -0.3972 26 1 2.9712 0.1308 1.0194 27 1 2.7536 2.0967 -0.4761 28 1 2.7541 1.0190 -1.8928 29 1 4.7263 1.7984 1.1154 30 1 6.2677 1.3233 0.3625 31 1 7.1489 4.2422 2.4277 32 1 3.5266 1.7908 -3.5036 33 1 2.3029 0.8237 -5.3997 34 1 1.6091 -2.0293 -5.9740 35 1 4.1325 -2.9727 -4.6689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181905613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -64.008846 kcal Electronic energy + Delta-G solvation = -22906.528666 eV Core-core repulsion = 19205.877763 eV Total energy + Delta-G solvation = -3700.650903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.92465 -40.20668 -38.97434 -36.89475 -36.53431 -35.31579 -32.92779 -31.08028 -30.89215 -30.25758 -27.27882 -24.41808 -23.86530 -23.07693 -22.28186 -19.30773 -18.95196 -17.72058 -16.99375 -16.87058 -16.61000 -16.38920 -16.00007 -15.48565 -15.11062 -14.74489 -14.58395 -14.25631 -14.19189 -13.81807 -13.68410 -13.11090 -12.88212 -12.48672 -12.34359 -12.28713 -12.13715 -11.87683 -11.62206 -11.32426 -11.05706 -11.00923 -10.86749 -10.67060 -10.25107 -9.77717 -9.32693 -9.11244 -8.77388 -8.51289 -7.93391 -6.13302 -4.18795 0.64748 0.94332 2.68988 2.79686 2.93333 3.25637 3.33325 3.35922 3.36126 3.58561 3.68487 4.10685 4.24689 4.37217 4.57700 4.76475 4.80022 5.01333 5.05652 5.14962 5.22032 5.40434 5.44592 5.67809 5.79430 5.80562 5.98065 6.01659 6.03763 6.45005 6.85475 7.27095 7.28319 7.35257 7.55449 7.81875 8.09848 8.12412 8.69725 8.87684 9.46991 10.94826 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.005055 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.774486 B = 5537.431279 C = 6188.935613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.219 3.781 3 C -0.050 4.050 4 C 0.108 3.892 5 N -0.587 5.587 6 C 0.243 3.757 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.553 3.447 16 O -0.515 6.515 17 C -0.159 4.159 18 C -0.046 4.046 19 C -0.160 4.160 20 C 0.146 3.854 21 O -0.494 6.494 22 C -0.189 4.189 23 C 0.157 3.843 24 F -0.121 7.121 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.265 0.735 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.395 0.605 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 -9.650 -10.300 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.099 4.099 3 C -0.091 4.091 4 C -0.018 4.018 5 N -0.318 5.318 6 C 0.125 3.875 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.339 3.661 16 O -0.391 6.391 17 C -0.163 4.163 18 C -0.065 4.065 19 C -0.178 4.178 20 C 0.101 3.899 21 O -0.305 6.305 22 C -0.208 4.208 23 C 0.137 3.863 24 F -0.099 7.099 25 H 0.123 0.877 26 H 0.137 0.863 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.252 0.748 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.304 -9.481 -10.352 17.413 hybrid contribution 0.364 0.706 0.160 0.811 sum -9.940 -8.775 -10.192 16.723 Atomic orbital electron populations 1.81199 1.12955 1.08927 1.09210 1.29073 0.95053 0.92939 0.92847 1.19843 0.81412 1.02551 1.05305 1.21536 0.82102 0.98182 0.99935 1.48135 1.05018 1.52443 1.26216 1.19431 0.92805 0.91742 0.83510 1.21391 1.37097 0.94968 1.03662 0.92289 1.24910 0.95167 0.98927 0.94856 1.69915 1.38005 1.36149 1.08935 0.86504 0.77767 0.84420 0.78796 1.20595 1.21062 1.19858 1.17830 0.87167 0.79022 0.82109 1.90831 1.13251 1.57731 1.77291 1.20399 1.01851 0.93241 1.00837 1.21114 0.92208 1.00190 0.92947 1.21415 1.02799 0.95195 0.98401 1.18244 0.93731 0.91081 0.86853 1.84771 1.35407 1.79191 1.31146 1.21280 1.01474 1.01994 0.96058 1.17354 0.90392 0.87642 0.90936 1.91575 1.68661 1.73740 1.75958 0.87694 0.86342 0.88619 0.90028 0.94387 0.93235 0.92571 0.83445 0.84212 0.74771 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.44 18.54 42.15 0.78 -5.66 16 2 C 0.22 2.66 15.43 -20.76 -0.32 2.34 16 3 C -0.05 -0.55 6.02 -29.52 -0.18 -0.73 16 4 C 0.11 1.44 5.18 -4.04 -0.02 1.42 16 5 N -0.59 -10.77 2.46 -176.31 -0.43 -11.20 16 6 C 0.24 5.68 5.23 -5.19 -0.03 5.65 16 7 C -0.53 -13.86 9.39 -34.44 -0.32 -14.18 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 11 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.55 10.68 6.83 -12.51 -0.09 10.60 16 16 O -0.52 -12.49 16.45 5.27 0.09 -12.40 16 17 C -0.16 -2.36 4.91 -104.90 -0.51 -2.88 16 18 C -0.05 -0.55 7.46 -39.23 -0.29 -0.84 16 19 C -0.16 -1.56 9.96 -39.49 -0.39 -1.95 16 20 C 0.15 1.44 6.71 -39.04 -0.26 1.18 16 21 O -0.49 -4.00 13.48 -18.81 -0.25 -4.25 16 22 C -0.19 -2.06 9.95 -39.43 -0.39 -2.45 16 23 C 0.16 2.18 7.27 -38.99 -0.28 1.90 16 24 F -0.12 -1.91 16.68 2.25 0.04 -1.87 16 25 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 28 H 0.08 0.92 4.41 -51.92 -0.23 0.69 16 29 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.15 1.64 7.57 -52.49 -0.40 1.24 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.40 1.21 9.06 45.56 0.41 1.63 16 35 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -33.71 324.65 -5.04 -38.75 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -2.67 Total: -1.39 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -3.19 Total: 1.68 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 1.08 Total: -41.19 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.17 Total: -16.65 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.71 -5.04 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181905613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.260 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds