Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46973 * 142.74229 * 3 2 1 5 5 N 1.46497 * 109.47220 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99948 * 274.96500 * 5 4 3 7 7 C 1.50705 * 109.47218 * 270.00242 * 6 5 4 8 8 H 1.08000 * 119.99197 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00044 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00207 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99815 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46982 * 90.00053 * 11 9 7 13 13 H 1.48504 * 109.46704 * 209.99402 * 11 9 7 14 14 H 1.48491 * 109.47187 * 329.99457 * 11 9 7 15 15 C 1.34770 * 120.00360 * 94.96495 * 5 4 3 16 16 O 1.21605 * 120.00260 * 185.56496 * 15 5 4 17 17 C 1.47453 * 119.99891 * 5.56326 * 15 5 4 18 18 C 1.39807 * 120.11234 * 55.03315 * 17 15 5 19 19 C 1.37604 * 119.93789 * 180.25520 * 18 17 15 20 20 C 1.39104 * 120.15867 * 359.44654 * 19 18 17 21 21 O 1.35703 * 119.88871 * 180.25663 * 20 19 18 22 22 C 1.38835 * 120.21773 * 0.55462 * 20 19 18 23 23 C 1.38055 * 120.06941 * 359.72447 * 22 20 19 24 24 F 1.35097 * 120.08169 * 179.97438 * 23 22 20 25 25 H 1.08991 * 109.47535 * 22.73759 * 3 2 1 26 26 H 1.09000 * 109.46769 * 262.73627 * 3 2 1 27 27 H 1.09005 * 109.47461 * 59.99339 * 4 3 2 28 28 H 1.09010 * 109.47082 * 299.99797 * 4 3 2 29 29 H 1.09005 * 109.46698 * 29.99902 * 6 5 4 30 30 H 1.08999 * 109.47248 * 149.99469 * 6 5 4 31 31 H 0.96993 * 120.00449 * 180.02562 * 10 9 7 32 32 H 1.08001 * 120.03279 * 359.97438 * 18 17 15 33 33 H 1.07997 * 119.92169 * 179.71787 * 19 18 17 34 34 H 0.96699 * 114.00210 * 270.29665 * 21 20 19 35 35 H 1.08010 * 119.96284 * 179.74454 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.1490 -0.8733 5 7 4.5824 1.1493 -0.8738 6 6 5.3152 1.8272 0.1985 7 6 5.5658 3.2608 -0.1926 8 1 5.2148 3.6299 -1.1450 9 6 6.2441 4.1008 0.6648 10 7 6.6720 3.6512 1.8243 11 14 6.5554 5.8776 0.1796 12 1 5.4258 6.7226 0.6435 13 1 7.8161 6.3485 0.8075 14 1 6.6719 5.9742 -1.2976 15 6 5.2561 0.5261 -1.8607 16 8 6.4679 0.4387 -1.8087 17 6 4.5238 -0.0499 -3.0037 18 6 3.6595 0.7495 -3.7577 19 6 2.9739 0.2070 -4.8203 20 6 3.1474 -1.1323 -5.1534 21 8 2.4725 -1.6604 -6.2056 22 6 4.0040 -1.9322 -4.4091 23 6 4.6921 -1.3989 -3.3376 24 9 5.5254 -2.1771 -2.6129 25 1 2.9718 -0.9469 -0.3972 26 1 2.9712 0.1308 1.0194 27 1 2.7536 2.0967 -0.4761 28 1 2.7541 1.0190 -1.8928 29 1 4.7263 1.7984 1.1154 30 1 6.2677 1.3233 0.3625 31 1 7.1489 4.2422 2.4277 32 1 3.5266 1.7908 -3.5036 33 1 2.3029 0.8237 -5.3997 34 1 1.6091 -2.0293 -5.9740 35 1 4.1325 -2.9727 -4.6689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181905613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -87.284115 kcal Electronic energy + Delta-G solvation = -22907.537957 eV Core-core repulsion = 19205.877763 eV Total energy + Delta-G solvation = -3701.660194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.03010 -41.35355 -40.07457 -38.04016 -37.41960 -36.76191 -34.84091 -32.22664 -32.00132 -31.31346 -29.00805 -25.59878 -25.43928 -24.02605 -23.55483 -20.64654 -19.74587 -18.90602 -18.43553 -18.14814 -17.86793 -17.62609 -17.17740 -16.70801 -16.37002 -15.92942 -15.78859 -15.60165 -15.35471 -14.83841 -14.78212 -14.45999 -14.22027 -13.81585 -13.63556 -13.51647 -13.35836 -12.99653 -12.95149 -12.84520 -12.63189 -12.49297 -12.18133 -11.95036 -11.72733 -11.68416 -10.84193 -10.58163 -10.03859 -9.76922 -9.51885 -8.17884 -6.30715 -0.29429 0.05972 1.41762 1.44448 1.53410 1.56377 1.76842 1.80031 2.14901 2.37732 2.46599 2.86096 3.03013 3.14658 3.34943 3.57886 3.72054 3.99886 4.02285 4.07956 4.19850 4.47617 4.59327 4.74199 4.78823 4.93096 4.97733 5.07463 5.11694 5.19090 5.32310 5.56220 5.61469 5.83751 6.10311 6.54819 6.60016 6.78131 6.80383 7.22829 7.41817 8.89417 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.005055 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.774486 B = 5537.431279 C = 6188.935613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.246 3.754 3 C -0.039 4.039 4 C 0.106 3.894 5 N -0.585 5.585 6 C 0.257 3.743 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.961 3.039 12 H -0.265 1.265 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.551 3.449 16 O -0.580 6.580 17 C -0.180 4.180 18 C -0.045 4.045 19 C -0.145 4.145 20 C 0.167 3.833 21 O -0.496 6.496 22 C -0.182 4.182 23 C 0.139 3.861 24 F -0.141 7.141 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.040 0.960 30 H 0.004 0.996 31 H 0.266 0.734 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.421 0.579 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.298 -9.552 -12.608 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.018 4.018 5 N -0.314 5.314 6 C 0.137 3.863 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.786 3.214 12 H -0.190 1.190 13 H -0.213 1.213 14 H -0.197 1.197 15 C 0.339 3.661 16 O -0.461 6.461 17 C -0.185 4.185 18 C -0.063 4.063 19 C -0.163 4.163 20 C 0.121 3.879 21 O -0.311 6.311 22 C -0.201 4.201 23 C 0.119 3.881 24 F -0.119 7.119 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.172 0.828 33 H 0.189 0.811 34 H 0.283 0.717 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.777 -9.401 -12.671 20.302 hybrid contribution 1.035 0.592 0.765 1.416 sum -11.742 -8.809 -11.905 18.900 Atomic orbital electron populations 1.81237 1.13903 1.10141 1.10418 1.28944 0.94693 0.91779 0.91701 1.19734 0.80726 1.02435 1.05114 1.21766 0.78839 0.99102 1.02139 1.47996 1.06979 1.51592 1.24883 1.18914 0.91542 0.90668 0.85201 1.21728 1.36701 0.96140 1.03479 0.92254 1.25744 0.95058 1.03070 0.94869 1.70031 1.38951 1.37582 1.10005 0.85513 0.77826 0.79733 0.78338 1.19024 1.21254 1.19666 1.18521 0.86668 0.78020 0.82896 1.90782 1.16212 1.60206 1.78870 1.20028 1.03874 0.94150 1.00398 1.21191 0.91697 1.00156 0.93284 1.21685 1.01978 0.95411 0.97269 1.18267 0.92674 0.90952 0.85992 1.84723 1.37002 1.79186 1.30181 1.21450 1.00752 1.03082 0.94860 1.17604 0.91117 0.87335 0.92044 1.91523 1.69554 1.74165 1.76705 0.86002 0.86089 0.88722 0.87360 0.94172 0.97828 0.92535 0.82799 0.81087 0.71683 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.03 18.54 20.01 0.37 -12.66 16 2 C 0.25 5.52 15.43 89.44 1.38 6.90 16 3 C -0.04 -0.81 6.02 28.79 0.17 -0.63 16 4 C 0.11 2.70 5.18 86.38 0.45 3.15 16 5 N -0.59 -21.91 2.46 -829.98 -2.04 -23.95 16 6 C 0.26 12.52 5.23 85.63 0.45 12.97 16 7 C -0.54 -28.81 9.39 25.60 0.24 -28.57 16 8 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.01 0.65 5.46 84.65 0.46 1.11 16 10 N -0.93 -53.42 13.29 21.45 0.28 -53.13 16 11 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 13 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 C 0.55 21.95 6.83 86.67 0.59 22.55 16 16 O -0.58 -29.88 16.45 -4.05 -0.07 -29.94 16 17 C -0.18 -5.25 4.91 -20.05 -0.10 -5.35 16 18 C -0.04 -0.95 7.46 22.50 0.17 -0.79 16 19 C -0.15 -2.22 9.96 22.33 0.22 -2.00 16 20 C 0.17 2.59 6.71 22.62 0.15 2.74 16 21 O -0.50 -5.53 13.48 -90.24 -1.22 -6.74 16 22 C -0.18 -3.48 9.95 22.37 0.22 -3.26 16 23 C 0.14 3.76 7.27 22.65 0.16 3.93 16 24 F -0.14 -4.56 16.68 44.97 0.75 -3.81 16 25 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.09 2.47 8.11 -2.38 -0.02 2.45 16 28 H 0.11 2.21 4.41 -2.38 -0.01 2.20 16 29 H 0.04 1.91 8.07 -2.38 -0.02 1.89 16 30 H 0.00 0.21 7.35 -2.39 -0.02 0.19 16 31 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.15 3.04 7.57 -2.91 -0.02 3.02 16 33 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.42 0.32 9.06 -74.06 -0.67 -0.36 16 35 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -76.60 324.65 5.17 -71.43 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 0.48 Total: 1.15 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 4.57 Total: 12.75 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -1.38 Total: -89.75 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.28 Total: -36.69 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.75 Total: -3.81 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.60 5.17 -71.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181905613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.854 kcal (2) G-P(sol) polarization free energy of solvation -76.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds