Wall clock time and date at job start Tue Mar 31 2020 07:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47911 * 110.99999 * 2 1 4 4 C 1.54596 * 102.62878 * 149.21649 * 3 2 1 5 5 C 1.51604 * 102.84957 * 334.48630 * 4 3 2 6 6 C 1.37988 * 131.46643 * 196.11907 * 5 4 3 7 7 C 1.38170 * 120.16864 * 179.08924 * 6 5 4 8 8 C 1.38947 * 119.81771 * 0.52689 * 7 6 5 9 9 N 1.39919 * 119.94534 * 179.86139 * 8 7 6 10 10 C 1.34777 * 120.00227 * 324.64590 * 9 8 7 11 11 O 1.21286 * 119.99811 * 4.62715 * 10 9 8 12 12 C 1.50696 * 120.00090 * 184.62208 * 10 9 8 13 13 S 1.81000 * 109.46995 * 180.02562 * 12 10 9 14 14 C 1.76199 * 100.00014 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00296 * 179.97438 * 14 13 12 17 17 N 1.31629 * 119.99544 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47039 * 60.00132 * 18 16 14 20 20 H 1.48497 * 109.46982 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47203 * 300.00405 * 18 16 14 22 22 C 1.38536 * 120.10761 * 359.59346 * 8 7 6 23 23 C 1.39027 * 107.93947 * 15.77584 * 5 4 3 24 24 H 1.08995 * 109.47327 * 300.05331 * 1 2 3 25 25 H 1.09013 * 109.46722 * 60.05570 * 1 2 3 26 26 H 1.09003 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09001 * 110.77455 * 30.93889 * 3 2 1 28 28 H 1.08996 * 110.77666 * 267.50507 * 3 2 1 29 29 H 1.09002 * 110.73769 * 216.14536 * 4 3 2 30 30 H 1.08995 * 110.89063 * 92.89700 * 4 3 2 31 31 H 1.08001 * 119.91511 * 359.35066 * 6 5 4 32 32 H 1.08008 * 120.08888 * 180.27899 * 7 6 5 33 33 H 0.97002 * 119.99656 * 144.92143 * 9 8 7 34 34 H 1.08994 * 109.47576 * 300.00328 * 12 10 9 35 35 H 1.09003 * 109.47031 * 60.00660 * 12 10 9 36 36 H 0.96997 * 119.99471 * 180.02562 * 17 16 14 37 37 H 1.08006 * 119.92720 * 180.27269 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3301 1.2320 0.7721 5 6 3.0837 0.0113 1.6367 6 6 3.7470 -0.4717 2.7461 7 6 3.3029 -1.6184 3.3760 8 6 2.1919 -2.2916 2.8829 9 7 1.7417 -3.4548 3.5169 10 6 2.6279 -4.3101 4.0643 11 8 3.8082 -4.0316 4.0816 12 6 2.1522 -5.6124 4.6548 13 16 3.5684 -6.5325 5.3060 14 6 2.7469 -7.9670 5.9159 15 1 1.6751 -8.0579 5.8185 16 6 3.4772 -8.9803 6.5214 17 7 4.7834 -8.8692 6.6404 18 14 2.6062 -10.5007 7.1686 19 1 1.9048 -11.1826 6.0513 20 1 3.6030 -11.4261 7.7647 21 1 1.6185 -10.1025 8.2036 22 6 1.5260 -1.8099 1.7676 23 6 1.9708 -0.6526 1.1330 24 1 -0.3634 0.5146 0.8895 25 1 -0.3633 0.5130 -0.8906 26 1 -0.3633 -1.0277 0.0005 27 1 1.3216 2.0551 0.5240 28 1 2.1791 1.7259 -1.0181 29 1 3.5187 2.1104 1.3893 30 1 4.1597 1.0584 0.0867 31 1 4.6129 0.0504 3.1256 32 1 3.8204 -1.9928 4.2470 33 1 0.7920 -3.6475 3.5591 34 1 1.4487 -5.4098 5.4622 35 1 1.6589 -6.2028 3.8826 36 1 5.2938 -9.5774 7.0633 37 1 0.6601 -2.3330 1.3894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183013103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:40 Heat of formation + Delta-G solvation = 7.289808 kcal Electronic energy + Delta-G solvation = -19877.437124 eV Core-core repulsion = 16746.091139 eV Total energy + Delta-G solvation = -3131.345985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96593 -39.60491 -36.76083 -34.33628 -32.47524 -32.44974 -30.00834 -29.81783 -27.55198 -25.96863 -25.50909 -23.06765 -22.03323 -21.28558 -19.95027 -18.06566 -17.33830 -16.63930 -16.26552 -16.03197 -15.52412 -14.91648 -14.82717 -14.60115 -14.10532 -13.90372 -13.65755 -13.36322 -13.28455 -12.97923 -12.64304 -12.37584 -12.23004 -12.02999 -11.75576 -11.59422 -11.08581 -11.06165 -11.05614 -10.80220 -10.50492 -9.87485 -9.72869 -9.38819 -9.08597 -8.33316 -8.29886 -7.69028 -6.54571 -6.24484 -3.95925 1.26743 1.37968 2.83755 2.94387 3.22053 3.24557 3.27833 3.44403 3.63016 3.83299 4.17205 4.37900 4.42601 4.78145 4.83173 4.92463 5.04029 5.08340 5.10804 5.24965 5.30637 5.35562 5.44707 5.47932 5.55483 5.63653 5.64509 5.74004 5.79501 6.05440 6.15200 6.25532 6.42282 6.53991 6.70061 6.78878 7.16675 7.51907 7.56729 8.31999 8.41240 9.20723 10.82907 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.044901 B = 0.002771 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.440896 B =10103.901529 C =10593.424405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.479 5.479 3 C 0.046 3.954 4 C -0.080 4.080 5 C -0.163 4.163 6 C -0.062 4.062 7 C -0.141 4.141 8 C 0.182 3.818 9 N -0.680 5.680 10 C 0.532 3.468 11 O -0.494 6.494 12 C -0.154 4.154 13 S -0.056 6.056 14 C -0.538 4.538 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.920 3.080 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C -0.167 4.167 23 C 0.107 3.893 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.409 0.591 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.270 0.730 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.487 20.153 -11.300 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.193 5.193 3 C -0.080 4.080 4 C -0.118 4.118 5 C -0.167 4.167 6 C -0.081 4.081 7 C -0.162 4.162 8 C 0.086 3.914 9 N -0.327 5.327 10 C 0.320 3.680 11 O -0.366 6.366 12 C -0.304 4.304 13 S 0.171 5.829 14 C -0.686 4.686 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.746 3.254 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.191 4.191 23 C 0.009 3.991 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.163 0.837 33 H 0.244 0.756 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.243 20.232 -11.704 24.470 hybrid contribution -2.685 -1.198 0.885 3.071 sum -9.928 19.034 -10.819 24.040 Atomic orbital electron populations 1.22553 0.85951 1.03115 1.01385 1.60595 1.09038 1.14521 1.35173 1.23266 0.95484 0.87794 1.01479 1.21230 0.97558 0.95873 0.97101 1.20426 0.98902 0.99175 0.98155 1.20283 0.98625 0.95328 0.93883 1.21264 0.97921 0.94689 1.02278 1.17399 0.95549 0.86679 0.91775 1.43649 1.10808 1.20811 1.57413 1.20524 0.85956 0.84681 0.76869 1.90706 1.16562 1.75349 1.54014 1.23544 1.07306 0.95983 1.03588 1.85420 1.05071 1.17882 1.74573 1.22819 0.95897 1.04800 1.45050 0.90891 1.24997 0.94922 0.98370 0.95262 1.70003 1.05457 1.33655 1.41112 0.86209 0.79042 0.81086 0.79080 1.19918 1.20784 1.19911 1.20008 1.04207 0.98472 0.96389 1.19233 0.95876 0.94925 0.89111 0.94329 0.90721 0.90678 0.92259 0.88839 0.90248 0.89638 0.85745 0.83721 0.75559 0.88803 0.88795 0.92062 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.16 60.07 0.55 0.68 16 2 N -0.48 -4.89 5.31 -176.85 -0.94 -5.82 16 3 C 0.05 0.36 6.91 -2.43 -0.02 0.34 16 4 C -0.08 -0.70 7.04 -26.60 -0.19 -0.88 16 5 C -0.16 -1.95 6.23 -103.98 -0.65 -2.60 16 6 C -0.06 -0.80 10.02 -39.70 -0.40 -1.20 16 7 C -0.14 -2.13 8.70 -39.34 -0.34 -2.47 16 8 C 0.18 2.61 6.28 -83.79 -0.53 2.09 16 9 N -0.68 -9.57 5.33 -9.93 -0.05 -9.63 16 10 C 0.53 9.81 7.69 -10.99 -0.08 9.73 16 11 O -0.49 -10.90 13.30 5.55 0.07 -10.83 16 12 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 13 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 14 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 15 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 16 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 18 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C -0.17 -2.10 9.44 -39.08 -0.37 -2.47 16 23 C 0.11 1.31 5.95 -83.42 -0.50 0.81 16 24 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 25 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 26 H 0.07 0.56 7.30 -51.93 -0.38 0.18 16 27 H 0.06 0.40 7.84 -51.93 -0.41 -0.01 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.15 2.46 6.24 -52.48 -0.33 2.13 16 33 H 0.41 4.27 8.82 -40.82 -0.36 3.91 16 34 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.12 1.30 7.37 -52.48 -0.39 0.91 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -34.13 325.86 -9.39 -43.52 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.78 Total: 2.17 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.10 Total: -11.58 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.26 Total: -40.68 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.13 -9.39 -43.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183013103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.807 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds