Wall clock time and date at job start Tue Mar 31 2020 07:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47911 * 110.99999 * 2 1 4 4 C 1.54596 * 102.62878 * 149.21649 * 3 2 1 5 5 C 1.51604 * 102.84957 * 334.48630 * 4 3 2 6 6 C 1.37988 * 131.46643 * 196.11907 * 5 4 3 7 7 C 1.38170 * 120.16864 * 179.08924 * 6 5 4 8 8 C 1.38947 * 119.81771 * 0.52689 * 7 6 5 9 9 N 1.39919 * 119.94534 * 179.86139 * 8 7 6 10 10 C 1.34777 * 120.00227 * 324.64590 * 9 8 7 11 11 O 1.21286 * 119.99811 * 4.62715 * 10 9 8 12 12 C 1.50696 * 120.00090 * 184.62208 * 10 9 8 13 13 S 1.81000 * 109.46995 * 180.02562 * 12 10 9 14 14 C 1.76199 * 100.00014 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00296 * 179.97438 * 14 13 12 17 17 N 1.31629 * 119.99544 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47039 * 60.00132 * 18 16 14 20 20 H 1.48497 * 109.46982 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47203 * 300.00405 * 18 16 14 22 22 C 1.38536 * 120.10761 * 359.59346 * 8 7 6 23 23 C 1.39027 * 107.93947 * 15.77584 * 5 4 3 24 24 H 1.08995 * 109.47327 * 300.05331 * 1 2 3 25 25 H 1.09013 * 109.46722 * 60.05570 * 1 2 3 26 26 H 1.09003 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09001 * 110.77455 * 30.93889 * 3 2 1 28 28 H 1.08996 * 110.77666 * 267.50507 * 3 2 1 29 29 H 1.09002 * 110.73769 * 216.14536 * 4 3 2 30 30 H 1.08995 * 110.89063 * 92.89700 * 4 3 2 31 31 H 1.08001 * 119.91511 * 359.35066 * 6 5 4 32 32 H 1.08008 * 120.08888 * 180.27899 * 7 6 5 33 33 H 0.97002 * 119.99656 * 144.92143 * 9 8 7 34 34 H 1.08994 * 109.47576 * 300.00328 * 12 10 9 35 35 H 1.09003 * 109.47031 * 60.00660 * 12 10 9 36 36 H 0.96997 * 119.99471 * 180.02562 * 17 16 14 37 37 H 1.08006 * 119.92720 * 180.27269 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3301 1.2320 0.7721 5 6 3.0837 0.0113 1.6367 6 6 3.7470 -0.4717 2.7461 7 6 3.3029 -1.6184 3.3760 8 6 2.1919 -2.2916 2.8829 9 7 1.7417 -3.4548 3.5169 10 6 2.6279 -4.3101 4.0643 11 8 3.8082 -4.0316 4.0816 12 6 2.1522 -5.6124 4.6548 13 16 3.5684 -6.5325 5.3060 14 6 2.7469 -7.9670 5.9159 15 1 1.6751 -8.0579 5.8185 16 6 3.4772 -8.9803 6.5214 17 7 4.7834 -8.8692 6.6404 18 14 2.6062 -10.5007 7.1686 19 1 1.9048 -11.1826 6.0513 20 1 3.6030 -11.4261 7.7647 21 1 1.6185 -10.1025 8.2036 22 6 1.5260 -1.8099 1.7676 23 6 1.9708 -0.6526 1.1330 24 1 -0.3634 0.5146 0.8895 25 1 -0.3633 0.5130 -0.8906 26 1 -0.3633 -1.0277 0.0005 27 1 1.3216 2.0551 0.5240 28 1 2.1791 1.7259 -1.0181 29 1 3.5187 2.1104 1.3893 30 1 4.1597 1.0584 0.0867 31 1 4.6129 0.0504 3.1256 32 1 3.8204 -1.9928 4.2470 33 1 0.7920 -3.6475 3.5591 34 1 1.4487 -5.4098 5.4622 35 1 1.6589 -6.2028 3.8826 36 1 5.2938 -9.5774 7.0633 37 1 0.6601 -2.3330 1.3894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183013103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:40 Heat of formation + Delta-G solvation = -15.906795 kcal Electronic energy + Delta-G solvation = -19878.443004 eV Core-core repulsion = 16746.091139 eV Total energy + Delta-G solvation = -3132.351865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.93621 -40.82986 -37.84459 -35.48917 -34.59037 -33.35339 -31.23690 -30.89209 -28.64128 -27.63656 -26.66518 -23.92658 -23.22182 -22.12027 -21.16038 -19.91730 -18.53786 -18.03088 -17.18915 -16.88242 -16.86736 -16.66757 -16.22697 -15.87581 -15.43041 -15.01866 -14.71138 -14.58480 -14.39646 -14.14577 -13.87716 -13.53713 -13.20221 -13.12519 -12.91247 -12.86736 -12.63865 -12.44825 -12.32138 -11.97694 -11.77093 -11.55201 -11.13211 -11.02212 -10.55152 -10.30511 -9.34103 -8.69190 -8.61232 -8.35202 -6.13695 0.22288 0.38743 1.22099 1.43747 1.44200 1.50757 1.55522 2.09122 2.26461 2.63832 2.90146 2.99167 3.27904 3.62425 3.72376 3.80236 4.02637 4.19716 4.24667 4.27694 4.31444 4.45454 4.49184 4.54579 4.56463 4.68817 4.76061 4.91138 4.93640 5.04397 5.20706 5.28865 5.40643 5.41582 5.52685 5.72722 5.98241 6.19130 6.19709 6.35801 7.05990 7.07848 8.73771 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.044901 B = 0.002771 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.440896 B =10103.901529 C =10593.424405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.491 5.491 3 C 0.047 3.953 4 C -0.080 4.080 5 C -0.169 4.169 6 C -0.069 4.069 7 C -0.167 4.167 8 C 0.161 3.839 9 N -0.657 5.657 10 C 0.535 3.465 11 O -0.539 6.539 12 C -0.128 4.128 13 S -0.147 6.147 14 C -0.547 4.547 15 H 0.085 0.915 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 0.999 3.001 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.261 1.261 22 C -0.165 4.165 23 C 0.103 3.897 24 H 0.042 0.958 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.428 0.572 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.271 0.729 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 21.190 -12.743 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.206 5.206 3 C -0.079 4.079 4 C -0.117 4.117 5 C -0.172 4.172 6 C -0.088 4.088 7 C -0.188 4.188 8 C 0.066 3.934 9 N -0.304 5.304 10 C 0.322 3.678 11 O -0.414 6.414 12 C -0.279 4.279 13 S 0.080 5.920 14 C -0.695 4.695 15 H 0.103 0.897 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.186 1.186 22 C -0.189 4.189 23 C 0.004 3.996 24 H 0.061 0.939 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.156 0.844 32 H 0.134 0.866 33 H 0.267 0.733 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.960 21.312 -13.179 26.964 hybrid contribution -1.904 -1.322 1.193 2.607 sum -11.864 19.990 -11.986 26.154 Atomic orbital electron populations 1.22646 0.84332 1.03586 1.02590 1.60618 1.10578 1.15767 1.33592 1.23418 0.94952 0.86766 1.02738 1.21352 0.98404 0.95022 0.96916 1.20846 0.98437 1.00252 0.97676 1.20432 0.99184 0.94797 0.94345 1.21168 0.98884 0.96303 1.02428 1.17499 0.96151 0.86792 0.92934 1.43257 1.11144 1.19955 1.56079 1.20298 0.85753 0.84790 0.76936 1.90703 1.18512 1.76184 1.56035 1.23356 1.04101 0.95797 1.04642 1.85609 1.10841 1.19806 1.75725 1.23179 0.96444 1.04946 1.44929 0.89697 1.26139 0.95642 1.02055 0.95344 1.70176 1.07398 1.34937 1.42276 0.84996 0.77844 0.76362 0.78752 1.18658 1.20480 1.18583 1.20132 1.04446 0.98708 0.95583 1.19526 0.95918 0.94761 0.89372 0.93884 0.88729 0.90686 0.90759 0.86866 0.88322 0.89219 0.84403 0.86571 0.73319 0.86472 0.86661 0.91974 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.16 127.69 1.17 1.34 16 2 N -0.49 -8.58 5.31 -713.44 -3.79 -12.37 16 3 C 0.05 0.56 6.91 86.65 0.60 1.16 16 4 C -0.08 -1.17 7.04 30.68 0.22 -0.95 16 5 C -0.17 -3.79 6.23 -19.45 -0.12 -3.91 16 6 C -0.07 -1.77 10.02 22.19 0.22 -1.55 16 7 C -0.17 -5.24 8.70 22.42 0.20 -5.05 16 8 C 0.16 4.61 6.28 38.09 0.24 4.85 16 9 N -0.66 -18.11 5.33 -303.71 -1.62 -19.73 16 10 C 0.53 19.97 7.69 87.66 0.67 20.65 16 11 O -0.54 -24.95 13.30 -3.05 -0.04 -24.99 16 12 C -0.13 -4.96 6.16 71.23 0.44 -4.52 16 13 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 14 C -0.55 -30.95 9.50 67.96 0.65 -30.31 16 15 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 16 C 0.01 0.74 5.49 84.86 0.47 1.20 16 17 N -0.91 -55.94 13.22 21.65 0.29 -55.66 16 18 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.17 -3.91 9.44 22.59 0.21 -3.69 16 23 C 0.10 2.33 5.95 38.27 0.23 2.56 16 24 H 0.04 0.50 8.09 -2.39 -0.02 0.48 16 25 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.07 0.91 7.30 -2.39 -0.02 0.89 16 27 H 0.07 0.70 7.84 -2.39 -0.02 0.68 16 28 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.12 4.29 6.24 -2.91 -0.02 4.27 16 33 H 0.43 8.16 8.82 -92.71 -0.82 7.35 16 34 H 0.12 4.00 8.14 -2.40 -0.02 3.98 16 35 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.14 2.68 7.37 -2.91 -0.02 2.66 16 Total: -1.00 -76.89 325.86 1.16 -75.73 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.27 Total: 19.13 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 5.18 Total: -18.23 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -5.12 Total: -87.76 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.04 Total: -24.99 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -76.89 1.16 -75.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183013103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.824 kcal (2) G-P(sol) polarization free energy of solvation -76.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds