Wall clock time and date at job start Tue Mar 31 2020 06:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35991 * 116.99773 * 2 1 4 4 C 1.39118 * 119.84561 * 359.97438 * 3 2 1 5 5 C 1.37668 * 120.44509 * 179.97438 * 4 3 2 6 6 C 1.39710 * 119.84618 * 0.04411 * 5 4 3 7 7 N 1.36028 * 133.29489 * 179.97438 * 6 5 4 8 8 C 1.30981 * 109.60851 * 180.02562 * 7 6 5 9 9 S 1.76203 * 125.08006 * 179.97438 * 8 7 6 10 10 C 1.81008 * 99.99621 * 0.04017 * 9 8 7 11 11 H 1.08998 * 109.46919 * 304.99813 * 10 9 8 12 12 C 1.53000 * 109.46842 * 65.00177 * 10 9 8 13 13 C 1.52999 * 109.46511 * 185.00017 * 10 9 8 14 14 C 1.50700 * 109.47494 * 65.00420 * 13 10 9 15 15 H 1.08002 * 119.99858 * 359.97438 * 14 13 10 16 16 C 1.37870 * 120.00358 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00503 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99731 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47242 * 89.99971 * 18 16 14 20 20 H 1.48500 * 109.47102 * 209.99907 * 18 16 14 21 21 H 1.48498 * 109.47077 * 329.99688 * 18 16 14 22 22 N 1.36705 * 109.84608 * 0.02562 * 8 7 6 23 23 H 0.96998 * 126.37810 * 179.73971 * 22 8 7 24 24 C 1.38534 * 107.24410 * 359.97438 * 22 8 7 25 25 C 1.38386 * 119.83811 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47424 * 59.99449 * 1 2 3 27 27 H 1.09004 * 109.47476 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47333 * 299.99947 * 1 2 3 29 29 H 1.07996 * 119.77482 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.07878 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.47310 * 299.99373 * 12 10 9 32 32 H 1.08998 * 109.47660 * 60.00090 * 12 10 9 33 33 H 1.09003 * 109.46246 * 179.97438 * 12 10 9 34 34 H 1.09005 * 109.46372 * 185.00075 * 13 10 9 35 35 H 1.09003 * 109.47459 * 304.99567 * 13 10 9 36 36 H 0.97000 * 120.00542 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.09559 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2854 2.3764 -0.0005 5 6 1.8975 3.6095 0.0000 6 6 3.2921 3.6935 0.0001 7 7 4.1637 4.7379 0.0002 8 6 5.3926 4.2848 -0.0002 9 16 6.8416 5.2874 -0.0010 10 6 6.0856 6.9321 0.0002 11 1 5.3977 7.0163 -0.8410 12 6 5.3198 7.1403 1.3083 13 6 7.1783 7.9955 -0.1259 14 6 7.8516 7.8673 -1.4681 15 1 7.5324 7.1034 -2.1615 16 6 8.8751 8.7252 -1.8107 17 7 9.4630 8.6129 -2.9817 18 14 9.4268 10.0470 -0.6115 19 1 10.5030 9.5082 0.2585 20 1 9.9406 11.2176 -1.3671 21 1 8.2753 10.4659 0.2274 22 7 5.3832 2.9178 -0.0011 23 1 6.1602 2.3371 -0.0051 24 6 4.0574 2.5162 -0.0007 25 6 3.4285 1.2803 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.2073 2.3127 -0.0014 30 1 1.3011 4.5098 0.0000 31 1 4.5414 6.3827 1.3982 32 1 6.0077 7.0561 2.1496 33 1 4.8650 8.1309 1.3091 34 1 6.7329 8.9864 -0.0361 35 1 7.9150 7.8553 0.6651 36 1 10.1829 9.2167 -3.2229 37 1 4.0157 0.3738 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188187506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:37 Heat of formation + Delta-G solvation = 6.609780 kcal Electronic energy + Delta-G solvation = -20033.930852 eV Core-core repulsion = 16902.555378 eV Total energy + Delta-G solvation = -3131.375474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.95487 -40.41281 -36.92318 -36.51731 -34.36839 -33.91641 -31.24278 -30.25518 -29.57501 -27.83330 -24.95364 -24.64561 -23.22460 -22.53898 -22.11554 -19.63843 -18.98109 -18.87435 -17.84781 -17.06774 -16.74197 -16.66138 -16.45475 -16.16900 -15.92222 -14.97035 -14.85101 -14.56062 -14.23173 -14.04678 -13.90095 -13.43953 -13.19555 -13.17594 -13.07896 -12.66811 -12.33966 -12.09132 -12.00090 -11.77698 -11.67968 -11.50733 -11.38976 -11.14668 -10.97764 -10.73104 -9.76222 -9.22791 -8.29527 -8.21686 -6.29366 -0.14055 0.18884 0.42433 1.24433 1.39400 1.40915 1.51586 1.57230 1.91544 2.38553 2.57306 2.76518 3.10622 3.41952 3.86427 4.01340 4.04246 4.13876 4.21479 4.35227 4.46249 4.47741 4.48626 4.53652 4.78869 4.90542 4.92000 5.00068 5.09547 5.12573 5.23573 5.29641 5.34396 5.41350 5.60450 5.63494 6.17912 6.29150 6.38654 6.67993 6.77952 7.33871 8.91283 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.041588 B = 0.003133 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.113197 B = 8935.674386 C = 9151.597977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.141 3.859 4 C -0.193 4.193 5 C -0.035 4.035 6 C -0.008 4.008 7 N -0.508 5.508 8 C 0.253 3.747 9 S -0.004 6.004 10 C -0.040 4.040 11 H 0.076 0.924 12 C -0.139 4.139 13 C 0.003 3.997 14 C -0.526 4.526 15 H 0.041 0.959 16 C 0.009 3.991 17 N -0.948 5.948 18 Si 0.942 3.058 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.241 1.241 22 N -0.580 5.580 23 H 0.437 0.563 24 C 0.081 3.919 25 C -0.163 4.163 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.169 0.831 30 H 0.146 0.854 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.031 0.969 36 H 0.265 0.735 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.551 -15.360 10.309 25.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.094 3.906 4 C -0.213 4.213 5 C -0.055 4.055 6 C -0.127 4.127 7 N -0.233 5.233 8 C -0.122 4.122 9 S 0.228 5.772 10 C -0.169 4.169 11 H 0.095 0.905 12 C -0.198 4.198 13 C -0.036 4.036 14 C -0.564 4.564 15 H 0.059 0.941 16 C -0.188 4.188 17 N -0.589 5.589 18 Si 0.766 3.234 19 H -0.193 1.193 20 H -0.213 1.213 21 H -0.164 1.164 22 N -0.196 5.196 23 H 0.278 0.722 24 C -0.031 4.031 25 C -0.185 4.185 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.088 0.912 29 H 0.186 0.814 30 H 0.164 0.836 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.459 -14.899 10.201 24.432 hybrid contribution -0.028 0.026 -0.271 0.274 sum -16.487 -14.873 9.929 24.323 Atomic orbital electron populations 1.23415 0.75990 1.05771 1.02646 1.86054 1.23746 1.25867 1.88590 1.18499 0.91001 0.85044 0.96077 1.21304 1.01605 0.90288 1.08114 1.20334 0.89764 0.98931 0.96497 1.19559 0.95314 0.88566 1.09295 1.70961 0.97751 1.30238 1.24351 1.25772 0.99210 0.84845 1.02364 1.86051 0.99285 1.00492 1.91323 1.23187 0.99855 0.91562 1.02323 0.90545 1.22077 1.00225 1.03217 0.94300 1.19503 0.93525 0.94482 0.96088 1.21379 1.17400 1.16486 1.01164 0.94066 1.25925 0.96172 0.99864 0.96869 1.70062 1.25624 1.39999 1.23201 0.85772 0.79811 0.78542 0.79297 1.19265 1.21293 1.16387 1.42862 1.07214 1.05769 1.63746 0.72179 1.18644 0.83970 0.95953 1.04575 1.18951 0.92399 0.94703 1.12458 0.91450 0.86219 0.91249 0.81375 0.83589 0.91120 0.91519 0.90743 0.93382 0.95088 0.92574 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.90 10.49 -93.45 -0.98 -6.88 16 3 C 0.14 3.00 6.68 22.52 0.15 3.15 16 4 C -0.19 -3.66 9.01 22.35 0.20 -3.46 16 5 C -0.03 -0.86 10.09 22.49 0.23 -0.63 16 6 C -0.01 -0.26 7.22 39.38 0.28 0.03 16 7 N -0.51 -18.45 8.64 -188.33 -1.63 -20.08 16 8 C 0.25 8.90 7.92 179.58 1.42 10.32 16 9 S 0.00 -0.14 21.07 -56.49 -1.19 -1.33 16 10 C -0.04 -1.59 2.25 30.59 0.07 -1.52 16 11 H 0.08 3.35 8.13 -2.40 -0.02 3.33 16 12 C -0.14 -4.56 9.00 71.98 0.65 -3.91 16 13 C 0.00 0.13 3.51 29.85 0.10 0.24 16 14 C -0.53 -29.49 9.09 25.60 0.23 -29.25 16 15 H 0.04 2.58 7.84 -2.91 -0.02 2.56 16 16 C 0.01 0.51 5.47 84.65 0.46 0.97 16 17 N -0.95 -59.05 13.96 21.44 0.30 -58.75 16 18 Si 0.94 43.07 27.47 68.60 1.88 44.96 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 22 N -0.58 -16.92 6.28 -187.36 -1.18 -18.10 16 23 H 0.44 10.01 8.96 -92.71 -0.83 9.18 16 24 C 0.08 2.35 7.29 38.72 0.28 2.63 16 25 C -0.16 -3.91 10.00 22.41 0.22 -3.69 16 26 H 0.07 0.47 7.65 -2.39 -0.02 0.45 16 27 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.07 0.45 7.65 -2.39 -0.02 0.43 16 29 H 0.17 1.92 6.26 -2.91 -0.02 1.90 16 30 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 31 H 0.07 2.36 5.86 -2.39 -0.01 2.34 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.05 2.10 7.20 -2.38 -0.02 2.09 16 35 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -70.75 321.97 2.84 -67.91 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.21 Total: 16.16 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 5.42 Total: -23.88 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -2.50 Total: -96.93 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.98 Total: -6.88 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.96 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.19 Total: -1.33 kcal Total: -70.75 2.84 -67.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188187506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.517 kcal (2) G-P(sol) polarization free energy of solvation -70.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds