Wall clock time and date at job start Tue Mar 31 2020 06:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35987 * 117.00134 * 2 1 4 4 C 1.39123 * 119.84103 * 359.97438 * 3 2 1 5 5 C 1.37662 * 120.44343 * 179.97438 * 4 3 2 6 6 C 1.39702 * 119.85316 * 0.05262 * 5 4 3 7 7 N 1.36024 * 133.30287 * 179.97438 * 6 5 4 8 8 C 1.30985 * 109.60925 * 179.69396 * 7 6 5 9 9 S 1.76208 * 125.07963 * 180.27069 * 8 7 6 10 10 C 1.81004 * 99.99853 * 0.20781 * 9 8 7 11 11 H 1.08995 * 109.47003 * 54.99692 * 10 9 8 12 12 C 1.53005 * 109.46549 * 295.00053 * 10 9 8 13 13 C 1.52993 * 109.47144 * 175.00409 * 10 9 8 14 14 C 1.50701 * 109.46831 * 294.99659 * 13 10 9 15 15 H 1.08002 * 120.00104 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00383 * 180.02562 * 14 13 10 17 17 N 1.31521 * 119.99557 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00462 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47173 * 59.99896 * 18 16 14 20 20 H 1.48506 * 109.47405 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47123 * 299.99988 * 18 16 14 22 22 N 1.36704 * 109.84603 * 0.44968 * 8 7 6 23 23 H 0.97001 * 126.38226 * 179.82350 * 22 8 7 24 24 C 1.38533 * 107.24439 * 359.55376 * 22 8 7 25 25 C 1.38382 * 119.84591 * 180.02562 * 3 2 1 26 26 H 1.08991 * 109.47319 * 60.00195 * 1 2 3 27 27 H 1.09007 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47091 * 299.99925 * 1 2 3 29 29 H 1.08001 * 119.77847 * 0.02946 * 4 3 2 30 30 H 1.08001 * 120.07761 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.47479 * 60.00231 * 12 10 9 32 32 H 1.08998 * 109.46749 * 180.02562 * 12 10 9 33 33 H 1.08995 * 109.47173 * 299.99535 * 12 10 9 34 34 H 1.09002 * 109.47515 * 54.99474 * 13 10 9 35 35 H 1.08996 * 109.47573 * 175.00156 * 13 10 9 36 36 H 0.96999 * 120.00030 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.08925 * 359.96008 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2855 2.3763 -0.0005 5 6 1.8976 3.6094 0.0000 6 6 3.2920 3.6936 0.0000 7 7 4.1636 4.7379 -0.0001 8 6 5.3926 4.2848 0.0065 9 16 6.8416 5.2874 0.0158 10 6 6.0857 6.9321 0.0196 11 1 5.3953 7.0126 0.8592 12 6 5.3235 7.1460 -1.2898 13 6 7.1779 7.9950 0.1535 14 6 7.8473 7.8609 1.4969 15 1 7.5262 7.0939 2.1861 16 6 8.8699 8.7172 1.8463 17 7 9.2613 9.6510 1.0068 18 14 9.6992 8.5515 3.5118 19 1 10.3058 7.2012 3.6305 20 1 10.7586 9.5839 3.6423 21 1 8.6920 8.7378 4.5870 22 7 5.3832 2.9178 0.0010 23 1 6.1602 2.3371 0.0016 24 6 4.0574 2.5161 0.0008 25 6 3.4285 1.2803 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2073 2.3127 -0.0005 30 1 1.3011 4.5098 0.0000 31 1 4.5454 6.3887 -1.3852 32 1 4.8687 8.1365 -1.2877 33 1 6.0139 7.0654 -2.1293 34 1 7.9169 7.8581 -0.6360 35 1 6.7329 8.9862 0.0667 36 1 9.9804 10.2537 1.2527 37 1 4.0157 0.3738 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188187533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:39 Heat of formation + Delta-G solvation = 21.810947 kcal Electronic energy + Delta-G solvation = -20014.091748 eV Core-core repulsion = 16883.375447 eV Total energy + Delta-G solvation = -3130.716301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.81557 -39.55504 -35.96122 -34.64335 -33.01049 -32.02295 -30.24907 -28.99455 -27.49688 -27.09879 -23.53802 -23.30741 -22.15066 -21.40758 -20.52636 -18.62407 -17.84332 -16.82947 -16.37588 -15.96603 -15.81701 -15.57896 -15.08591 -14.64418 -14.41767 -13.95602 -13.64450 -13.00896 -12.97107 -12.60334 -12.48458 -12.30549 -11.82430 -11.59313 -11.26087 -11.18127 -11.02238 -10.87719 -10.67713 -10.58612 -10.34754 -9.85566 -9.55677 -9.49131 -9.20964 -8.63861 -8.41699 -8.12868 -6.93890 -6.06704 -4.09372 0.92877 1.43738 1.59782 2.73036 2.77057 2.95103 3.32536 3.36518 3.39854 3.48928 3.81986 4.42476 4.46781 4.73869 4.84099 4.90418 5.07698 5.11158 5.21021 5.30568 5.36749 5.49005 5.76688 5.86054 5.89728 6.09118 6.17716 6.23970 6.33729 6.57861 6.62663 6.64726 6.85984 7.20663 7.25453 7.48532 7.53462 7.88509 7.90176 8.26259 8.95456 9.55180 11.04196 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032913 B = 0.003190 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.518258 B = 8775.660847 C = 9062.206706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.132 3.868 4 C -0.206 4.206 5 C -0.029 4.029 6 C 0.031 3.969 7 N -0.490 5.490 8 C 0.269 3.731 9 S 0.008 5.992 10 C -0.050 4.050 11 H 0.093 0.907 12 C -0.148 4.148 13 C 0.036 3.964 14 C -0.525 4.525 15 H 0.063 0.937 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.276 1.276 22 N -0.590 5.590 23 H 0.425 0.575 24 C 0.086 3.914 25 C -0.150 4.150 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.701 -16.740 -3.791 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.227 4.227 5 C -0.050 4.050 6 C -0.089 4.089 7 N -0.215 5.215 8 C -0.104 4.104 9 S 0.241 5.759 10 C -0.179 4.179 11 H 0.111 0.889 12 C -0.207 4.207 13 C -0.003 4.003 14 C -0.563 4.563 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 N -0.205 5.205 23 H 0.264 0.736 24 C -0.027 4.027 25 C -0.173 4.173 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.593 -16.177 -3.812 21.471 hybrid contribution -0.358 -0.675 0.969 1.234 sum -13.951 -16.853 -2.843 22.062 Atomic orbital electron populations 1.23036 0.78407 1.03731 1.01452 1.86040 1.21277 1.26730 1.89168 1.18326 0.91089 0.84083 0.97987 1.20945 0.99867 0.91533 1.10380 1.20039 0.90784 0.97400 0.96759 1.19125 0.94037 0.88648 1.07083 1.71103 0.97191 1.28713 1.24463 1.26352 1.00076 0.83928 1.00069 1.86203 0.98303 1.01124 1.90265 1.23628 1.01643 0.91537 1.01055 0.88911 1.22138 1.00277 1.02344 0.95984 1.19117 0.91414 0.91753 0.98012 1.21229 1.17693 1.16259 1.01140 0.91885 1.24987 0.96845 0.95111 0.97164 1.69944 1.28862 1.18742 1.35658 0.86637 0.79155 0.77853 0.84320 1.20062 1.21317 1.20147 1.42981 1.06456 1.06606 1.64478 0.73574 1.18429 0.84327 0.95456 1.04453 1.18728 0.91508 0.94935 1.12088 0.92612 0.88417 0.92605 0.84952 0.84938 0.91346 0.92076 0.92765 0.95484 0.94076 0.92790 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.49 -19.70 -0.21 -3.57 16 3 C 0.13 1.58 6.68 -39.20 -0.26 1.32 16 4 C -0.21 -2.29 9.01 -39.46 -0.36 -2.64 16 5 C -0.03 -0.39 10.09 -39.25 -0.40 -0.78 16 6 C 0.03 0.50 7.22 -84.63 -0.61 -0.11 16 7 N -0.49 -8.90 8.63 -10.88 -0.09 -9.00 16 8 C 0.27 4.68 7.92 -88.43 -0.70 3.98 16 9 S 0.01 0.16 21.07 -107.50 -2.26 -2.11 16 10 C -0.05 -1.02 2.25 -26.73 -0.06 -1.08 16 11 H 0.09 2.00 8.14 -51.92 -0.42 1.58 16 12 C -0.15 -2.67 9.00 37.16 0.33 -2.34 16 13 C 0.04 0.88 4.44 -27.89 -0.12 0.76 16 14 C -0.52 -14.18 8.53 -34.44 -0.29 -14.47 16 15 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 N -0.59 -8.55 6.28 -10.57 -0.07 -8.62 16 23 H 0.42 4.80 8.96 -40.82 -0.37 4.43 16 24 C 0.09 1.27 7.29 -83.85 -0.61 0.66 16 25 C -0.15 -1.92 9.99 -39.37 -0.39 -2.31 16 26 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 27 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.13 1.06 6.26 -52.49 -0.33 0.73 16 30 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.07 1.22 5.85 -51.93 -0.30 0.92 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -31.07 325.55 -9.30 -40.37 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.71 Total: 1.23 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -2.58 Total: -14.26 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.58 Total: -42.86 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.21 Total: -3.57 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.26 Total: -2.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.07 -9.30 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188187533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.177 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds