Wall clock time and date at job start Tue Mar 31 2020 06:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35987 * 117.00134 * 2 1 4 4 C 1.39123 * 119.84103 * 359.97438 * 3 2 1 5 5 C 1.37662 * 120.44343 * 179.97438 * 4 3 2 6 6 C 1.39702 * 119.85316 * 0.05262 * 5 4 3 7 7 N 1.36024 * 133.30287 * 179.97438 * 6 5 4 8 8 C 1.30985 * 109.60925 * 179.69396 * 7 6 5 9 9 S 1.76208 * 125.07963 * 180.27069 * 8 7 6 10 10 C 1.81004 * 99.99853 * 0.20781 * 9 8 7 11 11 H 1.08995 * 109.47003 * 54.99692 * 10 9 8 12 12 C 1.53005 * 109.46549 * 295.00053 * 10 9 8 13 13 C 1.52993 * 109.47144 * 175.00409 * 10 9 8 14 14 C 1.50701 * 109.46831 * 294.99659 * 13 10 9 15 15 H 1.08002 * 120.00104 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00383 * 180.02562 * 14 13 10 17 17 N 1.31521 * 119.99557 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00462 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47173 * 59.99896 * 18 16 14 20 20 H 1.48506 * 109.47405 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47123 * 299.99988 * 18 16 14 22 22 N 1.36704 * 109.84603 * 0.44968 * 8 7 6 23 23 H 0.97001 * 126.38226 * 179.82350 * 22 8 7 24 24 C 1.38533 * 107.24439 * 359.55376 * 22 8 7 25 25 C 1.38382 * 119.84591 * 180.02562 * 3 2 1 26 26 H 1.08991 * 109.47319 * 60.00195 * 1 2 3 27 27 H 1.09007 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47091 * 299.99925 * 1 2 3 29 29 H 1.08001 * 119.77847 * 0.02946 * 4 3 2 30 30 H 1.08001 * 120.07761 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.47479 * 60.00231 * 12 10 9 32 32 H 1.08998 * 109.46749 * 180.02562 * 12 10 9 33 33 H 1.08995 * 109.47173 * 299.99535 * 12 10 9 34 34 H 1.09002 * 109.47515 * 54.99474 * 13 10 9 35 35 H 1.08996 * 109.47573 * 175.00156 * 13 10 9 36 36 H 0.96999 * 120.00030 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.08925 * 359.96008 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2855 2.3763 -0.0005 5 6 1.8976 3.6094 0.0000 6 6 3.2920 3.6936 0.0000 7 7 4.1636 4.7379 -0.0001 8 6 5.3926 4.2848 0.0065 9 16 6.8416 5.2874 0.0158 10 6 6.0857 6.9321 0.0196 11 1 5.3953 7.0126 0.8592 12 6 5.3235 7.1460 -1.2898 13 6 7.1779 7.9950 0.1535 14 6 7.8473 7.8609 1.4969 15 1 7.5262 7.0939 2.1861 16 6 8.8699 8.7172 1.8463 17 7 9.2613 9.6510 1.0068 18 14 9.6992 8.5515 3.5118 19 1 10.3058 7.2012 3.6305 20 1 10.7586 9.5839 3.6423 21 1 8.6920 8.7378 4.5870 22 7 5.3832 2.9178 0.0010 23 1 6.1602 2.3371 0.0016 24 6 4.0574 2.5161 0.0008 25 6 3.4285 1.2803 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2073 2.3127 -0.0005 30 1 1.3011 4.5098 0.0000 31 1 4.5454 6.3887 -1.3852 32 1 4.8687 8.1365 -1.2877 33 1 6.0139 7.0654 -2.1293 34 1 7.9169 7.8581 -0.6360 35 1 6.7329 8.9862 0.0667 36 1 9.9804 10.2537 1.2527 37 1 4.0157 0.3738 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188187533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:38 Heat of formation + Delta-G solvation = 3.894928 kcal Electronic energy + Delta-G solvation = -20014.868645 eV Core-core repulsion = 16883.375447 eV Total energy + Delta-G solvation = -3131.493198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.94588 -40.40698 -36.91624 -36.47732 -34.35149 -33.82971 -31.23249 -30.08801 -29.25027 -27.82783 -25.25532 -24.63628 -23.23452 -22.53082 -22.19183 -19.62855 -18.95447 -18.49080 -17.84039 -17.01899 -16.73555 -16.65407 -16.54818 -16.17501 -15.91904 -14.95272 -14.76672 -14.54666 -14.26712 -13.90324 -13.66024 -13.30644 -13.16943 -13.12014 -12.99560 -12.60707 -12.44697 -12.38272 -12.06399 -11.97786 -11.64278 -11.37891 -11.31723 -11.12427 -10.94886 -10.53474 -9.75637 -9.22164 -8.26011 -8.18981 -6.28148 -0.13203 0.20438 0.43093 1.26747 1.42450 1.44295 1.52007 1.58271 1.92582 2.42606 2.58117 2.77251 3.15977 3.43002 3.87043 4.02105 4.12817 4.14625 4.25956 4.35938 4.46921 4.48215 4.48877 4.58014 4.79259 4.92641 4.94378 5.04881 5.10595 5.22025 5.29408 5.39251 5.41818 5.51675 5.62762 5.78380 6.17829 6.19743 6.39188 6.69564 6.83756 7.40055 8.92241 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032913 B = 0.003190 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.518258 B = 8775.660847 C = 9062.206706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.141 3.859 4 C -0.193 4.193 5 C -0.036 4.036 6 C -0.008 4.008 7 N -0.509 5.509 8 C 0.253 3.747 9 S 0.002 5.998 10 C -0.043 4.043 11 H 0.079 0.921 12 C -0.137 4.137 13 C 0.044 3.956 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.956 3.044 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.270 1.270 22 N -0.579 5.579 23 H 0.437 0.563 24 C 0.082 3.918 25 C -0.162 4.162 26 H 0.068 0.932 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.168 0.832 30 H 0.145 0.855 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.020 0.980 36 H 0.264 0.736 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.605 -19.028 -3.262 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.094 3.906 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.127 4.127 7 N -0.234 5.234 8 C -0.122 4.122 9 S 0.234 5.766 10 C -0.173 4.173 11 H 0.097 0.903 12 C -0.196 4.196 13 C 0.005 3.995 14 C -0.573 4.573 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.195 1.195 22 N -0.195 5.195 23 H 0.279 0.721 24 C -0.031 4.031 25 C -0.184 4.184 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.186 0.814 30 H 0.163 0.837 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.516 -18.496 -3.283 24.364 hybrid contribution -0.013 -0.167 0.776 0.794 sum -15.529 -18.663 -2.507 24.407 Atomic orbital electron populations 1.23412 0.76010 1.05760 1.02630 1.86053 1.23722 1.25867 1.88597 1.18499 0.91029 0.85013 0.96106 1.21299 1.01588 0.90300 1.08138 1.20328 0.89817 0.98908 0.96542 1.19557 0.95299 0.88595 1.09291 1.70973 0.97844 1.30291 1.24333 1.25807 0.99230 0.84846 1.02311 1.85957 0.99174 1.00140 1.91357 1.23298 1.00113 0.91965 1.01876 0.90260 1.22035 1.00101 1.02783 0.94693 1.18896 0.91849 0.92232 0.96506 1.21550 1.17775 1.16033 1.01978 0.91881 1.25823 0.97611 0.94830 1.00795 1.70063 1.29577 1.19659 1.37568 0.85627 0.78202 0.78112 0.79941 1.19205 1.20897 1.19483 1.42853 1.07184 1.05717 1.63738 0.72115 1.18634 0.83997 0.95896 1.04549 1.18945 0.92360 0.94709 1.12415 0.91314 0.86219 0.91427 0.81433 0.83703 0.90876 0.91524 0.92332 0.97448 0.96231 0.92716 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.81 10.49 -93.41 -0.98 -6.79 16 3 C 0.14 2.96 6.68 22.52 0.15 3.11 16 4 C -0.19 -3.65 9.01 22.35 0.20 -3.45 16 5 C -0.04 -0.87 10.09 22.49 0.23 -0.65 16 6 C -0.01 -0.26 7.22 39.38 0.28 0.03 16 7 N -0.51 -18.54 8.63 -188.32 -1.63 -20.17 16 8 C 0.25 8.82 7.92 179.58 1.42 10.25 16 9 S 0.00 0.06 21.07 -56.49 -1.19 -1.13 16 10 C -0.04 -1.82 2.25 30.59 0.07 -1.76 16 11 H 0.08 3.53 8.14 -2.40 -0.02 3.51 16 12 C -0.14 -5.03 9.00 71.98 0.65 -4.38 16 13 C 0.04 2.24 4.44 29.85 0.13 2.37 16 14 C -0.54 -29.54 8.53 25.60 0.22 -29.32 16 15 H 0.06 3.41 7.60 -2.91 -0.02 3.39 16 16 C 0.01 0.44 5.46 84.65 0.46 0.90 16 17 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 18 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 N -0.58 -16.51 6.28 -187.35 -1.18 -17.69 16 23 H 0.44 9.63 8.96 -92.71 -0.83 8.79 16 24 C 0.08 2.33 7.29 38.72 0.28 2.61 16 25 C -0.16 -3.81 9.99 22.41 0.22 -3.59 16 26 H 0.07 0.44 7.65 -2.39 -0.02 0.43 16 27 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.07 0.45 7.65 -2.39 -0.02 0.44 16 29 H 0.17 1.92 6.26 -2.91 -0.02 1.90 16 30 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.07 2.62 5.85 -2.39 -0.01 2.61 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -67.57 325.55 3.04 -64.54 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.26 Total: 12.72 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 5.43 Total: -22.62 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -2.52 Total: -92.72 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.98 Total: -6.79 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -1.19 Total: -1.13 kcal Total: -67.57 3.04 -64.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188187533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.431 kcal (2) G-P(sol) polarization free energy of solvation -67.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds