Wall clock time and date at job start Tue Mar 31 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36026 * 120.33403 * 2 1 4 4 C 1.40466 * 119.69587 * 179.97438 * 3 2 1 5 5 C 1.34952 * 120.29839 * 0.02562 * 4 3 2 6 6 N 1.36491 * 120.61000 * 359.95570 * 5 4 3 7 7 C 1.36837 * 132.56615 * 180.33143 * 6 5 4 8 8 C 1.35099 * 107.17612 * 180.09788 * 7 6 5 9 9 C 1.50701 * 125.68946 * 179.89772 * 8 7 6 10 10 S 1.81393 * 109.47513 * 269.72213 * 9 8 7 11 11 O 1.42103 * 109.47298 * 63.60565 * 10 9 8 12 12 C 1.81399 * 103.00232 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47004 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47574 * 89.99780 * 18 16 14 20 20 H 1.48500 * 109.47346 * 209.99892 * 18 16 14 21 21 H 1.48499 * 109.47067 * 329.99541 * 18 16 14 22 22 N 1.33521 * 108.62936 * 359.63788 * 8 7 6 23 23 C 1.32561 * 109.15393 * 0.22805 * 22 8 7 24 24 H 1.08996 * 109.47492 * 270.02207 * 1 2 3 25 25 H 1.08994 * 109.47136 * 30.02337 * 1 2 3 26 26 H 1.09003 * 109.46735 * 150.02030 * 1 2 3 27 27 H 1.08002 * 120.15136 * 359.95381 * 3 2 1 28 28 H 1.07998 * 119.85639 * 180.02562 * 4 3 2 29 29 H 1.07997 * 119.69892 * 180.02562 * 5 4 3 30 30 H 1.07995 * 126.41403 * 359.97438 * 7 6 5 31 31 H 1.09001 * 109.47518 * 149.71564 * 9 8 7 32 32 H 1.09010 * 109.46708 * 29.72113 * 9 8 7 33 33 H 1.09000 * 109.47234 * 59.99874 * 12 10 9 34 34 H 1.09001 * 109.47232 * 299.99385 * 12 10 9 35 35 H 1.08993 * 109.46955 * 300.00150 * 13 12 10 36 36 H 1.09000 * 109.47050 * 59.99979 * 13 12 10 37 37 H 0.96992 * 120.00032 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1740 0.0000 4 6 3.5986 1.1584 0.0005 5 6 4.2664 -0.0143 0.0005 6 7 3.5895 -1.1996 0.0009 7 6 4.0056 -2.5031 0.0069 8 6 2.8974 -3.2757 0.0017 9 6 2.8761 -4.7826 0.0032 10 16 2.8684 -5.3889 -1.7064 11 8 4.0744 -5.0030 -2.3513 12 6 2.8436 -7.1910 -1.5001 13 6 2.8343 -7.8616 -2.8754 14 6 2.8144 -9.3587 -2.7040 15 1 2.8093 -9.7888 -1.7133 16 6 2.8036 -10.1794 -3.8118 17 7 2.8103 -9.6556 -5.0182 18 14 2.7782 -12.0350 -3.5995 19 1 1.3715 -12.5078 -3.5437 20 1 3.4701 -12.6742 -4.7475 21 1 3.4729 -12.3985 -2.3383 22 7 1.8239 -2.4817 0.0009 23 6 2.2189 -1.2163 0.0004 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6619 2.1139 -0.0008 28 1 4.1466 2.0890 0.0010 29 1 5.3464 -0.0150 0.0014 30 1 5.0285 -2.8495 0.0124 31 1 1.9809 -5.1329 0.5170 32 1 3.7607 -5.1579 0.5179 33 1 1.9494 -7.4813 -0.9486 34 1 3.7292 -7.5057 -0.9481 35 1 1.9486 -7.5468 -3.4270 36 1 3.7283 -7.5713 -3.4272 37 1 2.8024 -10.2329 -5.7976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190817017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:13 Heat of formation + Delta-G solvation = 14.071908 kcal Electronic energy + Delta-G solvation = -19792.607161 eV Core-core repulsion = 16661.555269 eV Total energy + Delta-G solvation = -3131.051891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.82952 -38.61596 -36.75463 -35.72774 -35.50166 -32.93522 -32.86830 -31.16304 -28.54616 -27.82941 -27.26337 -23.80355 -23.47265 -22.85613 -21.60341 -18.79707 -18.55332 -18.30018 -17.85720 -17.11710 -16.64887 -16.45768 -16.04106 -15.83918 -15.41291 -15.17648 -15.08803 -14.43803 -14.24542 -14.09023 -14.02149 -13.53583 -13.39763 -13.05256 -12.87774 -12.67853 -12.65532 -12.59378 -12.50195 -11.99486 -11.90752 -11.53710 -11.51763 -11.19207 -10.94483 -10.59253 -9.72371 -9.04076 -8.75622 -8.21122 -6.34705 -0.22083 0.23332 0.57121 1.39779 1.42123 1.52722 1.60743 1.76625 1.95087 2.40380 2.53134 2.82778 3.10758 3.17002 3.41572 3.76072 3.91326 4.03768 4.14477 4.20329 4.30194 4.39713 4.49180 4.59616 4.77393 4.80506 4.87251 4.91988 5.02567 5.09759 5.25563 5.37512 5.42436 5.51086 5.53046 5.66686 5.76996 6.09236 6.17343 6.78284 6.80246 7.34651 8.90113 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040239 B = 0.002800 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.674706 B = 9996.345168 C =10197.091651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.072 4.072 3 C -0.095 4.095 4 C -0.125 4.125 5 C 0.022 3.978 6 N -0.365 5.365 7 C -0.111 4.111 8 C 0.064 3.936 9 C -0.357 4.357 10 S 1.270 4.730 11 O -0.911 6.911 12 C -0.416 4.416 13 C 0.036 3.964 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.265 1.265 22 N -0.508 5.508 23 C 0.207 3.793 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.181 0.819 28 H 0.192 0.808 29 H 0.184 0.816 30 H 0.185 0.815 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.021 0.979 36 H -0.024 1.024 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 25.251 14.096 29.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.145 4.145 5 C -0.099 4.099 6 N -0.036 5.036 7 C -0.245 4.245 8 C -0.069 4.069 9 C -0.494 4.494 10 S 1.472 4.528 11 O -0.906 6.906 12 C -0.554 4.554 13 C -0.002 4.002 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.202 4.202 17 N -0.574 5.574 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.190 1.190 22 N -0.230 5.230 23 C -0.037 4.037 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.198 0.802 28 H 0.210 0.790 29 H 0.201 0.799 30 H 0.202 0.798 31 H 0.179 0.821 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.084 0.916 35 H 0.040 0.960 36 H -0.006 1.006 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.507 25.421 13.076 28.940 hybrid contribution 3.162 -1.872 0.772 3.755 sum -1.345 23.548 13.849 27.352 Atomic orbital electron populations 1.20692 0.87515 1.04098 1.03492 1.19474 0.98241 0.87907 1.01844 1.21483 0.94131 0.98382 0.97850 1.21370 0.94971 0.97755 1.00429 1.22329 1.00274 0.82812 1.04471 1.42894 1.08915 1.06431 1.45384 1.22607 1.01536 0.81539 1.18774 1.19954 0.88866 0.94594 1.03460 1.25962 1.10079 0.93412 1.19980 1.70196 1.09940 0.86610 0.86009 1.92952 1.52667 1.78866 1.66142 1.27524 1.07349 1.16486 1.04087 1.18643 0.95501 0.95443 0.90616 1.21654 1.50900 0.92215 0.93220 0.91541 1.26079 0.94609 1.04667 0.94833 1.70112 1.51355 1.37374 0.98595 0.85364 0.78900 0.78464 0.77814 1.18872 1.20997 1.18957 1.70513 1.29383 0.98615 1.24472 1.21400 0.80956 0.94977 1.06359 0.89959 0.88259 0.91990 0.80195 0.79049 0.79876 0.79755 0.82150 0.87742 0.84141 0.91562 0.96027 1.00578 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.03 71.24 0.71 -0.72 16 2 C -0.07 -1.35 5.90 -19.72 -0.12 -1.47 16 3 C -0.09 -1.09 9.72 22.30 0.22 -0.87 16 4 C -0.13 -1.29 9.99 22.06 0.22 -1.07 16 5 C 0.02 0.36 10.95 83.21 0.91 1.28 16 6 N -0.37 -9.35 2.95 -352.17 -1.04 -10.39 16 7 C -0.11 -3.29 11.66 83.19 0.97 -2.32 16 8 C 0.06 2.00 6.32 41.58 0.26 2.27 16 9 C -0.36 -10.04 6.45 71.24 0.46 -9.58 16 10 S 1.27 45.33 13.14 -56.49 -0.74 44.59 16 11 O -0.91 -44.19 18.14 -148.98 -2.70 -46.89 16 12 C -0.42 -16.90 5.86 71.98 0.42 -16.48 16 13 C 0.04 1.98 4.98 29.85 0.15 2.13 16 14 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 15 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 17 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 18 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 N -0.51 -15.82 11.31 -182.41 -2.06 -17.88 16 23 C 0.21 5.62 7.52 134.11 1.01 6.63 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 26 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 27 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 28 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 29 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.19 4.93 8.06 -2.91 -0.02 4.91 16 31 H 0.16 3.56 8.14 -2.39 -0.02 3.54 16 32 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 34 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 36 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -87.56 335.07 2.74 -84.82 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.06 Total: 8.15 kcal Atomic # 6 Polarization: -57.09 SS G_CDS: 5.91 Total: -51.18 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.82 Total: -86.41 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -2.70 Total: -46.89 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 45.33 SS G_CDS: -0.74 Total: 44.59 kcal Total: -87.56 2.74 -84.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190817017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.891 kcal (2) G-P(sol) polarization free energy of solvation -87.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds