Wall clock time and date at job start Tue Mar 31 2020 06:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36018 * 120.33727 * 2 1 4 4 C 1.40473 * 119.69764 * 179.79907 * 3 2 1 5 5 C 1.34955 * 120.29209 * 0.48338 * 4 3 2 6 6 N 1.36484 * 120.61549 * 359.75266 * 5 4 3 7 7 C 1.36836 * 132.56996 * 180.02562 * 6 5 4 8 8 C 1.35105 * 107.17567 * 179.97438 * 7 6 5 9 9 C 1.50701 * 125.68200 * 179.97438 * 8 7 6 10 10 S 1.81398 * 109.47068 * 269.97438 * 9 8 7 11 11 O 1.42093 * 109.47540 * 296.39064 * 10 9 8 12 12 C 1.81405 * 103.00136 * 179.97438 * 10 9 8 13 13 C 1.52998 * 109.47224 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.46979 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00054 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99917 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00173 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47085 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47102 * 119.99776 * 18 16 14 21 21 H 1.48495 * 109.47317 * 239.99812 * 18 16 14 22 22 N 1.33514 * 108.62916 * 0.02562 * 8 7 6 23 23 C 1.32559 * 109.15909 * 359.97438 * 22 8 7 24 24 H 1.09002 * 109.47152 * 269.71909 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72009 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.71990 * 1 2 3 27 27 H 1.08004 * 120.15539 * 0.02562 * 3 2 1 28 28 H 1.07995 * 119.85646 * 180.26251 * 4 3 2 29 29 H 1.08004 * 119.68857 * 179.76882 * 5 4 3 30 30 H 1.07998 * 126.40581 * 359.97438 * 7 6 5 31 31 H 1.09001 * 109.47136 * 29.97586 * 9 8 7 32 32 H 1.09000 * 109.46876 * 149.97775 * 9 8 7 33 33 H 1.08997 * 109.47389 * 300.00322 * 12 10 9 34 34 H 1.08998 * 109.46339 * 60.00258 * 12 10 9 35 35 H 1.08997 * 109.47275 * 300.00483 * 13 12 10 36 36 H 1.09004 * 109.46787 * 60.00641 * 13 12 10 37 37 H 0.97001 * 120.00226 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1739 0.0000 4 6 3.5987 1.1582 0.0043 5 6 4.2664 -0.0145 -0.0015 6 7 3.5895 -1.1997 -0.0064 7 6 4.0055 -2.5033 -0.0121 8 6 2.8971 -3.2758 -0.0146 9 6 2.8759 -4.7826 -0.0214 10 16 2.8650 -5.3795 -1.7344 11 8 1.6699 -4.9562 -2.3759 12 6 2.8407 -7.1827 -1.5381 13 6 2.8288 -7.8457 -2.9170 14 6 2.8080 -9.3437 -2.7539 15 1 2.8032 -9.7792 -1.7656 16 6 2.7950 -10.1581 -3.8663 17 7 2.8003 -9.6277 -5.0697 18 14 2.7699 -12.0150 -3.6642 19 1 2.7682 -12.3556 -2.2188 20 1 1.5487 -12.5661 -4.3045 21 1 3.9733 -12.5994 -4.3086 22 7 1.8238 -2.4817 -0.0111 23 6 2.2188 -1.2164 -0.0059 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8925 -0.5095 27 1 1.6621 2.1139 0.0004 28 1 4.1467 2.0888 0.0086 29 1 5.3464 -0.0152 -0.0019 30 1 5.0285 -2.8497 -0.0142 31 1 3.7614 -5.1608 0.4895 32 1 1.9815 -5.1357 0.4920 33 1 3.7272 -7.5005 -0.9894 34 1 1.9474 -7.4760 -0.9867 35 1 1.9421 -7.5278 -3.4653 36 1 3.7219 -7.5523 -3.4688 37 1 2.7915 -10.2007 -5.8524 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190817034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:15 Heat of formation + Delta-G solvation = 40.007443 kcal Electronic energy + Delta-G solvation = -19804.662200 eV Core-core repulsion = 16674.734957 eV Total energy + Delta-G solvation = -3129.927242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.90856 -37.81748 -35.01464 -34.69511 -33.62804 -31.98397 -30.83518 -30.27165 -27.59434 -27.03219 -25.23685 -22.95043 -22.34223 -21.33812 -20.43847 -17.72569 -17.06901 -16.94750 -16.49433 -16.03359 -15.78999 -14.59290 -14.54408 -14.44800 -14.38304 -14.06135 -13.85296 -13.44416 -13.03477 -12.87970 -12.65800 -12.28625 -12.02047 -11.92727 -11.86277 -11.53988 -11.20147 -10.95627 -10.76763 -10.68805 -10.10342 -10.08784 -10.03902 -9.51180 -9.21273 -8.53190 -8.38807 -7.92064 -7.57512 -6.01489 -4.05424 0.53756 1.11141 1.94047 2.46133 2.88891 3.26751 3.30633 3.38177 3.40958 3.42028 4.02490 4.17602 4.39145 4.46305 4.48071 4.58516 4.76177 5.07737 5.12755 5.18909 5.33499 5.34162 5.46774 5.61708 5.64327 5.73518 5.83042 5.90736 6.02559 6.09737 6.20845 6.34159 6.56205 6.86773 6.95066 7.53895 7.66162 7.84902 7.94132 8.35768 8.99692 9.58530 11.09187 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.041232 B = 0.002805 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.915493 B = 9980.993658 C =10185.174533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.040 4.040 3 C -0.117 4.117 4 C -0.141 4.141 5 C 0.049 3.951 6 N -0.361 5.361 7 C -0.095 4.095 8 C 0.092 3.908 9 C -0.381 4.381 10 S 1.228 4.772 11 O -0.837 6.837 12 C -0.419 4.419 13 C 0.038 3.962 14 C -0.517 4.517 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 N -0.478 5.478 23 C 0.223 3.777 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.163 0.837 30 H 0.191 0.809 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.023 0.977 36 H 0.028 0.972 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.769 23.113 12.321 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.042 4.042 3 C -0.141 4.141 4 C -0.162 4.162 5 C -0.073 4.073 6 N -0.033 5.033 7 C -0.228 4.228 8 C -0.042 4.042 9 C -0.515 4.515 10 S 1.427 4.573 11 O -0.832 6.832 12 C -0.559 4.559 13 C -0.001 4.001 14 C -0.557 4.557 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 N -0.198 5.198 23 C -0.021 4.021 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.158 0.842 28 H 0.167 0.833 29 H 0.180 0.820 30 H 0.208 0.792 31 H 0.146 0.854 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.995 23.304 11.331 26.597 hybrid contribution -0.861 -1.565 1.224 2.166 sum 5.134 21.739 12.555 25.623 Atomic orbital electron populations 1.20688 0.89027 1.03767 1.02915 1.19048 0.96995 0.88417 0.99758 1.20888 0.93767 0.97709 1.01714 1.20745 0.94736 0.97109 1.03638 1.21585 0.98628 0.83267 1.03804 1.42784 1.08711 1.06064 1.45696 1.22439 1.01199 0.80310 1.18803 1.19907 0.88238 0.94412 1.01618 1.26307 1.08063 0.93417 1.23726 1.70497 1.13156 0.89131 0.84473 1.93124 1.50960 1.76932 1.62165 1.27649 1.06038 1.14696 1.07507 1.18787 0.98101 0.95523 0.87644 1.21203 1.50956 0.90833 0.92661 0.92412 1.25052 0.95246 0.98969 0.95283 1.69973 1.50467 1.35198 0.97554 0.86491 0.77644 0.85420 0.78188 1.19745 1.20999 1.20858 1.70665 1.29618 0.97809 1.21744 1.20777 0.80294 0.94285 1.06741 0.90632 0.90108 0.90920 0.84243 0.83326 0.81957 0.79213 0.85371 0.88275 0.87621 0.90847 0.95892 0.95364 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.03 36.01 0.36 -0.71 16 2 C -0.04 -0.46 5.90 -104.40 -0.62 -1.07 16 3 C -0.12 -0.96 9.72 -39.54 -0.38 -1.35 16 4 C -0.14 -0.97 9.99 -39.91 -0.40 -1.36 16 5 C 0.05 0.40 10.95 -16.65 -0.18 0.21 16 6 N -0.36 -4.34 2.94 -62.66 -0.18 -4.53 16 7 C -0.10 -1.13 11.66 -16.43 -0.19 -1.32 16 8 C 0.09 1.40 6.32 -82.97 -0.52 0.88 16 9 C -0.38 -5.39 6.46 36.01 0.23 -5.16 16 10 S 1.23 21.06 13.14 -107.50 -1.41 19.65 16 11 O -0.84 -20.33 18.14 -35.23 -0.64 -20.97 16 12 C -0.42 -8.37 5.86 37.16 0.22 -8.15 16 13 C 0.04 0.99 4.98 -27.88 -0.14 0.85 16 14 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 N -0.48 -8.46 11.31 -9.00 -0.10 -8.57 16 23 C 0.22 3.28 7.52 -156.04 -1.17 2.10 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 28 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 29 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 30 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.13 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.10 1.56 8.14 -51.92 -0.42 1.14 16 33 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.07 1.54 8.14 -51.92 -0.42 1.12 16 35 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -40.86 335.07 -9.81 -50.68 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.03 Total: -3.06 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: -3.21 Total: -28.61 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.45 Total: -39.47 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.64 Total: -20.97 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 21.06 SS G_CDS: -1.41 Total: 19.65 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -40.86 -9.81 -50.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190817034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.684 kcal (2) G-P(sol) polarization free energy of solvation -40.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds