Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48500 * 109.46685 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 299.99586 * 3 2 1 6 6 H 1.48502 * 109.47120 * 59.99923 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.33689 * 125.86565 * 89.71467 * 14 13 12 16 16 N 1.31326 * 115.87648 * 179.84282 * 15 14 13 17 17 C 1.30484 * 116.96874 * 0.45988 * 16 15 14 18 18 C 1.47103 * 125.48535 * 179.78879 * 17 16 15 19 19 C 1.36261 * 125.96091 * 359.96046 * 18 17 16 20 20 C 1.40783 * 106.72487 * 179.97438 * 19 18 17 21 21 C 1.34827 * 107.07418 * 359.97438 * 20 19 18 22 22 O 1.34278 * 108.72016 * 359.77383 * 21 20 19 23 23 S 1.76173 * 109.03342 * 359.75494 * 17 16 15 24 24 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 26 26 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 27 27 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 28 28 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 29 29 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 30 30 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 31 31 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 32 32 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 33 33 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 34 34 H 1.08001 * 122.05990 * 0.02562 * 15 14 13 35 35 H 1.08000 * 126.63999 * 359.95852 * 19 18 17 36 36 H 1.08000 * 126.46435 * 180.02562 * 20 19 18 37 37 H 1.07999 * 125.63473 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7349 -7.3950 0.0005 14 6 2.7444 -8.5138 0.0005 15 6 3.2731 -9.0917 1.0839 16 7 4.1363 -10.0549 0.8561 17 6 4.3918 -10.3376 -0.3918 18 6 5.3263 -11.3733 -0.8587 19 6 6.0695 -12.1963 -0.0668 20 6 6.8147 -13.0234 -0.9285 21 6 6.4948 -12.6711 -2.1900 22 8 5.5920 -11.6782 -2.1444 23 16 3.4367 -9.2800 -1.4277 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8535 -5.0450 -0.8886 30 1 0.8542 -5.0446 0.8914 31 1 3.0694 -6.0365 -0.7813 32 1 1.1103 -7.4695 0.8907 33 1 1.1097 -7.4692 -0.8892 34 1 3.0046 -8.7873 2.0848 35 1 6.0842 -12.2110 1.0130 36 1 7.5106 -13.7951 -0.6345 37 1 6.8952 -13.1168 -3.0885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193084303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = 50.418735 kcal Electronic energy + Delta-G solvation = -18941.243413 eV Core-core repulsion = 15811.767639 eV Total energy + Delta-G solvation = -3129.475775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.93974 -39.73011 -36.67606 -33.88017 -33.46279 -32.29709 -31.10415 -29.34771 -26.76241 -25.51771 -23.79704 -22.33772 -22.13160 -21.86256 -20.26651 -19.71629 -18.26053 -17.51296 -16.57258 -16.37286 -16.01798 -15.25808 -14.94909 -14.71322 -14.44394 -14.10927 -13.89546 -13.43895 -13.37388 -13.28940 -13.00693 -12.40516 -12.14525 -11.69478 -11.56770 -11.30717 -10.86730 -10.61632 -10.53181 -10.45070 -10.02100 -9.98612 -9.72469 -9.52878 -9.35103 -9.06032 -8.39086 -8.34869 -8.25978 -6.00029 -4.02022 -0.03949 0.92663 1.40596 1.44047 2.16676 2.20218 2.78739 3.31423 3.38820 3.43522 3.98200 4.33549 4.48336 4.56694 4.58163 4.67770 4.71768 4.96005 5.33849 5.35935 5.45029 5.45632 5.53388 5.59315 5.72114 5.83724 5.89034 6.02808 6.25521 6.56627 6.65422 6.68694 7.09847 7.18438 7.38022 7.45115 7.67821 7.81740 8.00171 8.43393 9.05318 9.62100 11.11399 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.035795 B = 0.002156 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.046726 B =12986.232273 C =13266.797074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.685 5.685 13 C 0.132 3.868 14 C -0.195 4.195 15 C 0.054 3.946 16 N -0.448 5.448 17 C 0.128 3.872 18 C 0.038 3.962 19 C -0.138 4.138 20 C -0.216 4.216 21 C -0.017 4.017 22 O -0.169 6.169 23 S 0.113 5.887 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.017 0.983 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.339 0.661 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.589 -27.894 -3.394 29.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.317 5.317 13 C 0.000 4.000 14 C -0.316 4.316 15 C -0.098 4.098 16 N -0.163 5.163 17 C -0.146 4.146 18 C -0.015 4.015 19 C -0.162 4.162 20 C -0.235 4.235 21 C -0.087 4.087 22 O -0.064 6.064 23 S 0.370 5.630 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.200 0.800 35 H 0.177 0.823 36 H 0.174 0.826 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 9.466 -27.721 -3.655 29.520 hybrid contribution 0.002 1.055 -0.026 1.056 sum 9.468 -26.665 -3.681 28.535 Atomic orbital electron populations 1.69973 1.06052 1.26471 1.51095 1.25039 0.94865 0.99307 0.95386 0.86535 0.80153 0.83767 0.77552 1.19717 1.21056 1.20998 1.21290 0.93112 0.91016 1.50239 0.92598 1.19073 0.93996 0.91355 0.97172 1.21632 0.99237 0.92767 1.00884 1.22188 0.94023 0.90487 1.00257 1.60663 1.20397 1.00491 1.50123 1.20342 0.91716 0.85618 1.02279 1.26039 1.06426 1.04639 0.94507 1.21551 0.94609 0.93011 1.00630 1.66506 1.15938 1.16319 1.17518 1.23795 1.00635 0.99117 0.91008 1.18620 1.01693 0.99470 0.81701 1.21931 0.97240 0.95812 1.01249 1.21867 1.05003 1.04183 0.92460 1.24293 0.93152 0.90819 1.00395 1.84068 1.49885 1.45338 1.27134 1.85145 1.37139 1.30078 1.10646 0.93084 0.96775 0.96492 0.92409 0.93596 0.95452 0.91049 0.84311 0.88458 0.93835 0.79982 0.82255 0.82584 0.77233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.20 5.41 -26.73 -0.14 -2.34 16 11 C 0.06 0.97 5.69 -3.82 -0.02 0.95 16 12 N -0.69 -9.71 6.49 -115.05 -0.75 -10.46 16 13 C 0.13 1.53 6.21 -4.97 -0.03 1.50 16 14 C -0.19 -2.24 6.10 -35.90 -0.22 -2.46 16 15 C 0.05 0.64 11.14 -19.36 -0.22 0.42 16 16 N -0.45 -5.65 10.52 -11.54 -0.12 -5.77 16 17 C 0.13 1.54 7.46 -14.53 -0.11 1.43 16 18 C 0.04 0.42 7.22 -36.70 -0.26 0.15 16 19 C -0.14 -1.29 10.80 -39.33 -0.42 -1.71 16 20 C -0.22 -1.49 10.88 -39.83 -0.43 -1.92 16 21 C -0.02 -0.11 12.08 29.52 0.36 0.25 16 22 O -0.17 -1.66 10.68 4.46 0.05 -1.61 16 23 S 0.11 1.26 23.42 -107.50 -2.52 -1.26 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.34 4.71 8.72 -39.29 -0.34 4.36 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.21 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -32.11 339.92 -9.51 -41.62 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.96 Total: -1.18 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.06 Total: -16.95 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.13 Total: -42.57 kcal Atomic # 8 Polarization: -1.66 SS G_CDS: 0.05 Total: -1.61 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.52 Total: -1.26 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.11 -9.51 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193084303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.043 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds