Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48500 * 109.46685 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 299.99586 * 3 2 1 6 6 H 1.48502 * 109.47120 * 59.99923 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.33689 * 125.86565 * 89.71467 * 14 13 12 16 16 N 1.31326 * 115.87648 * 179.84282 * 15 14 13 17 17 C 1.30484 * 116.96874 * 0.45988 * 16 15 14 18 18 C 1.47103 * 125.48535 * 179.78879 * 17 16 15 19 19 C 1.36261 * 125.96091 * 359.96046 * 18 17 16 20 20 C 1.40783 * 106.72487 * 179.97438 * 19 18 17 21 21 C 1.34827 * 107.07418 * 359.97438 * 20 19 18 22 22 O 1.34278 * 108.72016 * 359.77383 * 21 20 19 23 23 S 1.76173 * 109.03342 * 359.75494 * 17 16 15 24 24 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 26 26 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 27 27 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 28 28 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 29 29 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 30 30 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 31 31 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 32 32 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 33 33 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 34 34 H 1.08001 * 122.05990 * 0.02562 * 15 14 13 35 35 H 1.08000 * 126.63999 * 359.95852 * 19 18 17 36 36 H 1.08000 * 126.46435 * 180.02562 * 20 19 18 37 37 H 1.07999 * 125.63473 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7349 -7.3950 0.0005 14 6 2.7444 -8.5138 0.0005 15 6 3.2731 -9.0917 1.0839 16 7 4.1363 -10.0549 0.8561 17 6 4.3918 -10.3376 -0.3918 18 6 5.3263 -11.3733 -0.8587 19 6 6.0695 -12.1963 -0.0668 20 6 6.8147 -13.0234 -0.9285 21 6 6.4948 -12.6711 -2.1900 22 8 5.5920 -11.6782 -2.1444 23 16 3.4367 -9.2800 -1.4277 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8535 -5.0450 -0.8886 30 1 0.8542 -5.0446 0.8914 31 1 3.0694 -6.0365 -0.7813 32 1 1.1103 -7.4695 0.8907 33 1 1.1097 -7.4692 -0.8892 34 1 3.0046 -8.7873 2.0848 35 1 6.0842 -12.2110 1.0130 36 1 7.5106 -13.7951 -0.6345 37 1 6.8952 -13.1168 -3.0885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193084303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = 29.782238 kcal Electronic energy + Delta-G solvation = -18942.138279 eV Core-core repulsion = 15811.767639 eV Total energy + Delta-G solvation = -3130.370640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.57013 -40.60331 -37.93324 -35.65673 -34.21391 -33.71600 -32.31368 -30.44928 -28.18170 -26.70431 -25.02222 -23.75690 -22.95188 -22.48954 -21.96287 -20.51304 -19.12095 -18.49258 -18.23793 -17.25416 -17.02391 -16.57893 -16.28801 -15.91962 -15.61563 -15.22144 -14.98010 -14.71338 -14.38631 -14.02920 -13.90219 -13.57292 -13.53987 -13.26888 -13.10989 -12.75020 -12.47899 -12.28253 -12.22998 -11.54489 -11.43928 -11.20728 -11.09381 -10.88884 -10.67037 -10.55947 -10.36450 -9.48389 -9.04380 -8.20714 -6.31279 -0.86753 0.07374 0.54622 0.74223 1.39620 1.39923 1.53354 1.53722 1.56536 1.95010 2.40611 3.12434 3.20058 3.35437 3.75475 3.83311 3.99984 4.05710 4.16477 4.24823 4.35391 4.58307 4.68479 4.70913 4.72385 4.94868 4.96686 4.99874 5.06903 5.09080 5.23632 5.46873 5.51823 5.75051 5.85906 5.92163 5.95002 6.26223 6.30110 6.52445 6.85815 7.37839 8.91197 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.035795 B = 0.002156 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.046726 B =12986.232273 C =13266.797074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.094 4.094 11 C 0.073 3.927 12 N -0.688 5.688 13 C 0.136 3.864 14 C -0.204 4.204 15 C 0.051 3.949 16 N -0.470 5.470 17 C 0.125 3.875 18 C -0.002 4.002 19 C -0.137 4.137 20 C -0.224 4.224 21 C -0.002 4.002 22 O -0.184 6.184 23 S 0.119 5.881 24 H 0.264 0.736 25 H -0.007 1.007 26 H -0.006 1.006 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.341 0.659 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.196 0.804 35 H 0.160 0.840 36 H 0.185 0.815 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.193 -28.986 -3.985 31.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.132 4.132 11 C -0.056 4.056 12 N -0.319 5.319 13 C 0.005 3.995 14 C -0.325 4.325 15 C -0.102 4.102 16 N -0.186 5.186 17 C -0.148 4.148 18 C -0.055 4.055 19 C -0.162 4.162 20 C -0.243 4.243 21 C -0.071 4.071 22 O -0.080 6.080 23 S 0.376 5.624 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.013 0.987 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.213 0.787 35 H 0.178 0.822 36 H 0.202 0.798 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 11.071 -28.826 -4.244 31.169 hybrid contribution -0.417 1.244 0.118 1.317 sum 10.654 -27.583 -4.126 29.855 Atomic orbital electron populations 1.70095 1.07706 1.27694 1.51803 1.25987 0.95821 1.03365 0.94810 0.85401 0.79029 0.78803 0.77824 1.18741 1.20304 1.20307 1.21731 0.93507 0.92496 1.50309 0.92400 1.18977 0.94418 0.92942 0.94973 1.21380 0.98081 0.93015 1.00703 1.21875 0.93774 0.89506 1.00458 1.60568 1.20065 1.00879 1.50399 1.20343 0.91697 0.84171 1.03248 1.25959 1.06936 1.04993 0.94649 1.21813 0.94252 0.92732 1.01363 1.66543 1.16891 1.17175 1.17987 1.24121 1.00431 0.99159 0.91067 1.18699 1.03370 1.00823 0.82575 1.22203 0.96783 0.95564 1.01632 1.22226 1.05331 1.04578 0.92128 1.25268 0.90966 0.88830 1.01991 1.84067 1.50856 1.46425 1.26661 1.85038 1.36988 1.29901 1.10439 0.92766 0.98895 0.98715 0.92900 0.93325 0.95251 0.90953 0.84083 0.87344 0.92987 0.78722 0.82235 0.79808 0.72998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.32 9.11 25.60 0.23 -31.08 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.86 5.41 30.59 0.17 -3.69 16 11 C 0.07 2.38 5.69 86.30 0.49 2.87 16 12 N -0.69 -18.84 6.49 -517.92 -3.36 -22.20 16 13 C 0.14 3.01 6.21 85.55 0.53 3.54 16 14 C -0.20 -4.56 6.10 24.65 0.15 -4.41 16 15 C 0.05 1.16 11.14 83.74 0.93 2.10 16 16 N -0.47 -11.88 10.52 -190.42 -2.00 -13.88 16 17 C 0.12 3.02 7.46 87.22 0.65 3.67 16 18 C 0.00 -0.04 7.22 24.14 0.17 0.13 16 19 C -0.14 -2.45 10.80 22.43 0.24 -2.20 16 20 C -0.22 -2.55 10.88 22.11 0.24 -2.31 16 21 C 0.00 -0.02 12.08 67.04 0.81 0.79 16 22 O -0.18 -3.38 10.68 -6.94 -0.07 -3.46 16 23 S 0.12 2.61 23.42 -56.49 -1.32 1.29 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.34 9.15 8.72 -89.69 -0.78 8.37 16 32 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 37 H 0.25 0.04 8.06 -2.91 -0.02 0.01 16 Total: -1.00 -69.68 339.92 1.08 -68.61 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.30 Total: 8.45 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 5.23 Total: -28.82 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -5.08 Total: -92.84 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -0.07 Total: -3.46 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.32 Total: 1.29 kcal Total: -69.68 1.08 -68.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193084303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.387 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds