Wall clock time and date at job start Tue Mar 31 2020 06:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47219 * 2 1 4 4 N 1.46498 * 109.47278 * 180.02562 * 3 2 1 5 5 C 1.36932 * 120.00157 * 264.52276 * 4 3 2 6 6 H 1.08001 * 120.00277 * 191.07478 * 5 4 3 7 7 C 1.38818 * 119.99818 * 11.06860 * 5 4 3 8 8 N 1.31617 * 119.99810 * 19.05728 * 7 5 4 9 9 Si 1.86799 * 119.99738 * 199.06176 * 7 5 4 10 10 H 1.48501 * 109.47496 * 84.97827 * 9 7 5 11 11 H 1.48503 * 109.46851 * 204.97161 * 9 7 5 12 12 H 1.48501 * 109.47558 * 324.97308 * 9 7 5 13 13 C 1.46503 * 119.99840 * 84.51430 * 4 3 2 14 14 C 1.50696 * 109.47246 * 270.00185 * 13 4 3 15 15 C 1.33679 * 125.86557 * 90.00681 * 14 13 4 16 16 N 1.31330 * 115.87837 * 179.97438 * 15 14 13 17 17 C 1.30491 * 116.97074 * 0.02562 * 16 15 14 18 18 C 1.47099 * 125.48752 * 179.97438 * 17 16 15 19 19 C 1.36260 * 125.95886 * 0.02562 * 18 17 16 20 20 C 1.40783 * 106.71881 * 180.02562 * 19 18 17 21 21 C 1.34815 * 107.07892 * 359.97438 * 20 19 18 22 22 O 1.34271 * 108.72343 * 0.26716 * 21 20 19 23 23 S 1.76177 * 109.02769 * 0.23562 * 17 16 15 24 24 H 1.08997 * 109.47031 * 300.00176 * 1 2 3 25 25 H 1.08994 * 109.47045 * 59.99908 * 1 2 3 26 26 H 1.08996 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46775 * 239.99794 * 2 1 3 28 28 H 1.09000 * 109.46619 * 120.00244 * 2 1 3 29 29 H 1.08997 * 109.47263 * 59.99966 * 3 2 1 30 30 H 1.09006 * 109.46809 * 300.00157 * 3 2 1 31 31 H 0.97001 * 119.99627 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46426 * 150.00405 * 13 4 3 33 33 H 1.08997 * 109.47176 * 30.00550 * 13 4 3 34 34 H 1.08000 * 122.06612 * 359.95058 * 15 14 13 35 35 H 1.07995 * 126.64142 * 0.03386 * 19 18 17 36 36 H 1.08007 * 126.46142 * 180.02562 * 20 19 18 37 37 H 1.08003 * 125.64317 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5555 1.1795 6 1 5.2552 1.7352 1.1707 7 6 3.5160 1.4392 2.3874 8 7 2.3337 0.8623 2.4282 9 14 4.2868 2.1016 3.9547 10 1 3.9789 3.5486 4.0847 11 1 3.7354 1.3714 5.1244 12 1 5.7586 1.9115 3.9014 13 6 4.2370 1.3214 -1.2639 14 6 4.4880 -0.1345 -1.5615 15 6 3.6801 -0.9427 -2.2550 16 7 4.0931 -2.1812 -2.3976 17 6 5.2376 -2.4900 -1.8520 18 6 5.8743 -3.8153 -1.8953 19 6 5.3732 -4.9241 -2.5087 20 6 6.3047 -5.9587 -2.2991 21 6 7.3179 -5.4390 -1.5773 22 8 7.0524 -4.1462 -1.3304 23 16 5.8938 -1.0658 -1.0489 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.8625 0.7814 3.2722 32 1 5.1895 1.8453 -1.1835 33 1 3.6476 1.7604 -2.0688 34 1 2.7452 -0.5986 -2.6721 35 1 4.4419 -4.9954 -3.0507 36 1 6.2234 -6.9765 -2.6510 37 1 8.1956 -5.9752 -1.2477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194352766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:33 Heat of formation + Delta-G solvation = 88.538028 kcal Electronic energy + Delta-G solvation = -20847.804099 eV Core-core repulsion = 17719.981301 eV Total energy + Delta-G solvation = -3127.822798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41220 -38.88557 -36.43908 -33.03144 -32.39655 -31.99933 -30.77688 -28.77263 -25.89106 -25.62653 -24.00311 -21.95907 -21.39628 -21.26757 -20.04716 -19.11976 -17.54843 -17.06513 -16.56667 -16.02763 -15.29315 -15.00322 -14.07651 -13.92546 -13.66398 -13.55512 -13.26416 -12.95469 -12.83390 -12.68986 -12.44144 -11.96120 -11.74858 -11.53522 -11.08764 -10.80664 -10.71976 -10.40615 -10.14716 -10.10015 -9.98915 -9.89797 -9.45470 -9.22249 -9.11844 -8.63639 -8.50684 -7.58129 -7.08584 -5.95709 -3.26139 0.73698 1.84900 2.04229 2.38006 2.71263 2.79322 3.28569 3.35446 3.35911 3.57179 4.32835 4.61485 5.04760 5.12914 5.17411 5.34679 5.36319 5.73588 5.85879 5.88121 5.96015 6.07240 6.19242 6.21450 6.29683 6.45607 6.50807 6.53765 6.61942 6.74191 6.90165 7.11137 7.13769 7.21926 7.48594 7.68010 8.04611 8.15259 8.21499 9.01275 9.58654 10.02832 11.02373 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.004967 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.386147 B = 5636.049170 C = 6285.590857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.169 3.831 4 N -0.572 5.572 5 C -0.245 4.245 6 H 0.078 0.922 7 C 0.001 3.999 8 N -0.882 5.882 9 Si 0.910 3.090 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.206 3.794 14 C -0.174 4.174 15 C 0.007 3.993 16 N -0.439 5.439 17 C 0.071 3.929 18 C 0.069 3.931 19 C -0.165 4.165 20 C -0.213 4.213 21 C -0.037 4.037 22 O -0.171 6.171 23 S 0.105 5.895 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.007 0.993 31 H 0.257 0.743 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.168 0.832 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 -6.680 -8.060 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.044 3.956 4 N -0.288 5.288 5 C -0.375 4.375 6 H 0.096 0.904 7 C -0.199 4.199 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.204 1.204 13 C 0.076 3.924 14 C -0.301 4.301 15 C -0.146 4.146 16 N -0.155 5.155 17 C -0.201 4.201 18 C 0.016 3.984 19 C -0.189 4.189 20 C -0.232 4.232 21 C -0.106 4.106 22 O -0.066 6.066 23 S 0.360 5.640 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.815 -6.564 -7.378 11.460 hybrid contribution -0.657 -0.044 0.614 0.900 sum 5.158 -6.608 -6.763 10.771 Atomic orbital electron populations 1.21612 0.98556 0.99298 0.99951 1.22229 0.92953 1.00235 1.01972 1.21072 0.80832 0.94950 0.98727 1.44881 1.02476 1.79823 1.01646 1.19459 0.93551 1.41201 0.83296 0.90421 1.24936 0.97391 0.99560 0.98004 1.70150 1.14608 1.42409 1.25317 0.86173 0.78719 0.78803 0.82375 1.21160 1.21594 1.20403 1.19693 0.97101 0.85764 0.89813 1.27888 0.96116 1.05967 1.00105 1.21160 1.02051 0.87072 1.04363 1.66312 1.10660 1.18749 1.19763 1.23494 0.96701 0.94640 1.05288 1.18778 0.86355 0.92260 1.01012 1.21782 1.01880 0.91009 1.04238 1.21763 0.95672 1.00902 1.04861 1.24102 1.01836 0.81513 1.03134 1.84063 1.34113 1.27671 1.60742 1.84945 1.23112 1.03488 1.52479 0.93114 0.95019 0.94871 0.95238 0.88568 0.88787 0.97471 0.93290 0.91993 0.91318 0.81485 0.82761 0.83143 0.77788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.91 37.16 0.37 -2.23 16 2 C -0.13 -2.97 5.57 -26.73 -0.15 -3.12 16 3 C 0.17 3.78 4.92 -4.05 -0.02 3.76 16 4 N -0.57 -13.10 2.52 -174.61 -0.44 -13.54 16 5 C -0.24 -6.14 9.74 -15.06 -0.15 -6.29 16 6 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 7 C 0.00 0.02 5.02 -17.43 -0.09 -0.07 16 8 N -0.88 -23.12 8.24 55.49 0.46 -22.66 16 9 Si 0.91 20.60 29.59 -169.99 -5.03 15.57 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.21 3.97 6.23 -5.19 -0.03 3.94 16 14 C -0.17 -3.37 5.88 -35.91 -0.21 -3.58 16 15 C 0.01 0.12 9.11 -19.36 -0.18 -0.05 16 16 N -0.44 -8.61 10.52 -11.54 -0.12 -8.73 16 17 C 0.07 1.35 7.46 -14.53 -0.11 1.24 16 18 C 0.07 1.19 7.22 -36.70 -0.26 0.92 16 19 C -0.17 -2.46 10.80 -39.33 -0.42 -2.88 16 20 C -0.21 -2.51 10.88 -39.83 -0.43 -2.95 16 21 C -0.04 -0.42 12.08 29.52 0.36 -0.07 16 22 O -0.17 -2.66 10.68 4.47 0.05 -2.61 16 23 S 0.10 2.00 23.42 -107.50 -2.52 -0.52 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.63 4.87 -51.93 -0.25 0.38 16 28 H 0.10 2.51 6.21 -51.93 -0.32 2.19 16 29 H 0.09 2.35 5.88 -51.93 -0.31 2.05 16 30 H 0.01 0.15 7.97 -51.93 -0.41 -0.27 16 31 H 0.26 6.62 8.31 -40.82 -0.34 6.29 16 32 H 0.06 1.14 8.03 -51.93 -0.42 0.73 16 33 H 0.07 1.17 7.95 -51.93 -0.41 0.76 16 34 H 0.17 2.93 7.39 -52.49 -0.39 2.54 16 35 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 37 H 0.21 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 324.19 15.07 4.89 4.89 Total: -1.00 -27.87 324.19 -8.65 -36.52 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.60 Total: 2.46 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.33 Total: -11.38 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.10 Total: -44.92 kcal Atomic # 8 Polarization: -2.66 SS G_CDS: 0.05 Total: -2.61 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.52 Total: -0.52 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.87 -8.65 -36.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194352766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.056 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds