Wall clock time and date at job start Tue Mar 31 2020 06:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47219 * 2 1 4 4 N 1.46498 * 109.47278 * 180.02562 * 3 2 1 5 5 C 1.36932 * 120.00157 * 264.52276 * 4 3 2 6 6 H 1.08001 * 120.00277 * 191.07478 * 5 4 3 7 7 C 1.38818 * 119.99818 * 11.06860 * 5 4 3 8 8 N 1.31617 * 119.99810 * 19.05728 * 7 5 4 9 9 Si 1.86799 * 119.99738 * 199.06176 * 7 5 4 10 10 H 1.48501 * 109.47496 * 84.97827 * 9 7 5 11 11 H 1.48503 * 109.46851 * 204.97161 * 9 7 5 12 12 H 1.48501 * 109.47558 * 324.97308 * 9 7 5 13 13 C 1.46503 * 119.99840 * 84.51430 * 4 3 2 14 14 C 1.50696 * 109.47246 * 270.00185 * 13 4 3 15 15 C 1.33679 * 125.86557 * 90.00681 * 14 13 4 16 16 N 1.31330 * 115.87837 * 179.97438 * 15 14 13 17 17 C 1.30491 * 116.97074 * 0.02562 * 16 15 14 18 18 C 1.47099 * 125.48752 * 179.97438 * 17 16 15 19 19 C 1.36260 * 125.95886 * 0.02562 * 18 17 16 20 20 C 1.40783 * 106.71881 * 180.02562 * 19 18 17 21 21 C 1.34815 * 107.07892 * 359.97438 * 20 19 18 22 22 O 1.34271 * 108.72343 * 0.26716 * 21 20 19 23 23 S 1.76177 * 109.02769 * 0.23562 * 17 16 15 24 24 H 1.08997 * 109.47031 * 300.00176 * 1 2 3 25 25 H 1.08994 * 109.47045 * 59.99908 * 1 2 3 26 26 H 1.08996 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46775 * 239.99794 * 2 1 3 28 28 H 1.09000 * 109.46619 * 120.00244 * 2 1 3 29 29 H 1.08997 * 109.47263 * 59.99966 * 3 2 1 30 30 H 1.09006 * 109.46809 * 300.00157 * 3 2 1 31 31 H 0.97001 * 119.99627 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46426 * 150.00405 * 13 4 3 33 33 H 1.08997 * 109.47176 * 30.00550 * 13 4 3 34 34 H 1.08000 * 122.06612 * 359.95058 * 15 14 13 35 35 H 1.07995 * 126.64142 * 0.03386 * 19 18 17 36 36 H 1.08007 * 126.46142 * 180.02562 * 20 19 18 37 37 H 1.08003 * 125.64317 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5555 1.1795 6 1 5.2552 1.7352 1.1707 7 6 3.5160 1.4392 2.3874 8 7 2.3337 0.8623 2.4282 9 14 4.2868 2.1016 3.9547 10 1 3.9789 3.5486 4.0847 11 1 3.7354 1.3714 5.1244 12 1 5.7586 1.9115 3.9014 13 6 4.2370 1.3214 -1.2639 14 6 4.4880 -0.1345 -1.5615 15 6 3.6801 -0.9427 -2.2550 16 7 4.0931 -2.1812 -2.3976 17 6 5.2376 -2.4900 -1.8520 18 6 5.8743 -3.8153 -1.8953 19 6 5.3732 -4.9241 -2.5087 20 6 6.3047 -5.9587 -2.2991 21 6 7.3179 -5.4390 -1.5773 22 8 7.0524 -4.1462 -1.3304 23 16 5.8938 -1.0658 -1.0489 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.8625 0.7814 3.2722 32 1 5.1895 1.8453 -1.1835 33 1 3.6476 1.7604 -2.0688 34 1 2.7452 -0.5986 -2.6721 35 1 4.4419 -4.9954 -3.0507 36 1 6.2234 -6.9765 -2.6510 37 1 8.1956 -5.9752 -1.2477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194352766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:32 Heat of formation + Delta-G solvation = 73.770314 kcal Electronic energy + Delta-G solvation = -20848.444475 eV Core-core repulsion = 17719.981301 eV Total energy + Delta-G solvation = -3128.463174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.51733 -40.41270 -38.12196 -34.27487 -33.86933 -33.72507 -32.19819 -30.21734 -27.41837 -27.28787 -25.52369 -23.43194 -22.79672 -22.41328 -21.75890 -20.44358 -18.99653 -18.73970 -17.90951 -17.20030 -17.02532 -16.33557 -15.74533 -15.46468 -15.25377 -15.17414 -14.80246 -14.50668 -13.97221 -13.86171 -13.59582 -13.45248 -13.30397 -13.23948 -12.84717 -12.53804 -12.33550 -12.11461 -11.91189 -11.76849 -11.62437 -11.20848 -11.02265 -10.75712 -10.51581 -10.28300 -10.14534 -8.96465 -8.81161 -7.80165 -5.17710 -0.64134 0.34304 0.82192 0.89060 1.47331 1.49677 1.55387 1.61187 1.66336 2.10054 2.51673 3.28504 3.46256 3.71071 3.97858 4.04494 4.16756 4.23953 4.35189 4.55877 4.67169 4.74610 4.81145 4.87724 4.97028 4.97719 4.98992 5.03323 5.23220 5.26356 5.45930 5.52524 5.54994 5.59267 5.89558 6.01643 6.23718 6.34213 6.69972 7.18194 7.84326 8.23605 9.16354 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.004967 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.386147 B = 5636.049170 C = 6285.590857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.123 4.123 3 C 0.176 3.824 4 N -0.592 5.592 5 C -0.255 4.255 6 H 0.071 0.929 7 C -0.044 4.044 8 N -0.906 5.906 9 Si 0.958 3.042 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.277 1.277 13 C 0.209 3.791 14 C -0.186 4.186 15 C 0.014 3.986 16 N -0.461 5.461 17 C 0.092 3.908 18 C 0.012 3.988 19 C -0.149 4.149 20 C -0.219 4.219 21 C -0.012 4.012 22 O -0.188 6.188 23 S 0.092 5.908 24 H 0.038 0.962 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.246 0.754 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.184 0.816 35 H 0.157 0.843 36 H 0.187 0.813 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 -8.817 -9.836 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.051 3.949 4 N -0.310 5.310 5 C -0.385 4.385 6 H 0.089 0.911 7 C -0.240 4.240 8 N -0.552 5.552 9 Si 0.787 3.213 10 H -0.212 1.212 11 H -0.227 1.227 12 H -0.202 1.202 13 C 0.080 3.920 14 C -0.312 4.312 15 C -0.137 4.137 16 N -0.177 5.177 17 C -0.181 4.181 18 C -0.041 4.041 19 C -0.174 4.174 20 C -0.237 4.237 21 C -0.081 4.081 22 O -0.084 6.084 23 S 0.348 5.652 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.201 0.799 35 H 0.175 0.825 36 H 0.205 0.795 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 6.909 -8.678 -9.183 14.401 hybrid contribution -0.749 0.265 0.860 1.171 sum 6.160 -8.413 -8.323 13.342 Atomic orbital electron populations 1.21517 0.96476 1.00017 1.00562 1.22030 0.94733 0.99603 0.99855 1.20879 0.81011 0.94875 0.98110 1.44732 1.02593 1.81855 1.01854 1.19498 0.93239 1.41383 0.84397 0.91082 1.25436 0.98116 1.00575 0.99909 1.70322 1.15709 1.44430 1.24717 0.85428 0.77946 0.78016 0.79895 1.21154 1.22656 1.20233 1.19728 0.97419 0.85739 0.89138 1.27740 0.96486 1.05708 1.01256 1.21464 1.02094 0.86847 1.03336 1.66400 1.11178 1.19057 1.21068 1.24035 0.95823 0.95258 1.02948 1.18757 0.88284 0.92163 1.04886 1.22124 1.02032 0.91223 1.01996 1.22183 0.94688 1.01890 1.04977 1.25237 1.02593 0.79860 1.00384 1.84066 1.33595 1.29744 1.61024 1.84957 1.23691 1.04112 1.52438 0.94263 0.92559 0.94073 0.94898 0.92856 0.91821 0.95361 0.94431 0.91593 0.88777 0.79891 0.82496 0.79531 0.72978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.91 71.98 0.71 -4.09 16 2 C -0.12 -5.45 5.57 30.59 0.17 -5.28 16 3 C 0.18 7.96 4.92 86.38 0.42 8.38 16 4 N -0.59 -27.40 2.52 -706.35 -1.78 -29.18 16 5 C -0.25 -13.14 9.74 84.04 0.82 -12.32 16 6 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 7 C -0.04 -2.34 5.02 84.86 0.43 -1.91 16 8 N -0.91 -49.65 8.24 21.65 0.18 -49.47 16 9 Si 0.96 43.85 29.59 68.60 2.03 45.88 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 C 0.21 7.93 6.23 85.63 0.53 8.46 16 14 C -0.19 -7.14 5.88 24.65 0.14 -6.99 16 15 C 0.01 0.53 9.11 83.73 0.76 1.29 16 16 N -0.46 -17.65 10.52 -190.42 -2.00 -19.65 16 17 C 0.09 3.45 7.46 87.22 0.65 4.10 16 18 C 0.01 0.39 7.22 24.14 0.17 0.56 16 19 C -0.15 -4.06 10.80 22.43 0.24 -3.82 16 20 C -0.22 -4.22 10.88 22.11 0.24 -3.98 16 21 C -0.01 -0.23 12.08 67.03 0.81 0.58 16 22 O -0.19 -5.42 10.68 -6.91 -0.07 -5.50 16 23 S 0.09 3.52 23.42 -56.49 -1.32 2.20 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.03 1.39 4.87 -2.38 -0.01 1.38 16 28 H 0.05 2.87 6.21 -2.39 -0.01 2.85 16 29 H 0.06 3.29 5.88 -2.39 -0.01 3.27 16 30 H 0.03 1.13 7.97 -2.38 -0.02 1.11 16 31 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 32 H 0.07 2.41 8.03 -2.39 -0.02 2.40 16 33 H 0.09 3.04 7.95 -2.39 -0.02 3.02 16 34 H 0.18 6.08 7.39 -2.91 -0.02 6.06 16 35 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.25 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -62.84 324.19 4.22 -58.62 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.08 Total: 12.12 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 6.11 Total: -15.01 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -3.61 Total: -98.30 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.07 Total: -5.50 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.32 Total: 2.20 kcal Total: -62.84 4.22 -58.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194352766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.391 kcal (2) G-P(sol) polarization free energy of solvation -62.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds