Wall clock time and date at job start Tue Mar 31 2020 06:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47033 * 2 1 4 4 C 1.50697 * 109.47031 * 239.99594 * 2 1 3 5 5 H 1.07994 * 120.00121 * 239.99627 * 4 2 1 6 6 C 1.37878 * 119.99902 * 60.00398 * 4 2 1 7 7 N 1.31510 * 120.00126 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99752 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47175 * 59.99747 * 8 6 4 10 10 H 1.48501 * 109.46996 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47161 * 299.99513 * 8 6 4 12 12 N 1.46902 * 109.47271 * 119.99597 * 2 1 3 13 13 C 1.46905 * 110.99614 * 58.95234 * 12 2 1 14 14 C 1.46906 * 111.00140 * 295.00510 * 12 2 1 15 15 C 1.50697 * 109.47071 * 189.99962 * 14 12 2 16 16 C 1.33684 * 125.86618 * 89.71149 * 15 14 12 17 17 N 1.31331 * 115.87345 * 180.26622 * 16 15 14 18 18 C 1.30484 * 116.96990 * 359.97438 * 17 16 15 19 19 C 1.47104 * 125.48461 * 180.02562 * 18 17 16 20 20 C 1.36260 * 125.96171 * 359.96859 * 19 18 17 21 21 C 1.40778 * 106.72787 * 179.97438 * 20 19 18 22 22 C 1.34825 * 107.07134 * 359.97438 * 21 20 19 23 23 O 1.34273 * 108.72521 * 359.77232 * 22 21 20 24 24 S 1.76171 * 109.03490 * 0.02562 * 18 17 16 25 25 H 1.09005 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47125 * 300.00233 * 1 2 3 27 27 H 1.08996 * 109.46855 * 60.00548 * 1 2 3 28 28 H 0.97004 * 119.99915 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47197 * 296.04845 * 13 12 2 30 30 H 1.08997 * 109.47159 * 56.04898 * 13 12 2 31 31 H 1.08999 * 109.46820 * 176.04748 * 13 12 2 32 32 H 1.08997 * 109.46952 * 69.99067 * 14 12 2 33 33 H 1.08997 * 109.46359 * 309.99802 * 14 12 2 34 34 H 1.07997 * 122.06616 * 0.24214 * 16 15 14 35 35 H 1.08006 * 126.63296 * 359.95791 * 20 19 18 36 36 H 1.08000 * 126.46497 * 180.02562 * 21 20 19 37 37 H 1.08003 * 125.63812 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5200 -4.0080 10 1 1.8270 -0.4202 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0197 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.5703 -0.1878 4.0536 17 7 4.0157 -0.8460 5.0992 18 6 3.2449 -1.7818 5.5817 19 6 3.5561 -2.6303 6.7423 20 6 4.6920 -2.5744 7.4928 21 6 4.5665 -3.5583 8.4919 22 6 3.3745 -4.1605 8.3067 23 8 2.7646 -3.5943 7.2530 24 16 1.7716 -1.8657 4.6194 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.7083 1.1607 -3.4845 29 1 0.4420 -2.0730 1.3348 30 1 1.8167 -2.5950 0.3320 31 1 1.9617 -2.5867 2.1060 32 1 0.5722 -0.0344 2.5725 33 1 1.9297 1.0871 2.3124 34 1 4.1404 0.6026 3.5883 35 1 5.5272 -1.9049 7.3488 36 1 5.2884 -3.7869 9.2619 37 1 2.9747 -4.9631 8.9087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194379799.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:54 Heat of formation + Delta-G solvation = 74.911919 kcal Electronic energy + Delta-G solvation = -20208.394234 eV Core-core repulsion = 17079.980564 eV Total energy + Delta-G solvation = -3128.413671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.74669 -39.42491 -37.31011 -33.41715 -33.07549 -31.74593 -29.91928 -28.31286 -26.54264 -25.23675 -25.03067 -23.16355 -21.95538 -21.59993 -19.58778 -19.30312 -17.86933 -17.18999 -16.37659 -16.22859 -15.56890 -15.29963 -14.53867 -14.35606 -13.89552 -13.75210 -13.60008 -13.16559 -13.09873 -12.84858 -12.73332 -12.15901 -11.73398 -11.40793 -11.20435 -11.02703 -10.82787 -10.75636 -10.52024 -10.26184 -10.09155 -9.97004 -9.69442 -9.62942 -9.11030 -8.96231 -8.43327 -8.03715 -7.29539 -6.05749 -4.09858 0.27852 1.26130 1.67344 1.76691 2.37823 2.41910 3.09608 3.30656 3.34940 3.38204 4.22435 4.38193 4.75136 4.80693 4.92745 4.99379 5.16619 5.26647 5.44240 5.55704 5.63639 5.75366 5.96077 6.00861 6.12151 6.17401 6.27990 6.30297 6.58820 6.74444 6.76695 6.82137 7.02043 7.36261 7.63225 7.69803 7.75776 8.00573 8.28326 8.48783 8.95169 9.55331 11.01292 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.003171 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.575453 B = 8828.874515 C = 8963.738984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.212 3.788 3 H 0.042 0.958 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.527 5.527 13 C 0.028 3.972 14 C 0.122 3.878 15 C -0.166 4.166 16 C 0.041 3.959 17 N -0.444 5.444 18 C 0.111 3.889 19 C 0.048 3.952 20 C -0.146 4.146 21 C -0.215 4.215 22 C -0.023 4.023 23 O -0.169 6.169 24 S 0.108 5.892 25 H 0.031 0.969 26 H 0.007 0.993 27 H 0.090 0.910 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.182 0.818 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 -6.495 19.858 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.060 0.940 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.251 5.251 13 C -0.121 4.121 14 C -0.009 4.009 15 C -0.288 4.288 16 C -0.111 4.111 17 N -0.159 5.159 18 C -0.162 4.162 19 C -0.005 4.005 20 C -0.170 4.170 21 C -0.234 4.234 22 C -0.093 4.093 23 O -0.065 6.065 24 S 0.364 5.636 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.199 0.801 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.251 -6.947 19.770 21.076 hybrid contribution -0.007 0.182 -1.115 1.129 sum 2.244 -6.765 18.656 19.971 Atomic orbital electron populations 1.22435 1.00725 0.99505 1.00679 1.19353 0.89832 0.94661 0.85516 0.93975 1.21051 1.30854 1.12625 0.89540 0.91904 1.24914 0.95144 0.95101 0.99000 1.69865 1.36849 1.22987 1.23627 0.86566 0.79291 0.79590 0.82003 1.20353 1.21359 1.20161 1.62454 1.59481 1.02070 1.01137 1.22354 0.96880 0.91084 1.01733 1.20548 0.95717 0.98044 0.86568 1.26213 0.99774 1.00282 1.02526 1.21504 0.94003 1.02145 0.93430 1.66476 1.32019 1.05819 1.11594 1.23742 0.95074 0.98982 0.98443 1.18669 0.91729 0.93736 0.96344 1.21894 0.98495 1.01116 0.95508 1.21834 0.99125 0.99750 1.02728 1.24231 0.94161 1.00624 0.90268 1.84066 1.42926 1.40856 1.38608 1.85076 1.21275 1.33893 1.23380 0.95006 0.97367 0.89116 0.92868 0.96312 0.90220 0.93926 0.93898 0.88819 0.80079 0.82364 0.82758 0.77416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.28 37.16 0.31 -3.76 16 2 C 0.21 5.14 2.34 -68.86 -0.16 4.97 16 3 H 0.04 1.11 8.03 -51.93 -0.42 0.69 16 4 C -0.50 -13.41 7.88 -34.44 -0.27 -13.69 16 5 H 0.06 1.69 6.77 -52.49 -0.36 1.34 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.90 11.32 55.43 0.63 -24.28 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.53 -11.00 4.73 -237.73 -1.13 -12.12 16 13 C 0.03 0.56 8.55 60.07 0.51 1.07 16 14 C 0.12 2.12 4.93 -4.97 -0.02 2.10 16 15 C -0.17 -2.65 5.30 -35.91 -0.19 -2.84 16 16 C 0.04 0.63 11.14 -19.36 -0.22 0.41 16 17 N -0.44 -6.96 10.52 -11.54 -0.12 -7.08 16 18 C 0.11 1.65 7.46 -14.53 -0.11 1.55 16 19 C 0.05 0.64 7.22 -36.70 -0.26 0.38 16 20 C -0.15 -1.67 10.80 -39.33 -0.42 -2.09 16 21 C -0.22 -1.87 10.88 -39.83 -0.43 -2.30 16 22 C -0.02 -0.19 12.08 29.52 0.36 0.16 16 23 O -0.17 -2.02 10.68 4.47 0.05 -1.97 16 24 S 0.11 1.58 22.05 -107.50 -2.37 -0.79 16 25 H 0.03 0.72 6.47 -51.93 -0.34 0.39 16 26 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 27 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.02 0.36 6.51 -51.93 -0.34 0.02 16 30 H 0.08 1.69 6.41 -51.93 -0.33 1.35 16 31 H 0.04 0.76 6.11 -51.93 -0.32 0.45 16 32 H 0.04 0.74 6.94 -51.93 -0.36 0.38 16 33 H 0.09 1.56 8.00 -51.93 -0.42 1.15 16 34 H 0.18 2.51 8.06 -52.49 -0.42 2.08 16 35 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -29.33 320.91 -8.50 -37.83 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.36 Total: 0.02 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -1.01 Total: -12.51 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.62 Total: -43.48 kcal Atomic # 8 Polarization: -2.02 SS G_CDS: 0.05 Total: -1.97 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.37 Total: -0.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.33 -8.50 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194379799.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.746 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds