Wall clock time and date at job start Tue Mar 31 2020 06:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47033 * 2 1 4 4 C 1.50697 * 109.47031 * 239.99594 * 2 1 3 5 5 H 1.07994 * 120.00121 * 239.99627 * 4 2 1 6 6 C 1.37878 * 119.99902 * 60.00398 * 4 2 1 7 7 N 1.31510 * 120.00126 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99752 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47175 * 59.99747 * 8 6 4 10 10 H 1.48501 * 109.46996 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47161 * 299.99513 * 8 6 4 12 12 N 1.46902 * 109.47271 * 119.99597 * 2 1 3 13 13 C 1.46905 * 110.99614 * 58.95234 * 12 2 1 14 14 C 1.46906 * 111.00140 * 295.00510 * 12 2 1 15 15 C 1.50697 * 109.47071 * 189.99962 * 14 12 2 16 16 C 1.33684 * 125.86618 * 89.71149 * 15 14 12 17 17 N 1.31331 * 115.87345 * 180.26622 * 16 15 14 18 18 C 1.30484 * 116.96990 * 359.97438 * 17 16 15 19 19 C 1.47104 * 125.48461 * 180.02562 * 18 17 16 20 20 C 1.36260 * 125.96171 * 359.96859 * 19 18 17 21 21 C 1.40778 * 106.72787 * 179.97438 * 20 19 18 22 22 C 1.34825 * 107.07134 * 359.97438 * 21 20 19 23 23 O 1.34273 * 108.72521 * 359.77232 * 22 21 20 24 24 S 1.76171 * 109.03490 * 0.02562 * 18 17 16 25 25 H 1.09005 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47125 * 300.00233 * 1 2 3 27 27 H 1.08996 * 109.46855 * 60.00548 * 1 2 3 28 28 H 0.97004 * 119.99915 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47197 * 296.04845 * 13 12 2 30 30 H 1.08997 * 109.47159 * 56.04898 * 13 12 2 31 31 H 1.08999 * 109.46820 * 176.04748 * 13 12 2 32 32 H 1.08997 * 109.46952 * 69.99067 * 14 12 2 33 33 H 1.08997 * 109.46359 * 309.99802 * 14 12 2 34 34 H 1.07997 * 122.06616 * 0.24214 * 16 15 14 35 35 H 1.08006 * 126.63296 * 359.95791 * 20 19 18 36 36 H 1.08000 * 126.46497 * 180.02562 * 21 20 19 37 37 H 1.08003 * 125.63812 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5200 -4.0080 10 1 1.8270 -0.4202 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0197 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.5703 -0.1878 4.0536 17 7 4.0157 -0.8460 5.0992 18 6 3.2449 -1.7818 5.5817 19 6 3.5561 -2.6303 6.7423 20 6 4.6920 -2.5744 7.4928 21 6 4.5665 -3.5583 8.4919 22 6 3.3745 -4.1605 8.3067 23 8 2.7646 -3.5943 7.2530 24 16 1.7716 -1.8657 4.6194 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.7083 1.1607 -3.4845 29 1 0.4420 -2.0730 1.3348 30 1 1.8167 -2.5950 0.3320 31 1 1.9617 -2.5867 2.1060 32 1 0.5722 -0.0344 2.5725 33 1 1.9297 1.0871 2.3124 34 1 4.1404 0.6026 3.5883 35 1 5.5272 -1.9049 7.3488 36 1 5.2884 -3.7869 9.2619 37 1 2.9747 -4.9631 8.9087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194379799.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:54 Heat of formation + Delta-G solvation = 56.686333 kcal Electronic energy + Delta-G solvation = -20209.184555 eV Core-core repulsion = 17079.980564 eV Total energy + Delta-G solvation = -3129.203991 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.54772 -40.61626 -38.96536 -35.03316 -34.13239 -33.03056 -31.21289 -29.91802 -27.89509 -27.17513 -26.34726 -24.59839 -22.92020 -22.44698 -21.26075 -20.39408 -19.04716 -18.20539 -18.11664 -17.27593 -17.10317 -16.47480 -16.25172 -15.62559 -15.27846 -15.17275 -15.04092 -14.42113 -14.24491 -13.88813 -13.78221 -13.52431 -13.24271 -13.05936 -12.93691 -12.71897 -12.61448 -12.52993 -12.11715 -12.00109 -11.77532 -11.13572 -10.95524 -10.86039 -10.61243 -10.49344 -10.26073 -9.05436 -8.92474 -8.11186 -6.21712 -0.81050 0.11862 0.59497 0.77583 1.43619 1.44531 1.52024 1.56467 1.59062 1.98604 2.43195 3.18384 3.33398 3.43091 3.82904 3.87406 4.02298 4.13442 4.18684 4.46976 4.57430 4.62617 4.70737 4.76248 4.79662 4.89398 4.96958 5.01849 5.10075 5.11354 5.12062 5.49499 5.51225 5.69046 5.76231 5.97499 6.14065 6.40730 6.55180 6.64501 6.89912 7.47162 8.94544 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.003171 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.575453 B = 8828.874515 C = 8963.738984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.217 3.783 3 H 0.016 0.984 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.538 5.538 13 C 0.037 3.963 14 C 0.129 3.871 15 C -0.191 4.191 16 C 0.045 3.955 17 N -0.466 5.466 18 C 0.122 3.878 19 C 0.001 3.999 20 C -0.138 4.138 21 C -0.223 4.223 22 C -0.002 4.002 23 O -0.184 6.184 24 S 0.117 5.883 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.192 0.808 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 -8.204 21.885 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.111 3.889 3 H 0.034 0.966 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.262 5.262 13 C -0.112 4.112 14 C -0.001 4.001 15 C -0.312 4.312 16 C -0.107 4.107 17 N -0.182 5.182 18 C -0.151 4.151 19 C -0.051 4.051 20 C -0.163 4.163 21 C -0.242 4.242 22 C -0.071 4.071 23 O -0.080 6.080 24 S 0.374 5.626 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.208 0.792 35 H 0.177 0.823 36 H 0.203 0.797 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.774 -8.654 21.799 23.617 hybrid contribution -0.096 0.607 -1.489 1.611 sum 2.678 -8.047 20.310 22.009 Atomic orbital electron populations 1.22234 1.00134 0.99271 1.00365 1.19094 0.90129 0.93271 0.86451 0.96608 1.21329 1.30792 1.12555 0.90891 0.92635 1.25627 0.95364 0.95771 1.01642 1.69986 1.37680 1.24043 1.24115 0.85641 0.78698 0.78684 0.78775 1.19793 1.20981 1.19937 1.62303 1.59842 1.02590 1.01428 1.22260 0.97036 0.90438 1.01468 1.20437 0.96037 0.97974 0.85643 1.25928 1.00380 1.01892 1.02997 1.21706 0.93827 1.01973 0.93149 1.66534 1.32549 1.06842 1.12245 1.24156 0.94482 0.98194 0.98309 1.18660 0.93265 0.95722 0.97493 1.22197 0.97622 1.01040 0.95406 1.22216 1.00144 0.98950 1.02841 1.25277 0.93566 0.99877 0.88397 1.84069 1.43420 1.40813 1.39737 1.84928 1.21244 1.33321 1.23116 0.95050 0.95240 0.91752 0.92911 0.96062 0.92093 0.92234 0.93655 0.88545 0.79170 0.82275 0.79680 0.72900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.57 8.28 71.98 0.60 -6.97 16 2 C 0.22 10.72 2.34 44.17 0.10 10.82 16 3 H 0.02 0.87 8.03 -2.39 -0.02 0.85 16 4 C -0.52 -28.06 7.88 25.60 0.20 -27.85 16 5 H 0.06 3.03 6.77 -2.91 -0.02 3.01 16 6 C 0.01 0.81 5.30 84.66 0.45 1.25 16 7 N -0.92 -51.94 11.32 21.45 0.24 -51.69 16 8 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.54 -22.59 4.73 -906.03 -4.29 -26.88 16 13 C 0.04 1.44 8.55 127.69 1.09 2.53 16 14 C 0.13 4.50 4.93 85.55 0.42 4.92 16 15 C -0.19 -6.02 5.30 24.65 0.13 -5.89 16 16 C 0.05 1.39 11.14 83.73 0.93 2.32 16 17 N -0.47 -14.49 10.52 -190.42 -2.00 -16.49 16 18 C 0.12 3.57 7.46 87.22 0.65 4.22 16 19 C 0.00 0.03 7.22 24.14 0.17 0.21 16 20 C -0.14 -2.90 10.80 22.43 0.24 -2.66 16 21 C -0.22 -3.09 10.88 22.11 0.24 -2.85 16 22 C 0.00 -0.03 12.08 67.04 0.81 0.78 16 23 O -0.18 -3.99 10.68 -6.93 -0.07 -4.06 16 24 S 0.12 3.36 22.05 -56.49 -1.25 2.11 16 25 H 0.03 1.43 6.47 -2.38 -0.02 1.42 16 26 H 0.03 1.21 6.75 -2.39 -0.02 1.20 16 27 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 28 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 29 H 0.02 0.81 6.51 -2.39 -0.02 0.79 16 30 H 0.06 2.60 6.41 -2.39 -0.02 2.58 16 31 H 0.06 2.11 6.11 -2.39 -0.01 2.10 16 32 H 0.05 1.55 6.94 -2.39 -0.02 1.53 16 33 H 0.10 3.25 8.00 -2.39 -0.02 3.23 16 34 H 0.19 5.27 8.06 -2.91 -0.02 5.25 16 35 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.26 0.58 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -63.63 320.91 1.79 -61.84 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.09 Total: 8.86 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 6.04 Total: -19.17 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -6.05 Total: -95.06 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.07 Total: -4.06 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.25 Total: 2.11 kcal Total: -63.63 1.79 -61.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194379799.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.523 kcal (2) G-P(sol) polarization free energy of solvation -63.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds