Wall clock time and date at job start Tue Mar 31 2020 06:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46833 * 2 1 4 4 H 1.08999 * 109.46686 * 179.25170 * 3 2 1 5 5 C 1.50701 * 109.46758 * 299.24051 * 3 2 1 6 6 H 1.08006 * 119.99604 * 120.00124 * 5 3 2 7 7 C 1.37870 * 120.00683 * 300.00655 * 5 3 2 8 8 N 1.31514 * 120.00706 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99702 * 359.97438 * 7 5 3 10 10 H 1.48508 * 109.47038 * 90.00120 * 9 7 5 11 11 H 1.48500 * 109.47410 * 209.99914 * 9 7 5 12 12 H 1.48495 * 109.47037 * 330.00523 * 9 7 5 13 13 N 1.46900 * 109.47495 * 59.24436 * 3 2 1 14 14 C 1.46899 * 110.99554 * 85.93527 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54727 * 14 13 3 16 16 C 1.33692 * 125.86674 * 89.72135 * 15 14 13 17 17 N 1.31325 * 115.87816 * 179.84180 * 16 15 14 18 18 C 1.30494 * 116.96710 * 0.45453 * 17 16 15 19 19 C 1.47101 * 125.48344 * 179.78799 * 18 17 16 20 20 C 1.36266 * 125.95924 * 359.95977 * 19 18 17 21 21 C 1.40779 * 106.71912 * 179.97438 * 20 19 18 22 22 C 1.34820 * 107.08059 * 0.02562 * 21 20 19 23 23 O 1.34277 * 108.71975 * 359.76880 * 22 21 20 24 24 S 1.76173 * 109.03336 * 359.75715 * 18 17 16 25 25 H 1.09005 * 109.46845 * 175.56758 * 1 2 3 26 26 H 1.08995 * 109.47282 * 55.56825 * 1 2 3 27 27 H 1.09000 * 109.47192 * 295.56101 * 1 2 3 28 28 H 1.09006 * 109.47145 * 119.99224 * 2 1 3 29 29 H 1.08990 * 109.47132 * 239.99752 * 2 1 3 30 30 H 0.96993 * 120.00013 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99774 * 209.89347 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54558 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.55234 * 14 13 3 34 34 H 1.07996 * 122.05601 * 0.02562 * 16 15 14 35 35 H 1.08000 * 126.63673 * 359.96876 * 20 19 18 36 36 H 1.08007 * 126.46148 * 180.02562 * 21 20 19 37 37 H 1.08000 * 125.64097 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1298 1.4426 0.0134 5 6 1.5530 2.1474 -1.2398 6 1 0.9308 3.0259 -1.1523 7 6 1.9015 1.6709 -2.4857 8 7 1.4769 2.2863 -3.5677 9 14 2.9780 0.1517 -2.6370 10 1 2.1204 -1.0597 -2.6874 11 1 3.7852 0.2388 -3.8804 12 1 3.8840 0.0682 -1.4635 13 7 1.5354 2.1404 1.1902 14 6 2.4169 1.9177 2.3440 15 6 1.9295 2.7340 3.5133 16 6 1.0481 2.3334 4.4352 17 7 0.7643 3.2063 5.3744 18 6 1.3598 4.3653 5.3046 19 6 1.1775 5.4773 6.2502 20 6 0.3623 5.4737 7.3421 21 6 0.4992 6.7341 7.9539 22 6 1.3800 7.4391 7.2157 23 8 1.7913 6.6757 6.1904 24 16 2.4177 4.3838 3.8960 25 1 -0.3633 -1.0247 -0.0794 26 1 -0.3633 0.5810 -0.8476 27 1 -0.3633 0.4434 0.9271 28 1 1.8934 -0.5137 0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.7218 1.9507 -4.4441 31 1 1.4188 3.1260 1.0090 32 1 2.4075 0.8607 2.6098 33 1 3.4328 2.2192 2.0887 34 1 0.5996 1.3513 4.4108 35 1 -0.2671 4.6611 7.6738 36 1 -0.0060 7.0727 8.8465 37 1 1.7040 8.4493 7.4177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194486396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:35 Heat of formation + Delta-G solvation = 68.155614 kcal Electronic energy + Delta-G solvation = -19999.336982 eV Core-core repulsion = 16870.630336 eV Total energy + Delta-G solvation = -3128.706646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.78453 -39.48416 -36.78576 -33.58380 -33.18233 -31.82910 -31.02733 -29.07300 -26.84918 -25.49986 -23.45160 -23.15730 -22.04082 -21.68053 -19.57127 -19.44230 -18.13252 -17.28835 -16.60122 -16.40884 -15.80478 -15.22818 -14.54094 -14.42821 -14.02871 -13.70927 -13.62118 -13.19265 -13.15917 -13.01915 -12.80460 -12.63285 -12.36385 -11.78391 -11.32602 -11.02385 -10.75087 -10.61114 -10.30512 -10.27104 -10.06830 -9.76582 -9.74783 -9.38651 -9.25007 -9.02614 -8.63021 -8.11515 -7.63784 -6.14977 -4.14800 0.19511 1.17653 1.61784 1.67630 2.33034 2.37408 3.00911 3.23181 3.31803 3.34227 4.16894 4.33439 4.71600 4.74808 4.86227 4.90831 5.12558 5.19205 5.35837 5.50644 5.59733 5.71572 5.84693 5.93693 6.09457 6.11357 6.16076 6.20333 6.41084 6.64767 6.72724 6.84284 7.04404 7.15522 7.43776 7.52570 7.60585 7.78000 8.17521 8.51608 8.88797 9.46504 10.97705 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033127 B = 0.003207 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.019221 B = 8728.798076 C = 9073.717484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C 0.185 3.815 4 H 0.003 0.997 5 C -0.517 4.517 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.668 5.668 14 C 0.129 3.871 15 C -0.182 4.182 16 C 0.046 3.954 17 N -0.446 5.446 18 C 0.117 3.883 19 C 0.045 3.955 20 C -0.144 4.144 21 C -0.216 4.216 22 C -0.020 4.020 23 O -0.169 6.169 24 S 0.116 5.884 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.342 0.658 32 H 0.090 0.910 33 H 0.039 0.961 34 H 0.182 0.818 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 5.867 21.064 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.077 3.923 4 H 0.020 0.980 5 C -0.555 4.555 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.300 5.300 14 C -0.003 4.003 15 C -0.303 4.303 16 C -0.106 4.106 17 N -0.161 5.161 18 C -0.156 4.156 19 C -0.008 4.008 20 C -0.168 4.168 21 C -0.235 4.235 22 C -0.090 4.090 23 O -0.064 6.064 24 S 0.372 5.628 25 H 0.040 0.960 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.199 0.801 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.412 6.052 20.702 21.614 hybrid contribution 0.802 -1.081 -0.377 1.398 sum 2.214 4.970 20.325 21.040 Atomic orbital electron populations 1.21472 0.95427 0.98418 1.02964 1.21757 0.97522 0.97932 0.97924 1.19633 0.92965 0.91424 0.88310 0.97958 1.20989 1.32737 1.13407 0.88342 0.90297 1.24883 0.95449 0.96758 0.95689 1.69879 1.45220 1.40367 0.97873 0.86869 0.80819 0.83769 0.76872 1.20290 1.22505 1.19386 1.60661 1.47921 1.16906 1.04518 1.20459 0.94427 0.97864 0.87568 1.26194 1.03756 0.97054 1.03330 1.21500 0.98114 1.00520 0.90499 1.66487 1.23570 0.99954 1.26135 1.23761 1.00914 0.93715 0.97258 1.18649 1.00025 0.84515 0.97609 1.21899 1.01054 0.99004 0.94808 1.21841 1.03387 0.94829 1.03462 1.24254 0.99491 0.97366 0.87903 1.84071 1.55833 1.22101 1.44387 1.85180 1.42885 1.12166 1.22528 0.96018 0.91325 0.92699 0.95002 0.93949 0.92508 0.83999 0.89177 0.94335 0.80140 0.82348 0.82712 0.77350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.52 37.16 0.35 -2.22 16 2 C -0.11 -2.42 5.29 -26.73 -0.14 -2.56 16 3 C 0.19 4.17 1.89 -68.86 -0.13 4.04 16 4 H 0.00 0.07 6.77 -51.93 -0.35 -0.28 16 5 C -0.52 -13.82 7.87 -34.44 -0.27 -14.10 16 6 H 0.08 2.30 7.85 -52.48 -0.41 1.89 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 9 Si 0.89 21.52 24.38 -169.99 -4.14 17.38 16 10 H -0.28 -6.58 6.86 56.52 0.39 -6.19 16 11 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.25 6.53 56.52 0.37 -5.88 16 13 N -0.67 -12.86 5.61 -109.22 -0.61 -13.47 16 14 C 0.13 2.04 6.06 -4.97 -0.03 2.01 16 15 C -0.18 -2.66 6.05 -35.90 -0.22 -2.88 16 16 C 0.05 0.65 11.14 -19.36 -0.22 0.44 16 17 N -0.45 -6.59 10.52 -11.54 -0.12 -6.71 16 18 C 0.12 1.66 7.46 -14.53 -0.11 1.55 16 19 C 0.05 0.58 7.22 -36.70 -0.26 0.31 16 20 C -0.14 -1.57 10.80 -39.33 -0.42 -2.00 16 21 C -0.22 -1.81 10.88 -39.83 -0.43 -2.24 16 22 C -0.02 -0.16 12.08 29.52 0.36 0.19 16 23 O -0.17 -1.95 10.68 4.47 0.05 -1.91 16 24 S 0.12 1.62 23.42 -107.50 -2.52 -0.90 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.59 7.09 -51.93 -0.37 1.22 16 27 H 0.05 1.06 7.73 -51.93 -0.40 0.66 16 28 H 0.03 0.60 7.62 -51.93 -0.40 0.20 16 29 H 0.04 0.96 3.26 -51.93 -0.17 0.79 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 31 H 0.34 6.81 8.13 -39.29 -0.32 6.49 16 32 H 0.09 1.34 7.62 -51.93 -0.40 0.94 16 33 H 0.04 0.61 7.94 -51.93 -0.41 0.20 16 34 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 323.48 15.07 4.87 4.87 Total: -1.00 -30.22 323.48 -7.85 -38.07 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.52 Total: 4.03 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.62 Total: -15.46 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.04 Total: -46.09 kcal Atomic # 8 Polarization: -1.95 SS G_CDS: 0.05 Total: -1.91 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.14 Total: 17.38 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.52 Total: -0.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.22 -7.85 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194486396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.224 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds