Wall clock time and date at job start Tue Mar 31 2020 06:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47088 * 2 1 4 4 H 1.08997 * 109.47194 * 304.24785 * 3 2 1 5 5 C 1.50697 * 109.47196 * 184.24674 * 3 2 1 6 6 H 1.08005 * 119.99938 * 240.00172 * 5 3 2 7 7 C 1.37877 * 120.00109 * 59.99811 * 5 3 2 8 8 N 1.31519 * 119.99974 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00027 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47296 * 90.00163 * 9 7 5 11 11 H 1.48498 * 109.46793 * 210.00140 * 9 7 5 12 12 H 1.48498 * 109.47134 * 329.99899 * 9 7 5 13 13 N 1.46898 * 109.47012 * 64.24517 * 3 2 1 14 14 C 1.46900 * 110.99764 * 205.86871 * 13 3 2 15 15 C 1.50710 * 109.47122 * 174.80477 * 14 13 3 16 16 C 1.33685 * 125.86536 * 89.97654 * 15 14 13 17 17 N 1.31323 * 115.87673 * 179.76196 * 16 15 14 18 18 C 1.30491 * 116.96895 * 0.45820 * 17 16 15 19 19 C 1.47097 * 125.48795 * 179.83945 * 18 17 16 20 20 C 1.36262 * 125.96047 * 359.69188 * 19 18 17 21 21 C 1.40787 * 106.72639 * 179.97438 * 20 19 18 22 22 C 1.34827 * 107.07133 * 359.97438 * 21 20 19 23 23 O 1.34272 * 108.72183 * 0.24587 * 22 21 20 24 24 S 1.76175 * 109.03120 * 359.57279 * 18 17 16 25 25 H 1.09000 * 109.46716 * 174.90229 * 1 2 3 26 26 H 1.09002 * 109.46884 * 294.90309 * 1 2 3 27 27 H 1.08998 * 109.47137 * 54.90314 * 1 2 3 28 28 H 1.08994 * 109.46992 * 239.99865 * 2 1 3 29 29 H 1.09001 * 109.46695 * 119.99980 * 2 1 3 30 30 H 0.96995 * 119.99707 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00217 * 81.91797 * 13 3 2 32 32 H 1.09000 * 109.47269 * 54.80566 * 14 13 3 33 33 H 1.08997 * 109.47429 * 294.79999 * 14 13 3 34 34 H 1.08006 * 122.06287 * 359.97438 * 16 15 14 35 35 H 1.08002 * 126.63905 * 0.03024 * 20 19 18 36 36 H 1.07992 * 126.46256 * 180.02562 * 21 20 19 37 37 H 1.07995 * 125.63283 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5433 1.4438 -0.1052 6 1 4.1390 1.8918 0.6765 7 6 4.1584 0.8731 -1.1993 8 7 3.4330 0.3280 -2.1514 9 14 6.0218 0.8741 -1.3293 10 1 6.5630 -0.3551 -0.6959 11 1 6.4181 0.9093 -2.7600 12 1 6.5658 2.0691 -0.6356 13 7 1.6359 2.1047 1.2474 14 6 1.5392 3.5590 1.0639 15 6 1.0013 4.1895 2.3226 16 6 1.7318 4.6312 3.3514 17 7 1.0581 5.1527 4.3507 18 6 -0.2419 5.1764 4.2396 19 6 -1.1751 5.7115 5.2429 20 6 -0.8326 6.2588 6.4428 21 6 -2.0334 6.6352 7.0741 22 6 -3.0396 6.3046 6.2398 23 8 -2.5184 5.7426 5.1373 24 16 -0.6990 4.4712 2.6912 25 1 -0.3633 -1.0236 -0.0913 26 1 -0.3633 0.4327 0.9321 27 1 -0.3633 0.5909 -0.8408 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8657 -0.0732 -2.9212 31 1 2.2686 1.8764 1.9995 32 1 0.8681 3.7766 0.2331 33 1 2.5277 3.9646 0.8484 34 1 2.8099 4.5663 3.3588 35 1 0.1668 6.3810 6.8337 36 1 -2.1301 7.1015 8.0433 37 1 -4.0912 6.4615 6.4291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194486415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:37 Heat of formation + Delta-G solvation = 55.631618 kcal Electronic energy + Delta-G solvation = -19907.330771 eV Core-core repulsion = 16778.081044 eV Total energy + Delta-G solvation = -3129.249727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.72901 -39.37337 -36.38401 -33.47245 -33.08804 -31.70757 -30.88919 -28.94436 -26.59985 -25.38035 -23.55122 -22.48473 -21.86470 -21.57412 -19.61154 -19.42958 -17.92087 -17.22772 -16.66513 -16.35289 -15.47623 -14.98061 -14.60834 -14.30883 -13.88746 -13.67524 -13.47790 -13.11674 -12.97848 -12.79109 -12.52430 -12.29739 -11.81655 -11.32295 -11.19490 -11.16289 -10.91146 -10.67685 -10.28815 -10.21338 -9.82376 -9.66968 -9.64910 -9.48712 -9.16316 -9.10514 -8.45463 -8.03774 -7.41420 -6.07266 -4.20705 0.30978 1.31274 1.68663 1.83987 2.38693 2.43774 3.09535 3.23047 3.30673 3.32628 4.24220 4.33744 4.76540 4.82035 4.93591 5.07342 5.20192 5.41256 5.55262 5.60968 5.64908 5.77337 6.07964 6.18484 6.21681 6.29393 6.36466 6.46124 6.66175 6.78346 7.03641 7.12265 7.33523 7.49703 7.70115 7.70385 7.97531 8.02473 8.20370 8.51288 8.90225 9.47577 10.93306 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.003210 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.107362 B = 8720.808992 C = 9382.024518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.550 4.550 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.134 3.866 15 C -0.166 4.166 16 C 0.024 3.976 17 N -0.444 5.444 18 C 0.102 3.898 19 C 0.050 3.950 20 C -0.148 4.148 21 C -0.215 4.215 22 C -0.024 4.024 23 O -0.169 6.169 24 S 0.132 5.868 25 H 0.025 0.975 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.332 0.668 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 10.755 13.294 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.589 4.589 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.313 5.313 14 C 0.002 3.998 15 C -0.289 4.289 16 C -0.128 4.128 17 N -0.160 5.160 18 C -0.170 4.170 19 C -0.003 4.003 20 C -0.172 4.172 21 C -0.235 4.235 22 C -0.093 4.093 23 O -0.064 6.064 24 S 0.389 5.611 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.195 0.805 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -12.322 10.431 12.607 20.484 hybrid contribution 2.966 0.170 0.017 2.971 sum -9.356 10.601 12.625 18.955 Atomic orbital electron populations 1.21698 0.98946 0.98423 1.00354 1.21500 0.92117 0.98971 1.01831 1.19194 0.92931 0.91267 0.85745 0.94822 1.21837 0.92502 1.38522 1.06014 0.92713 1.24929 0.98096 0.94834 0.95568 1.69873 1.35009 1.37757 1.09509 0.86632 0.85861 0.78466 0.77262 1.20596 1.21173 1.20009 1.60978 1.55824 1.04128 1.10402 1.20263 0.99275 0.90541 0.89736 1.26386 0.94471 1.05034 1.02966 1.21517 1.01636 1.01044 0.88583 1.66444 1.03769 1.17040 1.28711 1.23755 0.91502 1.05605 0.96178 1.18669 0.80094 1.06268 0.95265 1.21884 1.00322 1.01608 0.93403 1.21830 0.92008 1.07290 1.02330 1.24223 0.99756 1.00219 0.85134 1.84066 1.19189 1.63436 1.39723 1.85081 1.07766 1.54730 1.13559 0.95553 0.93523 0.94430 0.89022 0.94977 0.92764 0.85128 0.90457 0.92397 0.80478 0.82441 0.82803 0.77427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.73 37.16 0.36 -2.41 16 2 C -0.11 -2.46 5.45 -26.73 -0.15 -2.61 16 3 C 0.22 5.10 1.98 -68.87 -0.14 4.96 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.55 -14.17 8.47 -34.44 -0.29 -14.47 16 6 H 0.05 1.39 7.73 -52.48 -0.41 0.99 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.29 11.30 55.43 0.63 -23.66 16 9 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.68 -13.62 5.72 -109.22 -0.62 -14.25 16 14 C 0.13 2.36 6.03 -4.97 -0.03 2.33 16 15 C -0.17 -2.62 6.14 -35.90 -0.22 -2.84 16 16 C 0.02 0.37 11.14 -19.37 -0.22 0.16 16 17 N -0.44 -6.93 10.52 -11.54 -0.12 -7.05 16 18 C 0.10 1.53 7.46 -14.53 -0.11 1.42 16 19 C 0.05 0.67 7.22 -36.70 -0.26 0.40 16 20 C -0.15 -1.70 10.80 -39.33 -0.42 -2.12 16 21 C -0.22 -1.88 10.88 -39.83 -0.43 -2.32 16 22 C -0.02 -0.20 12.08 29.52 0.36 0.16 16 23 O -0.17 -2.02 10.67 4.48 0.05 -1.97 16 24 S 0.13 1.95 23.42 -107.50 -2.52 -0.57 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.91 7.88 -51.93 -0.41 0.50 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.33 6.61 8.45 -39.29 -0.33 6.28 16 32 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 33 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.18 2.40 8.06 -52.48 -0.42 1.98 16 35 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -28.39 333.90 -9.01 -37.40 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.78 Total: 5.13 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -1.65 Total: -15.62 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.12 Total: -44.96 kcal Atomic # 8 Polarization: -2.02 SS G_CDS: 0.05 Total: -1.97 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.52 Total: -0.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.39 -9.01 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194486415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.028 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds