Wall clock time and date at job start Tue Mar 31 2020 06:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47088 * 2 1 4 4 H 1.08997 * 109.47194 * 304.24785 * 3 2 1 5 5 C 1.50697 * 109.47196 * 184.24674 * 3 2 1 6 6 H 1.08005 * 119.99938 * 240.00172 * 5 3 2 7 7 C 1.37877 * 120.00109 * 59.99811 * 5 3 2 8 8 N 1.31519 * 119.99974 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00027 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47296 * 90.00163 * 9 7 5 11 11 H 1.48498 * 109.46793 * 210.00140 * 9 7 5 12 12 H 1.48498 * 109.47134 * 329.99899 * 9 7 5 13 13 N 1.46898 * 109.47012 * 64.24517 * 3 2 1 14 14 C 1.46900 * 110.99764 * 205.86871 * 13 3 2 15 15 C 1.50710 * 109.47122 * 174.80477 * 14 13 3 16 16 C 1.33685 * 125.86536 * 89.97654 * 15 14 13 17 17 N 1.31323 * 115.87673 * 179.76196 * 16 15 14 18 18 C 1.30491 * 116.96895 * 0.45820 * 17 16 15 19 19 C 1.47097 * 125.48795 * 179.83945 * 18 17 16 20 20 C 1.36262 * 125.96047 * 359.69188 * 19 18 17 21 21 C 1.40787 * 106.72639 * 179.97438 * 20 19 18 22 22 C 1.34827 * 107.07133 * 359.97438 * 21 20 19 23 23 O 1.34272 * 108.72183 * 0.24587 * 22 21 20 24 24 S 1.76175 * 109.03120 * 359.57279 * 18 17 16 25 25 H 1.09000 * 109.46716 * 174.90229 * 1 2 3 26 26 H 1.09002 * 109.46884 * 294.90309 * 1 2 3 27 27 H 1.08998 * 109.47137 * 54.90314 * 1 2 3 28 28 H 1.08994 * 109.46992 * 239.99865 * 2 1 3 29 29 H 1.09001 * 109.46695 * 119.99980 * 2 1 3 30 30 H 0.96995 * 119.99707 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00217 * 81.91797 * 13 3 2 32 32 H 1.09000 * 109.47269 * 54.80566 * 14 13 3 33 33 H 1.08997 * 109.47429 * 294.79999 * 14 13 3 34 34 H 1.08006 * 122.06287 * 359.97438 * 16 15 14 35 35 H 1.08002 * 126.63905 * 0.03024 * 20 19 18 36 36 H 1.07992 * 126.46256 * 180.02562 * 21 20 19 37 37 H 1.07995 * 125.63283 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5433 1.4438 -0.1052 6 1 4.1390 1.8918 0.6765 7 6 4.1584 0.8731 -1.1993 8 7 3.4330 0.3280 -2.1514 9 14 6.0218 0.8741 -1.3293 10 1 6.5630 -0.3551 -0.6959 11 1 6.4181 0.9093 -2.7600 12 1 6.5658 2.0691 -0.6356 13 7 1.6359 2.1047 1.2474 14 6 1.5392 3.5590 1.0639 15 6 1.0013 4.1895 2.3226 16 6 1.7318 4.6312 3.3514 17 7 1.0581 5.1527 4.3507 18 6 -0.2419 5.1764 4.2396 19 6 -1.1751 5.7115 5.2429 20 6 -0.8326 6.2588 6.4428 21 6 -2.0334 6.6352 7.0741 22 6 -3.0396 6.3046 6.2398 23 8 -2.5184 5.7426 5.1373 24 16 -0.6990 4.4712 2.6912 25 1 -0.3633 -1.0236 -0.0913 26 1 -0.3633 0.4327 0.9321 27 1 -0.3633 0.5909 -0.8408 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8657 -0.0732 -2.9212 31 1 2.2686 1.8764 1.9995 32 1 0.8681 3.7766 0.2331 33 1 2.5277 3.9646 0.8484 34 1 2.8099 4.5663 3.3588 35 1 0.1668 6.3810 6.8337 36 1 -2.1301 7.1015 8.0433 37 1 -4.0912 6.4615 6.4291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194486415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:37 Heat of formation + Delta-G solvation = 38.700440 kcal Electronic energy + Delta-G solvation = -19908.064962 eV Core-core repulsion = 16778.081044 eV Total energy + Delta-G solvation = -3129.983918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.53506 -40.54823 -38.10767 -34.96851 -34.08577 -33.40997 -32.13541 -30.23741 -28.23389 -26.69515 -25.05865 -24.05338 -22.83670 -22.44075 -21.45858 -20.42264 -19.16362 -18.64225 -18.06805 -17.21769 -16.83615 -16.47740 -16.12049 -15.65886 -15.24480 -15.13599 -14.84899 -14.40123 -13.95745 -13.87583 -13.81172 -13.55503 -13.29781 -13.11187 -12.99859 -12.85028 -12.57393 -12.27457 -12.04986 -11.54386 -11.52255 -11.10483 -11.03958 -10.81409 -10.60915 -10.47273 -10.27458 -9.19464 -8.95864 -8.06923 -6.28346 -0.78369 0.16162 0.66238 0.78578 1.39305 1.41675 1.49678 1.57036 1.60463 1.98968 2.40308 3.14357 3.35952 3.64356 3.86930 4.03236 4.04830 4.15867 4.22013 4.58264 4.69976 4.73407 4.77352 4.77720 4.91930 4.97708 5.02596 5.09787 5.16114 5.40438 5.49732 5.50505 5.60656 5.74905 5.98700 6.07085 6.15044 6.31864 6.55829 6.72393 6.96672 7.43302 8.90608 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.003210 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.107362 B = 8720.808992 C = 9382.024518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.224 3.776 4 H 0.005 0.995 5 C -0.560 4.560 6 H 0.055 0.945 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.676 5.676 14 C 0.144 3.856 15 C -0.189 4.189 16 C 0.032 3.968 17 N -0.466 5.466 18 C 0.115 3.885 19 C 0.003 3.997 20 C -0.140 4.140 21 C -0.223 4.223 22 C -0.003 4.003 23 O -0.184 6.184 24 S 0.136 5.864 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.334 0.666 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.190 0.810 35 H 0.159 0.841 36 H 0.186 0.814 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.856 11.797 15.413 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.599 4.599 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.306 5.306 14 C 0.012 3.988 15 C -0.311 4.311 16 C -0.120 4.120 17 N -0.181 5.181 18 C -0.158 4.158 19 C -0.050 4.050 20 C -0.164 4.164 21 C -0.242 4.242 22 C -0.072 4.072 23 O -0.080 6.080 24 S 0.393 5.607 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.207 0.793 35 H 0.177 0.823 36 H 0.203 0.797 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -13.378 11.476 14.727 22.968 hybrid contribution 3.139 -0.035 -0.459 3.173 sum -10.239 11.440 14.267 20.959 Atomic orbital electron populations 1.21556 0.96531 0.99589 1.00519 1.21367 0.94260 0.98329 1.00145 1.18951 0.91781 0.91469 0.86267 0.97687 1.22163 0.93802 1.38053 1.05918 0.92726 1.25644 1.02050 0.94738 0.95448 1.70001 1.36479 1.38524 1.09940 0.85684 0.81125 0.78485 0.77082 1.20334 1.21117 1.19464 1.60872 1.55318 1.05677 1.08739 1.20068 0.98948 0.89036 0.90742 1.26013 0.95274 1.07112 1.02693 1.21721 1.02268 0.99875 0.88145 1.66510 1.04155 1.18472 1.28985 1.24164 0.91720 1.03812 0.96113 1.18662 0.80752 1.09515 0.96042 1.22187 1.01579 0.99874 0.92786 1.22213 0.90716 1.07555 1.03680 1.25270 1.01669 0.96938 0.83312 1.84069 1.18555 1.64102 1.41313 1.84966 1.06956 1.54939 1.13822 0.93746 0.92736 0.94900 0.91880 0.95338 0.92863 0.84969 0.91071 0.93091 0.79321 0.82315 0.79710 0.72920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.73 71.98 0.70 -4.30 16 2 C -0.10 -4.84 5.45 30.60 0.17 -4.67 16 3 C 0.22 10.79 1.98 44.17 0.09 10.88 16 4 H 0.01 0.28 7.70 -2.39 -0.02 0.26 16 5 C -0.56 -29.29 8.47 25.60 0.22 -29.07 16 6 H 0.05 2.79 7.73 -2.91 -0.02 2.77 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -51.06 11.30 21.45 0.24 -50.82 16 9 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 N -0.68 -27.31 5.72 -499.46 -2.86 -30.17 16 14 C 0.14 5.16 6.03 85.56 0.52 5.68 16 15 C -0.19 -6.00 6.14 24.65 0.15 -5.85 16 16 C 0.03 0.97 11.14 83.73 0.93 1.91 16 17 N -0.47 -14.37 10.52 -190.42 -2.00 -16.38 16 18 C 0.11 3.38 7.46 87.22 0.65 4.03 16 19 C 0.00 0.08 7.22 24.14 0.17 0.25 16 20 C -0.14 -2.94 10.80 22.43 0.24 -2.70 16 21 C -0.22 -3.12 10.88 22.11 0.24 -2.88 16 22 C 0.00 -0.04 12.08 67.04 0.81 0.77 16 23 O -0.18 -4.03 10.67 -6.90 -0.07 -4.11 16 24 S 0.14 3.99 23.42 -56.49 -1.32 2.67 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 26 H 0.05 2.08 7.88 -2.39 -0.02 2.07 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 3.37 5.97 -2.39 -0.01 3.35 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.33 13.35 8.45 -89.69 -0.76 12.60 16 32 H 0.07 2.61 7.92 -2.39 -0.02 2.59 16 33 H 0.05 1.89 8.11 -2.39 -0.02 1.87 16 34 H 0.19 5.07 8.06 -2.91 -0.02 5.04 16 35 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.25 0.63 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -61.72 333.90 1.68 -60.04 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.33 Total: 18.59 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 5.34 Total: -24.36 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -4.62 Total: -97.36 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.07 Total: -4.11 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.32 Total: 2.67 kcal Total: -61.72 1.68 -60.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194486415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.740 kcal (2) G-P(sol) polarization free energy of solvation -61.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds