Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39722 * 120.00023 * 260.58798 * 3 2 1 5 5 C 1.37660 * 120.00735 * 180.02562 * 4 3 2 6 6 C 1.39744 * 119.99788 * 359.97438 * 5 4 3 7 7 C 1.47695 * 120.00624 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00362 * 26.53259 * 7 6 5 9 9 N 1.34781 * 120.00039 * 206.54337 * 7 6 5 10 10 C 1.36813 * 120.00051 * 183.32727 * 9 7 6 11 11 H 1.08008 * 120.00027 * 225.20327 * 10 9 7 12 12 C 1.39047 * 120.00244 * 45.19794 * 10 9 7 13 13 N 1.31329 * 120.00068 * 23.91062 * 12 10 9 14 14 Si 1.86808 * 120.00267 * 203.90774 * 12 10 9 15 15 H 1.48498 * 109.46789 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46895 * 119.99905 * 14 12 10 17 17 H 1.48487 * 109.47336 * 240.00269 * 14 12 10 18 18 C 1.39708 * 119.99967 * 3.31922 * 9 7 6 19 19 C 1.38982 * 120.07487 * 50.32047 * 18 9 7 20 20 C 1.38086 * 119.91344 * 179.78803 * 19 18 9 21 21 C 1.38313 * 120.07964 * 0.46992 * 20 19 18 22 22 C 1.38309 * 120.15838 * 359.78584 * 21 20 19 23 23 C 1.38076 * 120.08526 * 359.97438 * 22 21 20 24 24 C 1.39752 * 119.99356 * 0.24570 * 6 5 4 25 25 C 1.37671 * 119.99403 * 359.53959 * 24 6 5 26 26 H 1.08006 * 119.99852 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.00312 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00391 * 184.91116 * 13 12 10 29 29 H 1.07992 * 120.04593 * 0.02562 * 19 18 9 30 30 H 1.07998 * 119.95527 * 180.25483 * 20 19 18 31 31 H 1.08002 * 119.91696 * 179.76715 * 21 20 19 32 32 H 1.08008 * 119.95532 * 179.97438 * 22 21 20 33 33 H 1.08000 * 120.04037 * 179.97438 * 23 22 21 34 34 H 1.07997 * 119.99897 * 179.72834 * 24 6 5 35 35 H 1.08001 * 119.99303 * 180.18534 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2665 0.1988 1.1937 5 6 4.6431 0.2000 1.1938 6 6 5.3420 0.0024 0.0000 7 6 6.8190 0.0042 -0.0003 8 8 7.4275 -0.3046 1.0061 9 7 7.4923 0.3483 -1.1160 10 6 8.8588 0.2846 -1.1374 11 1 9.4309 1.0991 -1.5565 12 6 9.5110 -0.8289 -0.6194 13 7 8.8856 -1.9814 -0.5465 14 14 11.2770 -0.6854 -0.0273 15 1 11.7505 0.7093 -0.2159 16 1 11.3466 -1.0409 1.4128 17 1 12.1374 -1.6105 -0.8076 18 6 6.7948 0.7700 -2.2507 19 6 5.8282 1.7630 -2.1450 20 6 5.1440 2.1804 -3.2695 21 6 5.4127 1.6046 -4.4980 22 6 6.3702 0.6125 -4.6058 23 6 7.0619 0.1935 -3.4867 24 6 4.6433 -0.1912 -1.1948 25 6 3.2666 -0.1968 -1.1938 26 1 2.7264 0.3520 2.1164 27 1 5.1830 0.3536 2.1165 28 1 9.3146 -2.7399 -0.1205 29 1 5.6152 2.2104 -1.1855 30 1 4.3956 2.9549 -3.1888 31 1 4.8733 1.9304 -5.3751 32 1 6.5772 0.1648 -5.5668 33 1 7.8092 -0.5816 -3.5717 34 1 5.1834 -0.3396 -2.1182 35 1 2.7267 -0.3494 -2.1166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194953201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = 75.102251 kcal Electronic energy + Delta-G solvation = -22489.440403 eV Core-core repulsion = 19225.591035 eV Total energy + Delta-G solvation = -3263.849368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46432 -38.53964 -37.61286 -36.22797 -34.50815 -32.53000 -31.11296 -30.92490 -30.16651 -28.77943 -25.81581 -23.90816 -22.59480 -22.03889 -21.71621 -19.90486 -18.79668 -17.52520 -17.33481 -15.70165 -15.31226 -15.23964 -14.67425 -14.48237 -14.27765 -13.94413 -13.86908 -13.66037 -13.43992 -13.17445 -12.87717 -12.81381 -12.62428 -12.33498 -11.93891 -11.64987 -11.57268 -11.14603 -10.97862 -10.91486 -10.77511 -10.55111 -10.36465 -9.23042 -8.99582 -8.78154 -8.63289 -8.50885 -8.18516 -7.20205 -6.48034 -4.20459 0.71683 1.48818 1.84571 1.98705 2.68796 2.90494 3.18274 3.28649 3.30322 3.76148 3.94586 4.04495 4.24920 4.42726 4.54386 4.99755 5.01435 5.08147 5.26791 5.40301 5.45221 5.54996 5.62244 5.68179 5.87956 5.95071 6.12221 6.12717 6.27514 6.43640 6.45995 6.55677 6.67613 6.91933 6.95287 7.03616 7.13857 7.33610 7.46577 7.50165 8.00081 8.61654 8.75648 9.23248 9.77231 10.58371 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.006221 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.521148 B = 4499.535807 C = 5813.743832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.265 3.735 3 C -0.035 4.035 4 C -0.081 4.081 5 C -0.081 4.081 6 C -0.073 4.073 7 C 0.519 3.481 8 O -0.516 6.516 9 N -0.393 5.393 10 C -0.352 4.352 11 H 0.090 0.910 12 C 0.081 3.919 13 N -0.824 5.824 14 Si 0.914 3.086 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.283 1.283 18 C 0.165 3.835 19 C -0.155 4.155 20 C -0.104 4.104 21 C -0.162 4.162 22 C -0.105 4.105 23 C -0.135 4.135 24 C -0.089 4.089 25 C -0.079 4.079 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.272 0.728 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.149 0.851 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 4.424 -3.952 8.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.049 4.049 3 C -0.039 4.039 4 C -0.102 4.102 5 C -0.100 4.100 6 C -0.077 4.077 7 C 0.309 3.691 8 O -0.393 6.393 9 N -0.106 5.106 10 C -0.477 4.477 11 H 0.108 0.892 12 C -0.132 4.132 13 N -0.456 5.456 14 Si 0.739 3.261 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.209 1.209 18 C 0.070 3.930 19 C -0.176 4.176 20 C -0.122 4.122 21 C -0.181 4.181 22 C -0.123 4.123 23 C -0.155 4.155 24 C -0.108 4.108 25 C -0.099 4.099 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.167 0.833 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.904 4.002 -3.342 9.469 hybrid contribution 1.240 -0.127 0.233 1.268 sum -6.665 3.875 -3.109 8.313 Atomic orbital electron populations 1.81209 1.12168 1.09717 1.07938 1.25823 0.92732 0.93151 0.93238 1.16060 0.83910 1.08366 0.95562 1.20989 0.93950 0.98812 0.96400 1.21123 0.92914 0.97919 0.98047 1.20683 0.95446 0.97917 0.93698 1.18077 0.85266 0.82123 0.83646 1.90635 1.68963 1.47740 1.31979 1.40982 1.05899 1.57420 1.06251 1.19153 0.78564 1.03370 1.46659 0.89243 1.25323 0.99715 0.93286 0.94901 1.69870 1.40079 1.00240 1.35366 0.86127 0.82206 0.78665 0.79067 1.19073 1.20163 1.20875 1.18352 0.91660 0.93551 0.89421 1.21142 0.99561 0.97890 0.99003 1.20785 0.99505 0.99636 0.92307 1.20889 1.00462 0.99537 0.97191 1.20960 0.96285 0.97252 0.97852 1.21216 1.01841 1.00709 0.91742 1.21982 0.93596 0.96371 0.98820 1.21006 0.94009 0.98553 0.96372 0.85092 0.84277 0.91749 0.86539 0.86756 0.87054 0.86683 0.85183 0.83335 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.59 18.54 41.84 0.78 -5.82 16 2 C 0.27 3.60 15.32 -22.48 -0.34 3.25 16 3 C -0.04 -0.46 5.74 -106.86 -0.61 -1.07 16 4 C -0.08 -1.04 9.73 -39.24 -0.38 -1.42 16 5 C -0.08 -1.27 9.57 -39.23 -0.38 -1.65 16 6 C -0.07 -1.36 4.60 -104.91 -0.48 -1.84 16 7 C 0.52 12.20 6.57 -12.40 -0.08 12.12 16 8 O -0.52 -13.93 14.88 5.29 0.08 -13.85 16 9 N -0.39 -9.18 2.63 -60.03 -0.16 -9.34 16 10 C -0.35 -8.98 8.56 -15.03 -0.13 -9.11 16 11 H 0.09 2.24 7.94 -52.48 -0.42 1.82 16 12 C 0.08 2.09 4.20 -17.47 -0.07 2.02 16 13 N -0.82 -22.38 12.37 55.50 0.69 -21.70 16 14 Si 0.91 20.35 29.62 -169.99 -5.03 15.32 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.17 3.22 3.38 -83.72 -0.28 2.94 16 19 C -0.16 -2.57 6.12 -39.36 -0.24 -2.81 16 20 C -0.10 -1.44 10.02 -39.61 -0.40 -1.83 16 21 C -0.16 -2.15 10.04 -39.53 -0.40 -2.55 16 22 C -0.10 -1.53 10.04 -39.61 -0.40 -1.93 16 23 C -0.13 -2.45 8.86 -39.37 -0.35 -2.80 16 24 C -0.09 -1.46 6.58 -39.22 -0.26 -1.71 16 25 C -0.08 -1.06 9.73 -39.23 -0.38 -1.44 16 26 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 27 H 0.14 2.16 7.86 -52.49 -0.41 1.74 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.12 1.93 7.22 -52.49 -0.38 1.55 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.13 2.59 7.94 -52.49 -0.42 2.17 16 34 H 0.15 2.58 4.49 -52.49 -0.24 2.35 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -29.32 312.50 -7.24 -36.55 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.11 Total: 3.96 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -5.19 Total: -9.84 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 1.30 Total: -36.86 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.32 -7.24 -36.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194953201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.656 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds