Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39722 * 120.00023 * 260.58798 * 3 2 1 5 5 C 1.37660 * 120.00735 * 180.02562 * 4 3 2 6 6 C 1.39744 * 119.99788 * 359.97438 * 5 4 3 7 7 C 1.47695 * 120.00624 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00362 * 26.53259 * 7 6 5 9 9 N 1.34781 * 120.00039 * 206.54337 * 7 6 5 10 10 C 1.36813 * 120.00051 * 183.32727 * 9 7 6 11 11 H 1.08008 * 120.00027 * 225.20327 * 10 9 7 12 12 C 1.39047 * 120.00244 * 45.19794 * 10 9 7 13 13 N 1.31329 * 120.00068 * 23.91062 * 12 10 9 14 14 Si 1.86808 * 120.00267 * 203.90774 * 12 10 9 15 15 H 1.48498 * 109.46789 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46895 * 119.99905 * 14 12 10 17 17 H 1.48487 * 109.47336 * 240.00269 * 14 12 10 18 18 C 1.39708 * 119.99967 * 3.31922 * 9 7 6 19 19 C 1.38982 * 120.07487 * 50.32047 * 18 9 7 20 20 C 1.38086 * 119.91344 * 179.78803 * 19 18 9 21 21 C 1.38313 * 120.07964 * 0.46992 * 20 19 18 22 22 C 1.38309 * 120.15838 * 359.78584 * 21 20 19 23 23 C 1.38076 * 120.08526 * 359.97438 * 22 21 20 24 24 C 1.39752 * 119.99356 * 0.24570 * 6 5 4 25 25 C 1.37671 * 119.99403 * 359.53959 * 24 6 5 26 26 H 1.08006 * 119.99852 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.00312 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00391 * 184.91116 * 13 12 10 29 29 H 1.07992 * 120.04593 * 0.02562 * 19 18 9 30 30 H 1.07998 * 119.95527 * 180.25483 * 20 19 18 31 31 H 1.08002 * 119.91696 * 179.76715 * 21 20 19 32 32 H 1.08008 * 119.95532 * 179.97438 * 22 21 20 33 33 H 1.08000 * 120.04037 * 179.97438 * 23 22 21 34 34 H 1.07997 * 119.99897 * 179.72834 * 24 6 5 35 35 H 1.08001 * 119.99303 * 180.18534 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2665 0.1988 1.1937 5 6 4.6431 0.2000 1.1938 6 6 5.3420 0.0024 0.0000 7 6 6.8190 0.0042 -0.0003 8 8 7.4275 -0.3046 1.0061 9 7 7.4923 0.3483 -1.1160 10 6 8.8588 0.2846 -1.1374 11 1 9.4309 1.0991 -1.5565 12 6 9.5110 -0.8289 -0.6194 13 7 8.8856 -1.9814 -0.5465 14 14 11.2770 -0.6854 -0.0273 15 1 11.7505 0.7093 -0.2159 16 1 11.3466 -1.0409 1.4128 17 1 12.1374 -1.6105 -0.8076 18 6 6.7948 0.7700 -2.2507 19 6 5.8282 1.7630 -2.1450 20 6 5.1440 2.1804 -3.2695 21 6 5.4127 1.6046 -4.4980 22 6 6.3702 0.6125 -4.6058 23 6 7.0619 0.1935 -3.4867 24 6 4.6433 -0.1912 -1.1948 25 6 3.2666 -0.1968 -1.1938 26 1 2.7264 0.3520 2.1164 27 1 5.1830 0.3536 2.1165 28 1 9.3146 -2.7399 -0.1205 29 1 5.6152 2.2104 -1.1855 30 1 4.3956 2.9549 -3.1888 31 1 4.8733 1.9304 -5.3751 32 1 6.5772 0.1648 -5.5668 33 1 7.8092 -0.5816 -3.5717 34 1 5.1834 -0.3396 -2.1182 35 1 2.7267 -0.3494 -2.1166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194953201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = 59.795865 kcal Electronic energy + Delta-G solvation = -22490.104138 eV Core-core repulsion = 19225.591035 eV Total energy + Delta-G solvation = -3264.513103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89871 -39.77931 -39.13687 -37.41605 -36.17974 -34.25146 -32.49941 -32.13751 -31.40828 -30.18914 -27.49562 -25.39120 -23.82670 -23.34373 -23.00485 -21.45971 -19.96636 -19.19006 -18.80336 -17.06194 -16.94612 -16.63707 -16.06824 -15.86431 -15.67791 -15.38957 -15.10436 -14.93372 -14.73435 -14.57632 -14.26577 -14.10168 -13.82951 -13.68275 -13.51769 -13.07637 -12.91279 -12.84154 -12.75332 -12.27919 -12.06123 -11.97577 -11.85932 -10.99950 -10.50447 -10.23988 -10.08226 -9.93258 -9.46208 -8.77562 -8.38560 -6.16098 -0.51100 0.31544 0.58480 0.74308 1.34769 1.42966 1.51883 1.59270 1.69307 2.24283 2.42392 2.77478 2.88159 2.94592 3.04404 3.25559 3.83955 3.92904 3.93905 4.22427 4.29542 4.32423 4.45315 4.49764 4.69391 4.75581 4.86241 4.98538 5.04192 5.20892 5.25441 5.31993 5.38685 5.46390 5.70849 5.75434 5.80233 5.80745 6.06983 6.28142 6.41097 6.82337 6.96361 7.44421 8.02638 8.66675 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.006221 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.521148 B = 4499.535807 C = 5813.743832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.287 3.713 3 C -0.018 4.018 4 C -0.062 4.062 5 C -0.084 4.084 6 C -0.099 4.099 7 C 0.508 3.492 8 O -0.573 6.573 9 N -0.409 5.409 10 C -0.369 4.369 11 H 0.082 0.918 12 C 0.038 3.962 13 N -0.864 5.864 14 Si 0.967 3.033 15 H -0.258 1.258 16 H -0.288 1.288 17 H -0.270 1.270 18 C 0.134 3.866 19 C -0.151 4.151 20 C -0.093 4.093 21 C -0.138 4.138 22 C -0.100 4.100 23 C -0.152 4.152 24 C -0.090 4.090 25 C -0.063 4.063 26 H 0.165 0.835 27 H 0.133 0.867 28 H 0.268 0.732 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.142 0.858 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 6.046 -5.777 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.028 4.028 3 C -0.022 4.022 4 C -0.082 4.082 5 C -0.103 4.103 6 C -0.103 4.103 7 C 0.300 3.700 8 O -0.455 6.455 9 N -0.122 5.122 10 C -0.495 4.495 11 H 0.100 0.900 12 C -0.170 4.170 13 N -0.497 5.497 14 Si 0.791 3.209 15 H -0.181 1.181 16 H -0.214 1.214 17 H -0.195 1.195 18 C 0.041 3.959 19 C -0.171 4.171 20 C -0.112 4.112 21 C -0.157 4.157 22 C -0.118 4.118 23 C -0.173 4.173 24 C -0.109 4.109 25 C -0.083 4.083 26 H 0.183 0.817 27 H 0.151 0.849 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.072 5.659 -5.233 13.491 hybrid contribution 1.993 -0.514 0.672 2.165 sum -9.079 5.145 -4.561 11.389 Atomic orbital electron populations 1.81264 1.12802 1.10268 1.08633 1.25549 0.92244 0.92449 0.92531 1.16036 0.83701 1.07007 0.95437 1.21215 0.92491 0.96650 0.97826 1.21134 0.94137 0.98180 0.96885 1.20413 0.92625 1.01343 0.95925 1.18840 0.87505 0.80726 0.82967 1.90565 1.70686 1.50384 1.33834 1.41065 1.05552 1.57855 1.07756 1.19239 0.80395 1.02965 1.46880 0.90047 1.26050 1.02933 0.92995 0.95035 1.69951 1.41659 1.00764 1.37350 0.85314 0.78656 0.79143 0.77773 1.18124 1.21445 1.19545 1.18522 0.93727 0.95308 0.88388 1.21158 0.98929 0.96963 1.00091 1.21191 0.99085 0.99612 0.91294 1.21373 0.98699 0.97247 0.98350 1.21239 0.95662 0.97373 0.97531 1.21120 1.02309 1.00920 0.92908 1.21792 0.94626 0.96999 0.97448 1.21191 0.92582 0.96775 0.97777 0.81707 0.84899 0.92291 0.87022 0.83102 0.82789 0.84017 0.88514 0.84571 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.11 18.54 19.00 0.35 -11.75 16 2 C 0.29 6.58 15.32 88.33 1.35 7.94 16 3 C -0.02 -0.40 5.74 -21.32 -0.12 -0.53 16 4 C -0.06 -1.41 9.73 22.49 0.22 -1.19 16 5 C -0.08 -2.62 9.57 22.50 0.22 -2.41 16 6 C -0.10 -3.75 4.60 -20.05 -0.09 -3.85 16 7 C 0.51 25.42 6.57 86.74 0.57 25.99 16 8 O -0.57 -33.31 14.88 -4.00 -0.06 -33.37 16 9 N -0.41 -20.34 2.63 -462.08 -1.22 -21.55 16 10 C -0.37 -20.11 8.56 84.11 0.72 -19.39 16 11 H 0.08 4.37 7.94 -2.91 -0.02 4.34 16 12 C 0.04 2.11 4.20 84.96 0.36 2.47 16 13 N -0.86 -50.28 12.37 21.68 0.27 -50.01 16 14 Si 0.97 44.14 29.62 68.60 2.03 46.17 16 15 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 16 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 C 0.13 5.35 3.38 38.24 0.13 5.48 16 19 C -0.15 -4.82 6.12 22.41 0.14 -4.69 16 20 C -0.09 -2.19 10.02 22.25 0.22 -1.97 16 21 C -0.14 -2.99 10.04 22.30 0.22 -2.77 16 22 C -0.10 -2.66 10.04 22.25 0.22 -2.44 16 23 C -0.15 -5.65 8.86 22.41 0.20 -5.45 16 24 C -0.09 -2.85 6.58 22.50 0.15 -2.70 16 25 C -0.06 -1.48 9.73 22.49 0.22 -1.26 16 26 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 27 H 0.13 4.26 7.86 -2.91 -0.02 4.23 16 28 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.11 3.64 7.22 -2.91 -0.02 3.62 16 30 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.10 4.17 7.94 -2.91 -0.02 4.15 16 34 H 0.14 4.70 4.49 -2.91 -0.01 4.69 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -70.41 312.50 7.23 -63.19 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 1.13 Total: 14.10 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 4.72 Total: -6.76 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -0.60 Total: -83.32 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.06 Total: -33.37 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.41 7.23 -63.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194953201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.982 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds