Wall clock time and date at job start Tue Mar 31 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86794 * 120.00022 * 2 1 4 4 H 1.48504 * 109.46878 * 239.99491 * 3 2 1 5 5 H 1.48496 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47180 * 119.99828 * 3 2 1 7 7 C 1.40212 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00067 * 189.68077 * 7 2 1 9 9 C 1.40773 * 120.00206 * 9.67256 * 7 2 1 10 10 C 1.40759 * 120.34194 * 32.17065 * 9 7 2 11 11 C 1.36468 * 120.00600 * 180.27497 * 10 9 7 12 12 C 1.38928 * 120.73138 * 359.72670 * 11 10 9 13 13 C 1.38065 * 120.69717 * 359.97181 * 12 11 10 14 14 C 1.39389 * 119.96237 * 0.02807 * 13 12 11 15 15 C 1.47285 * 120.35782 * 180.02562 * 14 13 12 16 16 N 1.32220 * 126.58535 * 356.36665 * 15 14 13 17 17 C 1.34812 * 105.50242 * 179.97438 * 16 15 14 18 18 C 1.48445 * 126.28973 * 179.97438 * 17 16 15 19 19 C 1.39305 * 120.12072 * 359.97438 * 18 17 16 20 20 C 1.38021 * 119.88360 * 180.02562 * 19 18 17 21 21 C 1.38324 * 120.11637 * 359.97438 * 20 19 18 22 22 C 1.38318 * 120.23960 * 0.02562 * 21 20 19 23 23 C 1.38024 * 120.11835 * 0.02562 * 22 21 20 24 24 N 1.30919 * 107.41756 * 0.22888 * 17 16 15 25 25 O 1.21274 * 110.37654 * 359.59957 * 24 17 16 26 26 H 0.97000 * 119.99565 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99924 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.63311 * 179.74360 * 11 10 9 29 29 H 1.07998 * 119.65102 * 179.97438 * 12 11 10 30 30 H 1.08000 * 120.02380 * 180.02562 * 13 12 11 31 31 H 1.08003 * 120.06295 * 0.04286 * 19 18 17 32 32 H 1.08006 * 119.94368 * 180.25586 * 20 19 18 33 33 H 1.08002 * 119.87876 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.94006 * 179.97438 * 22 21 20 35 35 H 1.07993 * 120.06347 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0947 1.6962 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0078 -1.2143 0.0005 8 1 3.0763 -1.2210 0.1578 9 6 1.3189 -2.4248 -0.2037 10 6 0.1809 -2.4645 -1.0312 11 6 -0.4850 -3.6406 -1.2200 12 6 -0.0497 -4.8091 -0.6075 13 6 1.0665 -4.8054 0.2051 14 6 1.7686 -3.6202 0.4180 15 6 2.9609 -3.6064 1.2826 16 7 3.4438 -4.6238 1.9754 17 6 4.5332 -4.1440 2.6083 18 6 5.4282 -4.9047 3.5159 19 6 5.1749 -6.2483 3.7829 20 6 6.0100 -6.9508 4.6280 21 6 7.0971 -6.3232 5.2090 22 6 7.3533 -4.9893 4.9473 23 6 6.5240 -4.2772 4.1046 24 7 4.6535 -2.8824 2.2797 25 8 3.7668 -2.5579 1.5186 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1677 -1.5632 -1.5135 28 1 -1.3599 -3.6633 -1.8528 29 1 -0.5901 -5.7302 -0.7686 30 1 1.3956 -5.7202 0.6755 31 1 4.3268 -6.7395 3.3292 32 1 5.8169 -7.9936 4.8324 33 1 7.7478 -6.8765 5.8700 34 1 8.2032 -4.5040 5.4039 35 1 6.7245 -3.2357 3.9013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236232978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:18 Heat of formation + Delta-G solvation = 104.615206 kcal Electronic energy + Delta-G solvation = -21545.997692 eV Core-core repulsion = 18283.428102 eV Total energy + Delta-G solvation = -3262.569591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.39114 -39.01966 -37.81706 -34.97005 -33.96857 -32.62931 -30.94729 -30.67261 -29.79453 -29.01251 -25.73667 -24.16812 -23.51639 -22.13759 -21.62526 -20.87365 -19.95227 -17.86832 -17.17047 -17.03930 -16.14205 -15.72291 -15.24022 -15.16515 -14.55001 -14.12139 -13.72132 -13.42219 -13.39096 -12.97123 -12.85892 -12.48291 -12.05798 -11.81383 -11.49822 -11.35065 -11.27301 -11.12809 -11.07163 -10.91958 -10.68353 -10.28207 -9.87965 -9.82697 -9.77130 -9.49622 -8.94838 -8.51058 -7.69233 -7.52683 -7.08013 -4.73966 0.98996 1.40829 1.67817 2.62813 2.80772 2.95082 2.99549 3.09093 3.40762 3.74839 3.87037 3.98972 4.12608 4.39135 4.69923 4.93893 5.09167 5.10484 5.35046 5.45460 5.58212 5.76124 5.97869 6.03963 6.06637 6.19327 6.30507 6.43213 6.46888 6.56758 6.70433 6.78399 6.80331 6.87026 6.94378 7.04836 7.25437 7.54932 7.69163 7.79530 7.91281 8.28117 8.46360 8.55296 9.09188 9.83124 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.004605 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.549604 B = 6078.802512 C = 7564.025377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.076 3.924 3 Si 0.916 3.084 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.433 4.433 8 H 0.097 0.903 9 C 0.141 3.859 10 C -0.145 4.145 11 C -0.087 4.087 12 C -0.238 4.238 13 C -0.028 4.028 14 C -0.181 4.181 15 C 0.289 3.711 16 N -0.525 5.525 17 C 0.196 3.804 18 C -0.001 4.001 19 C -0.080 4.080 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.090 4.090 24 N -0.412 5.412 25 O 0.083 5.917 26 H 0.289 0.711 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.733 -5.609 4.578 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.461 4.461 8 H 0.114 0.886 9 C 0.136 3.864 10 C -0.164 4.164 11 C -0.107 4.107 12 C -0.258 4.258 13 C -0.048 4.048 14 C -0.186 4.186 15 C 0.080 3.920 16 N -0.260 5.260 17 C -0.074 4.074 18 C -0.002 4.002 19 C -0.100 4.100 20 C -0.143 4.143 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.110 4.110 24 N -0.126 5.126 25 O 0.027 5.973 26 H 0.101 0.899 27 H 0.141 0.859 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.166 -5.336 5.034 10.255 hybrid contribution 0.076 0.838 -0.025 0.842 sum 7.242 -4.498 5.010 9.888 Atomic orbital electron populations 1.69696 1.07809 1.30475 1.31759 1.26071 0.94897 1.01925 0.91663 0.86188 0.80152 0.78959 0.80770 1.18258 1.19936 1.18261 1.19977 0.96693 0.90242 1.39215 0.88569 1.17571 0.90972 0.90665 0.87185 1.21069 0.97849 0.97014 1.00480 1.20641 0.98126 0.93391 0.98495 1.20361 1.00870 0.97557 1.06998 1.20581 0.93516 0.95374 0.95311 1.17229 0.96676 0.96830 1.07892 1.26267 0.92763 0.79755 0.93172 1.72195 1.10605 1.28139 1.15056 1.23610 0.94941 0.88965 0.99902 1.17460 0.93754 0.92880 0.96140 1.21264 0.99318 0.92798 0.96642 1.21090 0.95351 1.00062 0.97828 1.21239 0.97513 0.94944 0.99586 1.21038 0.99758 0.94584 0.98914 1.21220 0.93489 1.00400 0.95907 1.74720 1.11234 1.15353 1.11263 1.85561 1.28465 1.36935 1.46316 0.89932 0.85857 0.88585 0.88341 0.87554 0.84699 0.85584 0.85955 0.85668 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.14 11.02 55.56 0.61 -17.53 16 2 C 0.08 1.76 5.25 -17.30 -0.09 1.67 16 3 Si 0.92 17.68 29.57 -169.99 -5.03 12.65 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.43 -10.68 8.05 -37.88 -0.30 -10.98 16 8 H 0.10 2.37 5.66 -52.48 -0.30 2.07 16 9 C 0.14 3.48 5.53 -106.53 -0.59 2.89 16 10 C -0.15 -3.38 8.58 -39.27 -0.34 -3.72 16 11 C -0.09 -1.83 9.96 -39.96 -0.40 -2.23 16 12 C -0.24 -4.88 10.03 -39.39 -0.39 -5.27 16 13 C -0.03 -0.61 9.70 -39.22 -0.38 -0.99 16 14 C -0.18 -4.33 5.93 -104.33 -0.62 -4.95 16 15 C 0.29 6.87 7.85 -13.93 -0.11 6.76 16 16 N -0.52 -11.79 10.96 -10.24 -0.11 -11.90 16 17 C 0.20 4.16 7.79 -156.34 -1.22 2.94 16 18 C 0.00 -0.01 5.88 -104.89 -0.62 -0.63 16 19 C -0.08 -1.21 9.70 -39.26 -0.38 -1.59 16 20 C -0.13 -1.48 10.03 -39.63 -0.40 -1.88 16 21 C -0.11 -1.23 10.04 -39.52 -0.40 -1.63 16 22 C -0.12 -1.48 10.03 -39.63 -0.40 -1.88 16 23 C -0.09 -1.35 9.69 -39.26 -0.38 -1.73 16 24 N -0.41 -9.27 11.84 31.26 0.37 -8.90 16 25 O 0.08 2.00 8.36 16.31 0.14 2.13 16 26 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 27 H 0.12 2.90 6.45 -52.49 -0.34 2.56 16 28 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.11 2.17 7.88 -52.49 -0.41 1.76 16 31 H 0.14 2.04 7.87 -52.48 -0.41 1.63 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.94 7.86 -52.49 -0.41 1.52 16 LS Contribution 311.41 15.07 4.69 4.69 Total: -1.00 -26.56 311.41 -9.46 -36.03 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.12 Total: 6.04 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -7.01 Total: -23.22 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.87 Total: -38.32 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: 0.14 Total: 2.13 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.56 -9.46 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236232978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.640 kcal (2) G-P(sol) polarization free energy of solvation -26.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds