Wall clock time and date at job start Tue Mar 31 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86794 * 120.00022 * 2 1 4 4 H 1.48504 * 109.46878 * 239.99491 * 3 2 1 5 5 H 1.48496 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47180 * 119.99828 * 3 2 1 7 7 C 1.40212 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00067 * 189.68077 * 7 2 1 9 9 C 1.40773 * 120.00206 * 9.67256 * 7 2 1 10 10 C 1.40759 * 120.34194 * 32.17065 * 9 7 2 11 11 C 1.36468 * 120.00600 * 180.27497 * 10 9 7 12 12 C 1.38928 * 120.73138 * 359.72670 * 11 10 9 13 13 C 1.38065 * 120.69717 * 359.97181 * 12 11 10 14 14 C 1.39389 * 119.96237 * 0.02807 * 13 12 11 15 15 C 1.47285 * 120.35782 * 180.02562 * 14 13 12 16 16 N 1.32220 * 126.58535 * 356.36665 * 15 14 13 17 17 C 1.34812 * 105.50242 * 179.97438 * 16 15 14 18 18 C 1.48445 * 126.28973 * 179.97438 * 17 16 15 19 19 C 1.39305 * 120.12072 * 359.97438 * 18 17 16 20 20 C 1.38021 * 119.88360 * 180.02562 * 19 18 17 21 21 C 1.38324 * 120.11637 * 359.97438 * 20 19 18 22 22 C 1.38318 * 120.23960 * 0.02562 * 21 20 19 23 23 C 1.38024 * 120.11835 * 0.02562 * 22 21 20 24 24 N 1.30919 * 107.41756 * 0.22888 * 17 16 15 25 25 O 1.21274 * 110.37654 * 359.59957 * 24 17 16 26 26 H 0.97000 * 119.99565 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99924 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.63311 * 179.74360 * 11 10 9 29 29 H 1.07998 * 119.65102 * 179.97438 * 12 11 10 30 30 H 1.08000 * 120.02380 * 180.02562 * 13 12 11 31 31 H 1.08003 * 120.06295 * 0.04286 * 19 18 17 32 32 H 1.08006 * 119.94368 * 180.25586 * 20 19 18 33 33 H 1.08002 * 119.87876 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.94006 * 179.97438 * 22 21 20 35 35 H 1.07993 * 120.06347 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0947 1.6962 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0078 -1.2143 0.0005 8 1 3.0763 -1.2210 0.1578 9 6 1.3189 -2.4248 -0.2037 10 6 0.1809 -2.4645 -1.0312 11 6 -0.4850 -3.6406 -1.2200 12 6 -0.0497 -4.8091 -0.6075 13 6 1.0665 -4.8054 0.2051 14 6 1.7686 -3.6202 0.4180 15 6 2.9609 -3.6064 1.2826 16 7 3.4438 -4.6238 1.9754 17 6 4.5332 -4.1440 2.6083 18 6 5.4282 -4.9047 3.5159 19 6 5.1749 -6.2483 3.7829 20 6 6.0100 -6.9508 4.6280 21 6 7.0971 -6.3232 5.2090 22 6 7.3533 -4.9893 4.9473 23 6 6.5240 -4.2772 4.1046 24 7 4.6535 -2.8824 2.2797 25 8 3.7668 -2.5579 1.5186 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1677 -1.5632 -1.5135 28 1 -1.3599 -3.6633 -1.8528 29 1 -0.5901 -5.7302 -0.7686 30 1 1.3956 -5.7202 0.6755 31 1 4.3268 -6.7395 3.3292 32 1 5.8169 -7.9936 4.8324 33 1 7.7478 -6.8765 5.8700 34 1 8.2032 -4.5040 5.4039 35 1 6.7245 -3.2357 3.9013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236232978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:18 Heat of formation + Delta-G solvation = 91.522264 kcal Electronic energy + Delta-G solvation = -21546.565445 eV Core-core repulsion = 18283.428102 eV Total energy + Delta-G solvation = -3263.137343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.10790 -40.08835 -39.56217 -36.62471 -35.71191 -34.24298 -32.12417 -31.96049 -31.43996 -30.66475 -27.51335 -25.63114 -25.07184 -23.32312 -23.14440 -22.55723 -21.48096 -19.59505 -18.79974 -18.60511 -17.44892 -17.41316 -16.77954 -16.44659 -15.94748 -15.55431 -15.34570 -14.71075 -14.49621 -14.39313 -14.17291 -14.14267 -13.82841 -13.49199 -13.17388 -12.90155 -12.81828 -12.57800 -12.33252 -12.28184 -12.18997 -11.88903 -11.59160 -11.51214 -11.46951 -11.21640 -9.96703 -9.75850 -9.46137 -9.26782 -8.81639 -6.56982 -0.32335 0.00810 0.39357 0.93882 1.21634 1.35546 1.45880 1.49771 1.74639 2.11590 2.14848 2.62630 2.66451 2.85635 3.17427 3.55695 3.96531 4.03241 4.13788 4.28031 4.39105 4.46960 4.53027 4.59068 4.68709 4.84655 4.96305 4.99595 5.03668 5.07976 5.11930 5.27471 5.46292 5.48903 5.49152 5.53440 5.82513 5.90918 5.95877 6.04545 6.15649 6.48772 6.66847 6.77108 7.33790 8.12355 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.004605 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.549604 B = 6078.802512 C = 7564.025377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.045 3.955 3 Si 0.976 3.024 4 H -0.254 1.254 5 H -0.255 1.255 6 H -0.270 1.270 7 C -0.464 4.464 8 H 0.084 0.916 9 C 0.118 3.882 10 C -0.166 4.166 11 C -0.081 4.081 12 C -0.228 4.228 13 C -0.037 4.037 14 C -0.202 4.202 15 C 0.275 3.725 16 N -0.530 5.530 17 C 0.204 3.796 18 C -0.044 4.044 19 C -0.092 4.092 20 C -0.118 4.118 21 C -0.095 4.095 22 C -0.119 4.119 23 C -0.102 4.102 24 N -0.432 5.432 25 O 0.059 5.941 26 H 0.299 0.701 27 H 0.116 0.884 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 -7.363 5.837 12.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.175 4.175 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.179 1.179 6 H -0.195 1.195 7 C -0.493 4.493 8 H 0.102 0.898 9 C 0.113 3.887 10 C -0.185 4.185 11 C -0.099 4.099 12 C -0.247 4.247 13 C -0.056 4.056 14 C -0.208 4.208 15 C 0.066 3.934 16 N -0.266 5.266 17 C -0.066 4.066 18 C -0.046 4.046 19 C -0.112 4.112 20 C -0.136 4.136 21 C -0.113 4.113 22 C -0.137 4.137 23 C -0.122 4.122 24 N -0.150 5.150 25 O 0.008 5.992 26 H 0.110 0.890 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.176 0.824 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.036 -7.084 6.263 12.409 hybrid contribution -0.144 1.161 -0.309 1.210 sum 7.891 -5.923 5.954 11.524 Atomic orbital electron populations 1.69704 1.08655 1.31722 1.32022 1.26722 0.95610 1.04190 0.90945 0.85323 0.79108 0.75803 0.80174 1.17786 1.17902 1.19463 1.20083 0.96420 0.91506 1.41259 0.89828 1.17878 0.91900 0.91107 0.87814 1.21098 0.98332 0.97919 1.01155 1.21016 0.98445 0.92521 0.97967 1.20789 0.99939 0.98815 1.05147 1.20821 0.93965 0.95047 0.95814 1.17557 0.97208 0.97637 1.08354 1.26507 0.93086 0.80191 0.93598 1.72184 1.11249 1.27893 1.15284 1.24396 0.94494 0.88699 0.99041 1.17686 0.94988 0.94028 0.97923 1.21335 1.00037 0.92019 0.97774 1.21491 0.94563 1.01432 0.96126 1.21786 0.96817 0.94438 0.98266 1.21439 0.99656 0.95149 0.97414 1.21298 0.93667 1.00344 0.96899 1.74682 1.11627 1.16360 1.12346 1.85533 1.29060 1.37436 1.47174 0.89000 0.86645 0.85184 0.84620 0.86455 0.85749 0.82189 0.81524 0.82366 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.27 11.02 21.87 0.24 -38.02 16 2 C 0.04 2.13 5.25 85.34 0.45 2.58 16 3 Si 0.98 37.23 29.57 68.60 2.03 39.26 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 6 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.46 -24.21 8.05 23.37 0.19 -24.02 16 8 H 0.08 4.45 5.66 -2.91 -0.02 4.43 16 9 C 0.12 6.08 5.53 -21.10 -0.12 5.96 16 10 C -0.17 -7.89 8.58 22.47 0.19 -7.70 16 11 C -0.08 -3.28 9.96 22.02 0.22 -3.06 16 12 C -0.23 -8.93 10.03 22.39 0.22 -8.70 16 13 C -0.04 -1.61 9.70 22.51 0.22 -1.39 16 14 C -0.20 -10.09 5.93 -19.68 -0.12 -10.21 16 15 C 0.27 13.83 7.85 87.09 0.68 14.52 16 16 N -0.53 -24.94 10.96 -302.02 -3.31 -28.25 16 17 C 0.20 9.08 7.79 137.39 1.07 10.15 16 18 C -0.04 -1.57 5.88 -20.04 -0.12 -1.69 16 19 C -0.09 -2.68 9.70 22.48 0.22 -2.47 16 20 C -0.12 -2.39 10.03 22.24 0.22 -2.16 16 21 C -0.09 -1.60 10.04 22.31 0.22 -1.38 16 22 C -0.12 -2.43 10.03 22.24 0.22 -2.20 16 23 C -0.10 -3.01 9.69 22.48 0.22 -2.80 16 24 N -0.43 -20.68 11.84 -57.37 -0.68 -21.36 16 25 O 0.06 3.01 8.36 68.45 0.57 3.58 16 26 H 0.30 12.80 8.29 -92.71 -0.77 12.04 16 27 H 0.12 5.59 6.45 -2.91 -0.02 5.57 16 28 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.12 4.78 7.88 -2.91 -0.02 4.76 16 31 H 0.12 3.80 7.87 -2.91 -0.02 3.77 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.12 3.65 7.86 -2.91 -0.02 3.63 16 Total: -1.00 -61.70 311.41 3.98 -57.72 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.13 Total: 21.64 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 4.00 Total: -34.57 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -3.75 Total: -87.63 kcal Atomic # 8 Polarization: 3.01 SS G_CDS: 0.57 Total: 3.58 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -61.70 3.98 -57.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236232978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.239 kcal (2) G-P(sol) polarization free energy of solvation -61.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds