Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99986 * 2 1 4 4 H 1.48502 * 109.47234 * 266.74386 * 3 2 1 5 5 H 1.48496 * 109.47548 * 26.74531 * 3 2 1 6 6 H 1.48509 * 109.47150 * 146.74647 * 3 2 1 7 7 C 1.38816 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99966 * 345.73498 * 7 2 1 9 9 N 1.36937 * 119.99781 * 165.73546 * 7 2 1 10 10 C 1.46967 * 120.59562 * 321.68144 * 9 7 2 11 11 C 1.53370 * 108.63645 * 235.20585 * 10 9 7 12 12 N 1.46970 * 108.63252 * 310.57637 * 11 10 9 13 13 C 1.34777 * 120.58870 * 235.20372 * 12 11 10 14 14 O 1.21781 * 120.00306 * 354.51080 * 13 12 11 15 15 C 1.41481 * 119.99422 * 174.51092 * 13 12 11 16 16 C 1.35654 * 119.99485 * 199.35369 * 15 13 12 17 17 C 1.41582 * 120.00163 * 24.50837 * 16 15 13 18 18 C 1.37048 * 125.47339 * 211.77550 * 17 16 15 19 19 C 1.37430 * 113.22360 * 179.97438 * 18 17 16 20 20 C 1.33869 * 115.12684 * 359.97438 * 19 18 17 21 21 S 1.70602 * 111.01446 * 0.02562 * 20 19 18 22 22 C 1.46965 * 118.81513 * 55.47331 * 12 11 10 23 23 C 1.46963 * 120.59366 * 141.65261 * 9 7 2 24 24 H 0.97000 * 119.99511 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.61430 * 115.45711 * 10 9 7 26 26 H 1.09000 * 109.74754 * 355.03238 * 10 9 7 27 27 H 1.08993 * 109.61169 * 190.82945 * 11 10 9 28 28 H 1.08997 * 109.60995 * 70.31617 * 11 10 9 29 29 H 1.07993 * 120.00020 * 19.35481 * 15 13 12 30 30 H 1.07998 * 119.99798 * 204.50275 * 16 15 13 31 31 H 1.07999 * 123.38706 * 0.02562 * 18 17 16 32 32 H 1.07997 * 122.43975 * 180.02562 * 19 18 17 33 33 H 1.08000 * 124.48795 * 180.26451 * 20 19 18 34 34 H 1.08996 * 109.60549 * 64.26558 * 22 12 11 35 35 H 1.08994 * 109.61286 * 184.78215 * 22 12 11 36 36 H 1.08997 * 109.61337 * 244.54081 * 23 9 7 37 37 H 1.09000 * 109.60650 * 5.05747 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5666 2.0067 -1.3978 5 1 1.4150 2.6716 0.6300 6 1 3.5117 1.4610 0.7678 7 6 2.0102 -1.2022 -0.0005 8 1 1.4951 -2.1231 0.2295 9 7 3.3479 -1.2204 -0.2928 10 6 3.8980 -0.3417 -1.3345 11 6 4.6491 -1.2039 -2.3566 12 7 5.5604 -2.1022 -1.6337 13 6 6.8770 -2.1200 -1.9214 14 8 7.3059 -1.4628 -2.8526 15 6 7.7609 -2.9024 -1.1414 16 6 9.0914 -2.6386 -1.1543 17 6 9.5529 -1.3421 -1.4874 18 6 10.7333 -1.0569 -2.1225 19 6 10.9301 0.2885 -2.3220 20 6 9.9497 1.0796 -1.8692 21 16 8.7031 0.1606 -1.1537 22 6 5.0095 -2.9849 -0.5958 23 6 4.2593 -2.1185 0.4301 24 1 -0.4849 0.8401 0.0004 25 1 4.5857 0.3739 -0.8838 26 1 3.0881 0.1924 -1.8313 27 1 5.2223 -0.5622 -3.0256 28 1 3.9357 -1.7930 -2.9328 29 1 7.3763 -3.7097 -0.5358 30 1 9.7988 -3.4174 -0.9104 31 1 11.4376 -1.8134 -2.4356 32 1 11.8111 0.6792 -2.8093 33 1 9.9464 2.1566 -1.9499 34 1 4.3211 -3.6977 -1.0497 35 1 5.8208 -3.5195 -0.1019 36 1 4.9727 -1.5295 1.0064 37 1 3.6860 -2.7603 1.0991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255205898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = 68.915638 kcal Electronic energy + Delta-G solvation = -21260.118525 eV Core-core repulsion = 18131.444836 eV Total energy + Delta-G solvation = -3128.673689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02532 -37.95665 -37.02911 -33.96160 -33.89076 -31.51702 -30.82497 -28.88093 -27.18444 -24.93113 -23.62800 -23.38564 -21.98703 -20.42309 -19.60480 -18.60628 -17.59650 -16.67009 -16.39368 -15.63331 -15.22309 -15.11762 -14.63038 -14.26910 -14.00348 -13.71692 -13.41433 -13.17289 -12.82605 -12.75827 -12.52898 -12.44061 -12.08947 -12.03334 -11.81691 -11.00305 -10.89918 -10.74222 -10.47784 -10.34231 -10.14709 -9.91535 -9.68123 -9.48415 -8.79263 -8.53781 -8.10856 -7.94929 -6.84882 -6.03152 -3.52211 0.24478 1.61052 1.82478 2.16659 2.78042 3.28162 3.40572 3.45260 3.47920 3.54461 4.46636 4.76811 4.88651 4.94074 5.03634 5.23448 5.32519 5.35561 5.49375 5.57460 5.59063 5.72349 5.80225 5.86955 6.00764 6.05251 6.12446 6.21340 6.27888 6.35742 6.44835 6.48694 6.52498 6.69186 6.95968 7.79524 7.97217 8.29553 8.48635 8.85677 9.62125 10.03662 11.12271 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004942 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.579370 B = 5664.249862 C = 6370.000661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.034 3.966 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.269 4.269 8 H 0.083 0.917 9 N -0.605 5.605 10 C 0.116 3.884 11 C 0.097 3.903 12 N -0.595 5.595 13 C 0.535 3.465 14 O -0.545 6.545 15 C -0.228 4.228 16 C 0.011 3.989 17 C -0.187 4.187 18 C -0.112 4.112 19 C -0.149 4.149 20 C -0.260 4.260 21 S 0.241 5.759 22 C 0.086 3.914 23 C 0.133 3.867 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.004 -4.039 -1.301 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.166 4.166 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.228 1.228 6 H -0.196 1.196 7 C -0.397 4.397 8 H 0.100 0.900 9 N -0.329 5.329 10 C -0.010 4.010 11 C -0.027 4.027 12 N -0.327 5.327 13 C 0.327 3.673 14 O -0.426 6.426 15 C -0.252 4.252 16 C -0.010 4.010 17 C -0.305 4.305 18 C -0.144 4.144 19 C -0.181 4.181 20 C -0.398 4.398 21 S 0.512 5.488 22 C -0.038 4.038 23 C 0.006 3.994 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.633 -3.149 -1.072 18.928 hybrid contribution 1.672 0.622 -0.795 1.953 sum 20.305 -2.527 -1.867 20.547 Atomic orbital electron populations 1.69783 1.05841 1.26820 1.52398 1.25531 0.95214 0.97887 0.97985 0.86870 0.79721 0.84125 0.77765 1.21083 1.22834 1.19597 1.18845 0.81961 0.93933 1.44991 0.89997 1.44225 1.05022 1.45566 1.38068 1.21738 0.96674 0.92646 0.89974 1.22200 0.92030 0.93217 0.95279 1.48028 1.07101 1.39953 1.37649 1.17121 0.82479 0.82233 0.85504 1.90860 1.76707 1.44225 1.30817 1.22349 0.94134 1.05427 1.03259 1.20594 0.94984 0.92743 0.92694 1.22546 0.99606 0.97931 1.10463 1.20729 0.96653 0.96500 1.00505 1.19837 1.00686 0.92907 1.04641 1.25275 1.00427 1.04905 1.09148 1.83418 1.18707 0.94489 1.52210 1.22553 0.97984 0.93040 0.90236 1.21434 0.92690 0.92762 0.92464 0.92564 0.95438 0.90048 0.89804 0.91444 0.84140 0.84177 0.84211 0.84892 0.82309 0.91197 0.90365 0.95412 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.21 13.97 55.49 0.78 -26.43 16 2 C 0.03 0.97 5.28 -17.43 -0.09 0.87 16 3 Si 0.89 22.14 24.48 -169.99 -4.16 17.98 16 4 H -0.28 -6.84 6.58 56.52 0.37 -6.47 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.27 -6.73 6.96 56.52 0.39 -6.34 16 7 C -0.27 -7.26 9.96 -15.06 -0.15 -7.41 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 N -0.60 -13.85 2.59 -171.76 -0.44 -14.30 16 10 C 0.12 2.51 4.38 -3.60 -0.02 2.49 16 11 C 0.10 1.82 6.58 -3.59 -0.02 1.80 16 12 N -0.60 -10.15 2.94 -175.67 -0.52 -10.67 16 13 C 0.54 8.82 6.18 -15.02 -0.09 8.72 16 14 O -0.55 -10.38 13.09 5.12 0.07 -10.32 16 15 C -0.23 -2.90 8.93 -39.27 -0.35 -3.25 16 16 C 0.01 0.13 9.77 -39.23 -0.38 -0.25 16 17 C -0.19 -2.48 4.81 -38.74 -0.19 -2.67 16 18 C -0.11 -1.33 10.25 -40.31 -0.41 -1.74 16 19 C -0.15 -1.74 10.15 -41.41 -0.42 -2.16 16 20 C -0.26 -3.25 10.92 29.20 0.32 -2.93 16 21 S 0.24 3.46 19.98 -107.50 -2.15 1.31 16 22 C 0.09 1.30 6.52 -3.36 -0.02 1.28 16 23 C 0.13 2.45 6.69 -3.36 -0.02 2.42 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 26 H 0.08 1.89 5.25 -51.93 -0.27 1.62 16 27 H 0.08 1.57 7.02 -51.93 -0.36 1.20 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.14 1.39 5.99 -52.49 -0.31 1.07 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.90 5.36 -51.93 -0.28 0.62 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -32.47 309.88 -8.18 -40.65 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.57 Total: -0.08 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.85 Total: -2.81 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.19 Total: -51.39 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.16 Total: 17.98 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.15 Total: 1.31 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.47 -8.18 -40.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255205898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.567 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds