Wall clock time and date at job start Tue Mar 31 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99986 * 2 1 4 4 H 1.48502 * 109.47234 * 266.74386 * 3 2 1 5 5 H 1.48496 * 109.47548 * 26.74531 * 3 2 1 6 6 H 1.48509 * 109.47150 * 146.74647 * 3 2 1 7 7 C 1.38816 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99966 * 345.73498 * 7 2 1 9 9 N 1.36937 * 119.99781 * 165.73546 * 7 2 1 10 10 C 1.46967 * 120.59562 * 321.68144 * 9 7 2 11 11 C 1.53370 * 108.63645 * 235.20585 * 10 9 7 12 12 N 1.46970 * 108.63252 * 310.57637 * 11 10 9 13 13 C 1.34777 * 120.58870 * 235.20372 * 12 11 10 14 14 O 1.21781 * 120.00306 * 354.51080 * 13 12 11 15 15 C 1.41481 * 119.99422 * 174.51092 * 13 12 11 16 16 C 1.35654 * 119.99485 * 199.35369 * 15 13 12 17 17 C 1.41582 * 120.00163 * 24.50837 * 16 15 13 18 18 C 1.37048 * 125.47339 * 211.77550 * 17 16 15 19 19 C 1.37430 * 113.22360 * 179.97438 * 18 17 16 20 20 C 1.33869 * 115.12684 * 359.97438 * 19 18 17 21 21 S 1.70602 * 111.01446 * 0.02562 * 20 19 18 22 22 C 1.46965 * 118.81513 * 55.47331 * 12 11 10 23 23 C 1.46963 * 120.59366 * 141.65261 * 9 7 2 24 24 H 0.97000 * 119.99511 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.61430 * 115.45711 * 10 9 7 26 26 H 1.09000 * 109.74754 * 355.03238 * 10 9 7 27 27 H 1.08993 * 109.61169 * 190.82945 * 11 10 9 28 28 H 1.08997 * 109.60995 * 70.31617 * 11 10 9 29 29 H 1.07993 * 120.00020 * 19.35481 * 15 13 12 30 30 H 1.07998 * 119.99798 * 204.50275 * 16 15 13 31 31 H 1.07999 * 123.38706 * 0.02562 * 18 17 16 32 32 H 1.07997 * 122.43975 * 180.02562 * 19 18 17 33 33 H 1.08000 * 124.48795 * 180.26451 * 20 19 18 34 34 H 1.08996 * 109.60549 * 64.26558 * 22 12 11 35 35 H 1.08994 * 109.61286 * 184.78215 * 22 12 11 36 36 H 1.08997 * 109.61337 * 244.54081 * 23 9 7 37 37 H 1.09000 * 109.60650 * 5.05747 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5666 2.0067 -1.3978 5 1 1.4150 2.6716 0.6300 6 1 3.5117 1.4610 0.7678 7 6 2.0102 -1.2022 -0.0005 8 1 1.4951 -2.1231 0.2295 9 7 3.3479 -1.2204 -0.2928 10 6 3.8980 -0.3417 -1.3345 11 6 4.6491 -1.2039 -2.3566 12 7 5.5604 -2.1022 -1.6337 13 6 6.8770 -2.1200 -1.9214 14 8 7.3059 -1.4628 -2.8526 15 6 7.7609 -2.9024 -1.1414 16 6 9.0914 -2.6386 -1.1543 17 6 9.5529 -1.3421 -1.4874 18 6 10.7333 -1.0569 -2.1225 19 6 10.9301 0.2885 -2.3220 20 6 9.9497 1.0796 -1.8692 21 16 8.7031 0.1606 -1.1537 22 6 5.0095 -2.9849 -0.5958 23 6 4.2593 -2.1185 0.4301 24 1 -0.4849 0.8401 0.0004 25 1 4.5857 0.3739 -0.8838 26 1 3.0881 0.1924 -1.8313 27 1 5.2223 -0.5622 -3.0256 28 1 3.9357 -1.7930 -2.9328 29 1 7.3763 -3.7097 -0.5358 30 1 9.7988 -3.4174 -0.9104 31 1 11.4376 -1.8134 -2.4356 32 1 11.8111 0.6792 -2.8093 33 1 9.9464 2.1566 -1.9499 34 1 4.3211 -3.6977 -1.0497 35 1 5.8208 -3.5195 -0.1019 36 1 4.9727 -1.5295 1.0064 37 1 3.6860 -2.7603 1.0991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255205898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:02 Heat of formation + Delta-G solvation = 48.265751 kcal Electronic energy + Delta-G solvation = -21261.013971 eV Core-core repulsion = 18131.444836 eV Total energy + Delta-G solvation = -3129.569135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28330 -39.04001 -38.39748 -35.62906 -34.87917 -33.50423 -32.29381 -29.96437 -28.73528 -26.09723 -25.27870 -24.69408 -23.31764 -21.87903 -20.52677 -19.91471 -18.96425 -18.19245 -17.68527 -17.00522 -16.66785 -16.44958 -15.97370 -15.87054 -15.41898 -15.12721 -14.65540 -14.53087 -14.15269 -14.03244 -13.95068 -13.61722 -13.56810 -13.31830 -12.91802 -12.70759 -12.43570 -12.31410 -12.04898 -11.84949 -11.71191 -11.69294 -10.94526 -10.83269 -10.67693 -9.87780 -9.29822 -8.92314 -8.69123 -8.21373 -5.65977 -0.69065 0.66833 0.86159 1.22499 1.27431 1.36823 1.45944 1.84404 2.15120 2.37502 2.43731 3.06390 3.28804 3.82762 3.95171 4.10511 4.17776 4.19727 4.30725 4.41932 4.50214 4.53140 4.57739 4.63828 4.72121 4.74062 4.86041 4.94399 4.97040 5.18612 5.20146 5.26455 5.42740 5.56070 5.65666 5.89730 6.14199 6.56541 6.88850 7.25309 7.54398 8.01238 8.97942 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004942 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.579370 B = 5664.249862 C = 6370.000661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.018 4.018 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.306 1.306 6 H -0.268 1.268 7 C -0.252 4.252 8 H 0.055 0.945 9 N -0.618 5.618 10 C 0.118 3.882 11 C 0.109 3.891 12 N -0.604 5.604 13 C 0.535 3.465 14 O -0.577 6.577 15 C -0.251 4.251 16 C 0.031 3.969 17 C -0.203 4.203 18 C -0.107 4.107 19 C -0.152 4.152 20 C -0.262 4.262 21 S 0.167 5.833 22 C 0.096 3.904 23 C 0.127 3.873 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.173 0.827 30 H 0.186 0.814 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.034 0.966 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.639 -5.304 -1.368 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.214 4.214 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.234 1.234 6 H -0.193 1.193 7 C -0.382 4.382 8 H 0.073 0.927 9 N -0.343 5.343 10 C -0.008 4.008 11 C -0.016 4.016 12 N -0.336 5.336 13 C 0.329 3.671 14 O -0.460 6.460 15 C -0.274 4.274 16 C 0.010 3.990 17 C -0.320 4.320 18 C -0.139 4.139 19 C -0.183 4.183 20 C -0.400 4.400 21 S 0.438 5.562 22 C -0.027 4.027 23 C 0.002 3.998 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.190 0.810 30 H 0.203 0.797 31 H 0.189 0.811 32 H 0.178 0.822 33 H 0.190 0.810 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.052 0.948 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 22.319 -4.442 -1.134 22.785 hybrid contribution 0.707 0.979 -0.820 1.460 sum 23.026 -3.463 -1.953 23.366 Atomic orbital electron populations 1.69900 1.07323 1.27362 1.55173 1.26080 0.95695 1.00795 0.98847 0.85976 0.78359 0.80634 0.78150 1.20006 1.23393 1.19288 1.18793 0.83828 0.92766 1.42806 0.92690 1.44352 1.04293 1.46507 1.39183 1.21634 0.96048 0.92877 0.90228 1.21844 0.92119 0.93234 0.94408 1.48098 1.07349 1.40100 1.38054 1.17711 0.82264 0.81715 0.85421 1.90839 1.77011 1.45703 1.32417 1.22393 0.93935 1.06285 1.04755 1.21120 0.95323 0.92622 0.89909 1.22845 0.99797 0.97874 1.11523 1.21185 0.96397 0.97297 0.98973 1.20262 1.01148 0.93029 1.03877 1.25488 0.99799 1.05697 1.08996 1.83642 1.21173 0.97197 1.54236 1.22536 0.99118 0.92027 0.89009 1.21648 0.92264 0.92505 0.93376 0.92758 0.95765 0.92177 0.89971 0.91848 0.81029 0.79714 0.81084 0.82199 0.80959 0.91201 0.85839 0.94821 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.93 13.97 21.65 0.30 -58.63 16 2 C -0.02 -1.03 5.28 84.86 0.45 -0.58 16 3 Si 0.94 46.69 24.48 68.60 1.68 48.37 16 4 H -0.27 -12.99 6.58 99.48 0.65 -12.34 16 5 H -0.31 -15.31 7.11 99.48 0.71 -14.61 16 6 H -0.27 -13.02 6.96 99.48 0.69 -12.33 16 7 C -0.25 -13.88 9.96 84.03 0.84 -13.04 16 8 H 0.06 3.28 8.06 -2.91 -0.02 3.26 16 9 N -0.62 -28.26 2.59 -697.34 -1.80 -30.06 16 10 C 0.12 5.12 4.38 86.41 0.38 5.50 16 11 C 0.11 4.08 6.58 86.41 0.57 4.64 16 12 N -0.60 -19.59 2.94 -827.87 -2.43 -22.02 16 13 C 0.54 16.51 6.18 85.04 0.53 17.04 16 14 O -0.58 -21.30 13.09 -4.61 -0.06 -21.36 16 15 C -0.25 -5.43 8.93 22.47 0.20 -5.23 16 16 C 0.03 0.59 9.77 22.50 0.22 0.80 16 17 C -0.20 -4.77 4.81 22.82 0.11 -4.66 16 18 C -0.11 -2.13 10.25 21.80 0.22 -1.91 16 19 C -0.15 -3.08 10.15 21.08 0.21 -2.87 16 20 C -0.26 -6.15 10.92 66.83 0.73 -5.42 16 21 S 0.17 4.65 19.98 -56.49 -1.13 3.52 16 22 C 0.10 2.67 6.52 86.57 0.56 3.23 16 23 C 0.13 4.49 6.69 86.57 0.58 5.07 16 24 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 26 H 0.06 2.83 5.25 -2.39 -0.01 2.82 16 27 H 0.08 3.09 7.02 -2.39 -0.02 3.07 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.17 2.49 5.99 -2.91 -0.02 2.48 16 30 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 32 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.12 2.31 5.36 -2.39 -0.01 2.29 16 36 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 2.75 7.93 -2.39 -0.02 2.73 16 Total: -1.00 -72.56 309.88 3.17 -69.39 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.01 Total: 8.23 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.60 Total: 2.57 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -3.94 Total: -110.72 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.36 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.68 Total: 48.37 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.13 Total: 3.52 kcal Total: -72.56 3.17 -69.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255205898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.658 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds