Wall clock time and date at job start Tue Mar 31 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.36292 * 120.00096 * 119.31360 * 3 2 1 5 5 C 1.46646 * 120.00382 * 168.98836 * 4 3 2 6 6 C 1.40165 * 120.11201 * 316.66988 * 5 4 3 7 7 C 1.37079 * 119.88044 * 179.73662 * 6 5 4 8 8 C 1.39212 * 120.11686 * 0.53352 * 7 6 5 9 9 O 1.35557 * 119.88651 * 179.69328 * 8 7 6 10 10 C 1.34772 * 117.00002 * 174.26569 * 9 8 7 11 11 H 1.08008 * 120.00006 * 5.08320 * 10 9 8 12 12 C 1.38704 * 120.00180 * 185.07982 * 10 9 8 13 13 N 1.31516 * 119.99983 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00288 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.46979 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47169 * 120.00032 * 14 12 10 17 17 H 1.48495 * 109.47494 * 240.00294 * 14 12 10 18 18 C 1.39206 * 120.22593 * 359.72019 * 8 7 6 19 19 C 1.37081 * 120.11749 * 0.02562 * 18 8 7 20 20 C 1.47986 * 120.00084 * 299.30873 * 3 2 1 21 21 C 1.39537 * 119.74724 * 346.86969 * 20 3 2 22 22 C 1.38319 * 119.05947 * 180.02562 * 21 20 3 23 23 C 1.38856 * 118.52492 * 0.02562 * 22 21 20 24 24 C 1.38237 * 119.40490 * 0.25403 * 23 22 21 25 25 N 1.31771 * 120.90913 * 359.47227 * 24 23 22 26 26 H 1.08001 * 119.99767 * 348.99379 * 4 3 2 27 27 H 1.07997 * 120.05845 * 359.97438 * 6 5 4 28 28 H 1.07997 * 119.94419 * 180.27535 * 7 6 5 29 29 H 0.97002 * 120.00067 * 179.97438 * 13 12 10 30 30 H 1.08008 * 119.94295 * 179.97438 * 18 8 7 31 31 H 1.08001 * 120.06018 * 180.02562 * 19 18 8 32 32 H 1.08000 * 120.47118 * 0.04084 * 21 20 3 33 33 H 1.07991 * 120.73871 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.29730 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.54778 * 179.74881 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2492 0.5788 -1.0292 5 6 4.6954 0.7967 -0.9207 6 6 5.2440 1.2958 0.2687 7 6 6.5970 1.4926 0.3667 8 6 7.4246 1.2082 -0.7160 9 8 8.7612 1.4104 -0.6160 10 6 9.5206 1.0055 -1.6531 11 1 9.0527 0.6191 -2.5466 12 6 10.9031 1.0851 -1.5732 13 7 11.4729 1.5552 -0.4851 14 14 11.9557 0.5232 -3.0105 15 1 11.0787 0.0389 -4.1068 16 1 12.7750 1.6614 -3.4988 17 1 12.8500 -0.5769 -2.5689 18 6 6.8841 0.7173 -1.9012 19 6 5.5329 0.5121 -2.0079 20 6 3.3082 -0.6264 1.1175 21 6 2.6328 -0.9690 2.2895 22 6 3.3388 -1.5538 3.3253 23 6 4.6988 -1.7777 3.1574 24 6 5.3063 -1.4082 1.9719 25 7 4.6105 -0.8572 0.9979 26 1 2.7240 0.8766 -1.9246 27 1 4.6023 1.5213 1.1076 28 1 7.0214 1.8729 1.2842 29 1 12.4397 1.6105 -0.4291 30 1 7.5303 0.4986 -2.7385 31 1 5.1146 0.1309 -2.9277 32 1 1.5739 -0.7804 2.3864 33 1 2.8434 -1.8295 4.2444 34 1 5.2778 -2.2322 3.9477 35 1 6.3648 -1.5775 1.8404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255369474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:01 Heat of formation + Delta-G solvation = 97.508774 kcal Electronic energy + Delta-G solvation = -21481.711721 eV Core-core repulsion = 18218.833972 eV Total energy + Delta-G solvation = -3262.877749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27674 -38.97892 -37.16803 -36.48678 -34.00997 -32.39449 -32.26168 -30.64275 -30.21122 -28.26631 -25.64347 -24.06919 -23.35591 -22.33178 -21.86095 -20.16623 -18.24716 -17.93010 -17.12480 -16.13888 -15.97694 -15.20766 -14.90810 -14.64868 -14.38398 -14.21287 -13.80718 -13.62437 -13.45662 -13.28201 -13.01529 -12.96098 -12.73758 -12.42722 -12.25894 -11.79878 -11.69615 -11.38178 -11.02940 -10.96601 -10.67954 -10.50109 -10.13085 -9.67898 -9.41527 -9.28126 -8.91751 -8.40550 -8.09220 -6.91045 -6.59248 -4.13409 0.50155 1.32540 1.59623 2.34944 2.47864 2.67495 3.06190 3.07695 3.13094 3.40879 3.86238 3.87455 4.13166 4.51329 4.60649 4.77103 4.94813 4.99694 5.13972 5.17334 5.19096 5.28723 5.54111 5.62491 5.69781 5.79892 5.94332 6.07438 6.18215 6.26280 6.29821 6.44791 6.62688 6.78296 6.89697 6.98617 7.22587 7.31530 7.36594 7.55429 7.77153 7.87400 8.14284 8.86482 9.56061 10.57806 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.003951 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.614990 B = 7084.438377 C = 7873.656456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.272 3.728 3 C -0.104 4.104 4 C 0.078 3.922 5 C -0.178 4.178 6 C 0.009 3.991 7 C -0.203 4.203 8 C 0.174 3.826 9 O -0.167 6.167 10 C -0.389 4.389 11 H 0.097 0.903 12 C 0.040 3.960 13 N -0.855 5.855 14 Si 0.942 3.058 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.247 4.247 19 C -0.028 4.028 20 C 0.188 3.812 21 C -0.175 4.175 22 C -0.075 4.075 23 C -0.182 4.182 24 C 0.112 3.888 25 N -0.443 5.443 26 H 0.127 0.873 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.272 0.728 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 -4.519 3.009 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.042 4.042 3 C -0.108 4.108 4 C 0.054 3.946 5 C -0.179 4.179 6 C -0.011 4.011 7 C -0.222 4.222 8 C 0.118 3.882 9 O -0.069 6.069 10 C -0.465 4.465 11 H 0.114 0.886 12 C -0.165 4.165 13 N -0.488 5.488 14 Si 0.766 3.234 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.200 1.200 18 C -0.266 4.266 19 C -0.047 4.047 20 C 0.051 3.949 21 C -0.195 4.195 22 C -0.101 4.101 23 C -0.202 4.202 24 C -0.046 4.046 25 N -0.150 5.150 26 H 0.145 0.855 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.661 -4.166 2.535 12.640 hybrid contribution 0.546 -0.646 0.220 0.874 sum -11.115 -4.812 2.755 12.421 Atomic orbital electron populations 1.81223 1.11975 1.10571 1.08279 1.25560 0.92405 0.92848 0.93380 1.16166 0.83171 1.11528 0.99983 1.22561 0.93886 0.84400 0.93740 1.17980 0.90593 1.13216 0.96146 1.20363 0.93444 0.93076 0.94176 1.19860 0.92463 1.11678 0.98215 1.19558 0.84887 0.90824 0.92891 1.83894 1.12461 1.68098 1.42408 1.21488 0.87776 1.42774 0.94441 0.88585 1.25353 0.96127 0.96576 0.98459 1.70027 1.11265 1.41107 1.26429 0.85624 0.79557 0.78580 0.79590 1.18907 1.20047 1.20021 1.20846 0.95350 1.11196 0.99253 1.20635 0.92893 0.95251 0.95928 1.19263 0.89819 0.94799 0.91002 1.22007 1.00904 1.02284 0.94351 1.21406 0.94279 0.96014 0.98380 1.22180 0.95479 1.02752 0.99821 1.22881 1.00493 0.92426 0.88793 1.68277 1.05807 1.10469 1.30467 0.85544 0.88008 0.86818 0.91814 0.85540 0.87321 0.85793 0.85277 0.85088 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.57 18.54 41.84 0.78 -5.79 16 2 C 0.27 3.62 14.07 -22.47 -0.32 3.30 16 3 C -0.10 -1.35 5.70 -104.68 -0.60 -1.94 16 4 C 0.08 0.99 9.45 -36.89 -0.35 0.64 16 5 C -0.18 -2.76 4.41 -105.06 -0.46 -3.22 16 6 C 0.01 0.14 6.48 -39.28 -0.25 -0.11 16 7 C -0.20 -3.92 9.95 -39.64 -0.39 -4.32 16 8 C 0.17 3.85 6.66 -38.86 -0.26 3.59 16 9 O -0.17 -4.44 9.74 0.81 0.01 -4.43 16 10 C -0.39 -10.15 9.48 30.90 0.29 -9.86 16 11 H 0.10 2.31 5.18 -52.48 -0.27 2.04 16 12 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 13 N -0.85 -23.72 13.67 55.48 0.76 -22.96 16 14 Si 0.94 19.36 29.55 -169.99 -5.02 14.33 16 15 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 18 C -0.25 -4.88 9.12 -39.64 -0.36 -5.24 16 19 C -0.03 -0.47 9.77 -39.28 -0.38 -0.85 16 20 C 0.19 2.56 5.52 -82.97 -0.46 2.10 16 21 C -0.18 -2.11 9.47 -39.07 -0.37 -2.48 16 22 C -0.07 -0.79 10.16 -39.32 -0.40 -1.19 16 23 C -0.18 -1.99 10.11 -39.35 -0.40 -2.39 16 24 C 0.11 1.49 11.17 -17.58 -0.20 1.30 16 25 N -0.44 -6.56 5.54 -9.81 -0.05 -6.62 16 26 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 27 H 0.10 1.57 7.04 -52.49 -0.37 1.20 16 28 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.13 2.52 5.62 -52.48 -0.29 2.23 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.12 1.39 7.23 -52.49 -0.38 1.01 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -29.20 317.11 -6.75 -35.95 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -2.99 Total: 4.45 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -5.00 Total: -19.71 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 1.48 Total: -35.37 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.01 Total: -4.43 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.20 -6.75 -35.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255369474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.455 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds