Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.36292 * 120.00096 * 119.31360 * 3 2 1 5 5 C 1.46646 * 120.00382 * 168.98836 * 4 3 2 6 6 C 1.40165 * 120.11201 * 316.66988 * 5 4 3 7 7 C 1.37079 * 119.88044 * 179.73662 * 6 5 4 8 8 C 1.39212 * 120.11686 * 0.53352 * 7 6 5 9 9 O 1.35557 * 119.88651 * 179.69328 * 8 7 6 10 10 C 1.34772 * 117.00002 * 174.26569 * 9 8 7 11 11 H 1.08008 * 120.00006 * 5.08320 * 10 9 8 12 12 C 1.38704 * 120.00180 * 185.07982 * 10 9 8 13 13 N 1.31516 * 119.99983 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00288 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.46979 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47169 * 120.00032 * 14 12 10 17 17 H 1.48495 * 109.47494 * 240.00294 * 14 12 10 18 18 C 1.39206 * 120.22593 * 359.72019 * 8 7 6 19 19 C 1.37081 * 120.11749 * 0.02562 * 18 8 7 20 20 C 1.47986 * 120.00084 * 299.30873 * 3 2 1 21 21 C 1.39537 * 119.74724 * 346.86969 * 20 3 2 22 22 C 1.38319 * 119.05947 * 180.02562 * 21 20 3 23 23 C 1.38856 * 118.52492 * 0.02562 * 22 21 20 24 24 C 1.38237 * 119.40490 * 0.25403 * 23 22 21 25 25 N 1.31771 * 120.90913 * 359.47227 * 24 23 22 26 26 H 1.08001 * 119.99767 * 348.99379 * 4 3 2 27 27 H 1.07997 * 120.05845 * 359.97438 * 6 5 4 28 28 H 1.07997 * 119.94419 * 180.27535 * 7 6 5 29 29 H 0.97002 * 120.00067 * 179.97438 * 13 12 10 30 30 H 1.08008 * 119.94295 * 179.97438 * 18 8 7 31 31 H 1.08001 * 120.06018 * 180.02562 * 19 18 8 32 32 H 1.08000 * 120.47118 * 0.04084 * 21 20 3 33 33 H 1.07991 * 120.73871 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.29730 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.54778 * 179.74881 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2492 0.5788 -1.0292 5 6 4.6954 0.7967 -0.9207 6 6 5.2440 1.2958 0.2687 7 6 6.5970 1.4926 0.3667 8 6 7.4246 1.2082 -0.7160 9 8 8.7612 1.4104 -0.6160 10 6 9.5206 1.0055 -1.6531 11 1 9.0527 0.6191 -2.5466 12 6 10.9031 1.0851 -1.5732 13 7 11.4729 1.5552 -0.4851 14 14 11.9557 0.5232 -3.0105 15 1 11.0787 0.0389 -4.1068 16 1 12.7750 1.6614 -3.4988 17 1 12.8500 -0.5769 -2.5689 18 6 6.8841 0.7173 -1.9012 19 6 5.5329 0.5121 -2.0079 20 6 3.3082 -0.6264 1.1175 21 6 2.6328 -0.9690 2.2895 22 6 3.3388 -1.5538 3.3253 23 6 4.6988 -1.7777 3.1574 24 6 5.3063 -1.4082 1.9719 25 7 4.6105 -0.8572 0.9979 26 1 2.7240 0.8766 -1.9246 27 1 4.6023 1.5213 1.1076 28 1 7.0214 1.8729 1.2842 29 1 12.4397 1.6105 -0.4291 30 1 7.5303 0.4986 -2.7385 31 1 5.1146 0.1309 -2.9277 32 1 1.5739 -0.7804 2.3864 33 1 2.8434 -1.8295 4.2444 34 1 5.2778 -2.2322 3.9477 35 1 6.3648 -1.5775 1.8404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255369474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = 82.459207 kcal Electronic energy + Delta-G solvation = -21482.364319 eV Core-core repulsion = 18218.833972 eV Total energy + Delta-G solvation = -3263.530347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37043 -40.49871 -38.50553 -37.78879 -35.24262 -34.17590 -33.25136 -31.91877 -31.54146 -29.60446 -27.41814 -25.27536 -24.38539 -23.53217 -23.31459 -21.52778 -19.83928 -19.05823 -18.79016 -17.17497 -17.00993 -16.49123 -16.28235 -16.19418 -15.63930 -15.52020 -15.39649 -14.92343 -14.69466 -14.50388 -14.25368 -14.14561 -13.95307 -13.84571 -13.52613 -13.27752 -12.97548 -12.67480 -12.47852 -12.37522 -12.18829 -12.06354 -11.24213 -11.05433 -10.85401 -10.63000 -10.29398 -9.57231 -9.51507 -8.44741 -8.36189 -6.08926 -0.57326 0.32222 0.54690 0.90910 1.09415 1.39650 1.48030 1.57023 1.57959 2.20802 2.32451 2.74572 2.94129 3.10551 3.29539 3.52882 3.59334 3.81190 4.08003 4.12943 4.20396 4.23581 4.27812 4.30828 4.55101 4.67331 4.80323 4.83532 4.94508 5.07290 5.14949 5.22852 5.32407 5.33646 5.45968 5.70047 5.79726 5.83077 5.87117 6.08869 6.28769 6.46647 7.01630 7.11905 7.83329 8.78817 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.003951 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.614990 B = 7084.438377 C = 7873.656456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.291 3.709 3 C -0.079 4.079 4 C 0.074 3.926 5 C -0.146 4.146 6 C 0.017 3.983 7 C -0.209 4.209 8 C 0.139 3.861 9 O -0.227 6.227 10 C -0.408 4.408 11 H 0.105 0.895 12 C -0.021 4.021 13 N -0.918 5.918 14 Si 1.015 2.985 15 H -0.250 1.250 16 H -0.271 1.271 17 H -0.270 1.270 18 C -0.253 4.253 19 C -0.029 4.029 20 C 0.161 3.839 21 C -0.172 4.172 22 C -0.070 4.070 23 C -0.169 4.169 24 C 0.090 3.910 25 N -0.471 5.471 26 H 0.167 0.833 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.272 0.728 30 H 0.119 0.881 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 -5.841 2.711 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.023 4.023 3 C -0.084 4.084 4 C 0.051 3.949 5 C -0.147 4.147 6 C -0.002 4.002 7 C -0.228 4.228 8 C 0.087 3.913 9 O -0.132 6.132 10 C -0.484 4.484 11 H 0.122 0.878 12 C -0.219 4.219 13 N -0.556 5.556 14 Si 0.835 3.165 15 H -0.173 1.173 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.272 4.272 19 C -0.047 4.047 20 C 0.025 3.975 21 C -0.192 4.192 22 C -0.096 4.096 23 C -0.189 4.189 24 C -0.067 4.067 25 N -0.179 5.179 26 H 0.184 0.816 27 H 0.136 0.864 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.376 -5.501 2.233 16.482 hybrid contribution 1.052 -0.369 0.524 1.232 sum -14.324 -5.870 2.757 15.724 Atomic orbital electron populations 1.81274 1.12560 1.11023 1.08847 1.25346 0.92018 0.92219 0.92736 1.16182 0.83007 1.09962 0.99220 1.22692 0.92013 0.84994 0.95231 1.18292 0.92268 1.09323 0.94824 1.20498 0.92227 0.92283 0.95229 1.19948 0.93554 1.11877 0.97423 1.20032 0.84104 0.92448 0.94680 1.83872 1.14307 1.71637 1.43410 1.21893 0.88458 1.43169 0.94908 0.87761 1.26536 0.97241 0.96714 1.01384 1.70168 1.11403 1.44799 1.29226 0.84568 0.77582 0.78108 0.76249 1.17297 1.19586 1.19560 1.20937 0.96891 1.11211 0.98198 1.20977 0.91425 0.94556 0.97782 1.19438 0.89725 0.96228 0.92109 1.22203 1.01437 1.01504 0.94095 1.21812 0.93946 0.94631 0.99174 1.22445 0.96036 1.01194 0.99219 1.22913 1.00382 0.93578 0.89875 1.68118 1.06599 1.11504 1.31669 0.81606 0.86365 0.87772 0.91890 0.86348 0.83525 0.84727 0.81905 0.82486 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.94 18.54 19.00 0.35 -11.59 16 2 C 0.29 6.55 14.07 88.33 1.24 7.79 16 3 C -0.08 -1.74 5.70 -19.90 -0.11 -1.85 16 4 C 0.07 1.56 9.45 24.01 0.23 1.78 16 5 C -0.15 -4.13 4.41 -20.15 -0.09 -4.22 16 6 C 0.02 0.53 6.48 22.47 0.15 0.68 16 7 C -0.21 -8.36 9.95 22.23 0.22 -8.14 16 8 C 0.14 6.47 6.66 22.74 0.15 6.62 16 9 O -0.23 -13.01 9.74 -20.03 -0.20 -13.21 16 10 C -0.41 -22.75 9.48 67.93 0.64 -22.10 16 11 H 0.11 5.31 5.18 -2.91 -0.02 5.29 16 12 C -0.02 -1.14 5.49 84.85 0.47 -0.68 16 13 N -0.92 -54.71 13.67 21.62 0.30 -54.41 16 14 Si 1.02 41.41 29.55 68.60 2.03 43.44 16 15 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 16 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 17 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 18 C -0.25 -10.15 9.12 22.23 0.20 -9.95 16 19 C -0.03 -0.90 9.77 22.46 0.22 -0.68 16 20 C 0.16 3.91 5.52 41.90 0.23 4.14 16 21 C -0.17 -3.50 9.47 22.60 0.21 -3.29 16 22 C -0.07 -1.20 10.16 22.44 0.23 -0.97 16 23 C -0.17 -3.22 10.11 22.42 0.23 -2.99 16 24 C 0.09 2.30 11.17 84.70 0.95 3.25 16 25 N -0.47 -13.10 5.54 -184.94 -1.02 -14.13 16 26 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.12 3.41 7.04 -2.91 -0.02 3.39 16 28 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 29 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.12 4.87 5.62 -2.91 -0.02 4.86 16 31 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 32 H 0.13 2.45 7.23 -2.91 -0.02 2.43 16 33 H 0.16 1.71 8.06 -2.92 -0.02 1.68 16 34 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -69.14 317.11 7.76 -61.39 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.14 Total: 19.12 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 5.16 Total: -30.61 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -0.38 Total: -80.13 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.20 Total: -13.21 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -69.14 7.76 -61.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255369474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.846 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds