Wall clock time and date at job start Tue Mar 31 2020 06:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46869 * 2 1 4 4 C 1.50696 * 109.47206 * 120.00265 * 2 1 3 5 5 O 1.21284 * 120.00409 * 95.27669 * 4 2 1 6 6 N 1.34781 * 120.00116 * 275.27256 * 4 2 1 7 7 C 1.46497 * 120.00081 * 5.85708 * 6 4 2 8 8 C 1.50702 * 109.47028 * 93.66538 * 7 6 4 9 9 H 1.08004 * 119.99891 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00481 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99760 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00362 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46748 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46814 * 120.00019 * 12 10 8 15 15 H 1.48498 * 109.46999 * 240.00179 * 12 10 8 16 16 C 1.46499 * 120.00149 * 185.86637 * 6 4 2 17 17 C 1.52997 * 109.47478 * 84.56030 * 16 6 4 18 18 C 1.47200 * 109.47271 * 183.23307 * 17 16 6 19 19 N 6.93466 * 123.66695 * 108.60573 * 2 1 3 20 20 C 1.50703 * 109.47475 * 240.00354 * 2 1 3 21 21 C 1.33380 * 125.20349 * 119.99237 * 20 2 1 22 22 C 1.38432 * 114.92200 * 179.97438 * 21 20 2 23 23 C 1.33384 * 114.91638 * 0.02562 * 22 21 20 24 24 S 1.75880 * 109.59764 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47347 * 53.46628 * 1 2 3 26 26 H 1.09009 * 109.46871 * 173.46493 * 1 2 3 27 27 H 1.09000 * 109.47021 * 293.46112 * 1 2 3 28 28 H 1.08999 * 109.47650 * 213.67004 * 7 6 4 29 29 H 1.09010 * 109.47231 * 333.67062 * 7 6 4 30 30 H 0.96995 * 120.00076 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.46914 * 204.56499 * 16 6 4 32 32 H 1.09003 * 109.46784 * 324.55868 * 16 6 4 33 33 H 1.09007 * 109.47236 * 303.23013 * 17 16 6 34 34 H 1.08995 * 109.47390 * 63.23127 * 17 16 6 35 35 H 1.08000 * 122.54481 * 359.96219 * 21 20 2 36 36 H 1.07996 * 122.54090 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.20091 * 180.26436 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3256 -1.8860 1.1747 6 7 2.1558 -0.0395 2.3928 7 6 1.6824 1.3431 2.4944 8 6 0.2705 1.3532 3.0210 9 1 -0.2245 0.4227 3.2569 10 6 -0.3895 2.5502 3.2018 11 7 0.2131 3.6832 2.9141 12 14 -2.1394 2.5626 3.8553 13 1 -2.5863 1.1678 4.0999 14 1 -2.1872 3.3276 5.1273 15 1 -3.0353 3.2025 2.8588 16 6 2.7637 -0.6928 3.5546 17 6 4.2860 -0.5612 3.4754 18 6 4.9002 -1.2838 4.6011 19 7 5.3743 -1.8414 5.4699 20 6 2.0324 -0.7103 -1.2305 21 6 2.8024 -0.1645 -2.1729 22 6 3.1405 -1.0125 -3.2135 23 6 2.6446 -2.2469 -3.1162 24 16 1.6922 -2.3857 -1.6440 25 1 -0.3634 0.6117 -0.8257 26 1 -0.3633 -1.0211 -0.1170 27 1 -0.3633 0.4091 0.9427 28 1 2.3278 1.8992 3.1743 29 1 1.7059 1.8086 1.5089 30 1 -0.2512 4.5253 3.0409 31 1 2.4050 -0.2176 4.4676 32 1 2.4901 -1.7479 3.5626 33 1 4.6389 -0.9855 2.5353 34 1 4.5627 0.4918 3.5252 35 1 3.1366 0.8615 -2.1278 36 1 3.7589 -0.6985 -4.0413 37 1 2.8065 -3.0410 -3.8300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265677027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:18 Heat of formation + Delta-G solvation = 18.259054 kcal Electronic energy + Delta-G solvation = -20913.820725 eV Core-core repulsion = 17782.950402 eV Total energy + Delta-G solvation = -3130.870323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66023 -37.52379 -36.64884 -35.25748 -33.68987 -32.77068 -30.97694 -28.22260 -27.29837 -24.95618 -23.89826 -23.16470 -21.98096 -19.09490 -18.68665 -17.46611 -16.83801 -16.53698 -16.34346 -15.41802 -15.05202 -14.68323 -14.55409 -14.37807 -13.60719 -13.22108 -13.04272 -12.78908 -12.51131 -12.43561 -12.27812 -12.20304 -11.93541 -11.70301 -11.64219 -11.58902 -11.12934 -11.05661 -10.96472 -10.82709 -10.64095 -10.30210 -10.19014 -9.84523 -9.22333 -8.66374 -8.35966 -8.05339 -7.94766 -6.29894 -4.36523 1.27410 1.96918 2.38713 2.82345 2.93898 2.97719 3.15597 3.21024 3.25922 3.30723 3.66558 4.24257 4.35414 4.96963 5.04871 5.12508 5.24494 5.31449 5.35286 5.59224 5.63790 5.65430 5.78345 5.80971 6.04953 6.22626 6.24394 6.32087 6.37834 6.53027 6.57838 6.73115 6.87248 7.05450 7.34298 7.64591 7.69806 7.91693 8.12785 8.65483 8.82048 9.31169 10.76758 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.006290 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.973501 B = 4450.160104 C = 6395.065408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 H 0.114 0.886 4 C 0.522 3.478 5 O -0.557 6.557 6 N -0.593 5.593 7 C 0.232 3.768 8 C -0.539 4.539 9 H 0.064 0.936 10 C 0.068 3.932 11 N -0.887 5.887 12 Si 0.892 3.108 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.127 3.873 17 C -0.046 4.046 18 C 0.222 3.778 19 N -0.450 5.450 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.135 4.135 23 C -0.244 4.244 24 S 0.150 5.850 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.104 0.896 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.266 0.734 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -4.554 -9.242 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 H 0.132 0.868 4 C 0.310 3.690 5 O -0.436 6.436 6 N -0.323 5.323 7 C 0.112 3.888 8 C -0.577 4.577 9 H 0.082 0.918 10 C -0.135 4.135 11 N -0.525 5.525 12 Si 0.720 3.280 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.002 3.998 17 C -0.087 4.087 18 C -0.096 4.096 19 N -0.128 5.128 20 C -0.265 4.265 21 C -0.183 4.183 22 C -0.166 4.166 23 C -0.380 4.380 24 S 0.415 5.585 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.123 0.877 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.374 -6.962 -7.290 10.630 hybrid contribution -0.263 1.708 -0.695 1.863 sum 3.111 -5.254 -7.985 10.052 Atomic orbital electron populations 1.21962 0.91122 1.01867 1.05678 1.19808 0.98489 0.99646 0.88013 0.86836 1.20314 0.77252 0.86754 0.84709 1.90638 1.51919 1.15802 1.85277 1.48143 1.58236 1.16717 1.09211 1.19608 0.95027 0.75295 0.98831 1.21461 0.98483 0.93018 1.44731 0.91771 1.24911 0.98305 0.95328 0.94988 1.69910 1.37515 0.97674 1.47419 0.86519 0.84290 0.78416 0.78800 1.19566 1.20843 1.20730 1.21095 0.88567 0.99737 0.90410 1.19783 0.96840 1.00124 0.91952 1.29101 0.93205 0.93226 0.94104 1.81176 1.09832 1.10314 1.11462 1.24276 1.04310 0.97468 1.00444 1.20064 1.01628 1.01509 0.95106 1.20013 1.03135 0.93226 1.00266 1.25728 1.07722 1.01439 1.03099 1.84403 1.49490 1.10109 1.14478 0.91981 0.93141 0.87703 0.94368 0.93713 0.92434 0.89036 0.90221 0.87395 0.87073 0.84569 0.85045 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.09 37.16 0.34 -2.13 16 2 C -0.04 -0.61 2.32 -92.92 -0.22 -0.82 16 3 H 0.11 1.84 6.19 -51.93 -0.32 1.52 16 4 C 0.52 9.43 6.73 -10.99 -0.07 9.36 16 5 O -0.56 -10.94 14.69 5.55 0.08 -10.85 16 6 N -0.59 -10.48 2.47 -175.06 -0.43 -10.91 16 7 C 0.23 4.67 4.85 -5.19 -0.03 4.64 16 8 C -0.54 -12.31 7.26 -34.44 -0.25 -12.56 16 9 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 10 C 0.07 1.64 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -22.33 13.29 55.43 0.74 -21.59 16 12 Si 0.89 19.12 29.54 -169.99 -5.02 14.10 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 16 C 0.13 1.97 5.38 -4.04 -0.02 1.94 16 17 C -0.05 -0.58 5.99 -29.52 -0.18 -0.76 16 18 C 0.22 3.18 15.43 -20.76 -0.32 2.86 16 19 N -0.45 -7.51 18.54 42.15 0.78 -6.73 16 20 C -0.15 -2.28 4.87 -36.00 -0.18 -2.45 16 21 C -0.15 -2.12 10.01 -41.21 -0.41 -2.53 16 22 C -0.14 -1.69 10.18 -41.21 -0.42 -2.11 16 23 C -0.24 -3.08 11.23 29.04 0.33 -2.76 16 24 S 0.15 2.23 21.54 -107.50 -2.32 -0.08 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.81 7.78 -51.92 -0.40 0.41 16 27 H 0.10 1.98 5.57 -51.93 -0.29 1.69 16 28 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.05 0.92 5.70 -51.92 -0.30 0.63 16 30 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 32 H 0.08 1.29 7.51 -51.93 -0.39 0.90 16 33 H 0.11 1.35 8.14 -51.92 -0.42 0.93 16 34 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -27.07 333.78 -7.28 -34.35 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.62 Total: 2.47 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.52 Total: -5.79 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 1.09 Total: -39.23 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.32 Total: -0.08 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.07 -7.28 -34.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265677027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.611 kcal (2) G-P(sol) polarization free energy of solvation -27.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds