Wall clock time and date at job start Tue Mar 31 2020 06:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46869 * 2 1 4 4 C 1.50696 * 109.47206 * 120.00265 * 2 1 3 5 5 O 1.21284 * 120.00409 * 95.27669 * 4 2 1 6 6 N 1.34781 * 120.00116 * 275.27256 * 4 2 1 7 7 C 1.46497 * 120.00081 * 5.85708 * 6 4 2 8 8 C 1.50702 * 109.47028 * 93.66538 * 7 6 4 9 9 H 1.08004 * 119.99891 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00481 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99760 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00362 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46748 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46814 * 120.00019 * 12 10 8 15 15 H 1.48498 * 109.46999 * 240.00179 * 12 10 8 16 16 C 1.46499 * 120.00149 * 185.86637 * 6 4 2 17 17 C 1.52997 * 109.47478 * 84.56030 * 16 6 4 18 18 C 1.47200 * 109.47271 * 183.23307 * 17 16 6 19 19 N 6.93466 * 123.66695 * 108.60573 * 2 1 3 20 20 C 1.50703 * 109.47475 * 240.00354 * 2 1 3 21 21 C 1.33380 * 125.20349 * 119.99237 * 20 2 1 22 22 C 1.38432 * 114.92200 * 179.97438 * 21 20 2 23 23 C 1.33384 * 114.91638 * 0.02562 * 22 21 20 24 24 S 1.75880 * 109.59764 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47347 * 53.46628 * 1 2 3 26 26 H 1.09009 * 109.46871 * 173.46493 * 1 2 3 27 27 H 1.09000 * 109.47021 * 293.46112 * 1 2 3 28 28 H 1.08999 * 109.47650 * 213.67004 * 7 6 4 29 29 H 1.09010 * 109.47231 * 333.67062 * 7 6 4 30 30 H 0.96995 * 120.00076 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.46914 * 204.56499 * 16 6 4 32 32 H 1.09003 * 109.46784 * 324.55868 * 16 6 4 33 33 H 1.09007 * 109.47236 * 303.23013 * 17 16 6 34 34 H 1.08995 * 109.47390 * 63.23127 * 17 16 6 35 35 H 1.08000 * 122.54481 * 359.96219 * 21 20 2 36 36 H 1.07996 * 122.54090 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.20091 * 180.26436 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3256 -1.8860 1.1747 6 7 2.1558 -0.0395 2.3928 7 6 1.6824 1.3431 2.4944 8 6 0.2705 1.3532 3.0210 9 1 -0.2245 0.4227 3.2569 10 6 -0.3895 2.5502 3.2018 11 7 0.2131 3.6832 2.9141 12 14 -2.1394 2.5626 3.8553 13 1 -2.5863 1.1678 4.0999 14 1 -2.1872 3.3276 5.1273 15 1 -3.0353 3.2025 2.8588 16 6 2.7637 -0.6928 3.5546 17 6 4.2860 -0.5612 3.4754 18 6 4.9002 -1.2838 4.6011 19 7 5.3743 -1.8414 5.4699 20 6 2.0324 -0.7103 -1.2305 21 6 2.8024 -0.1645 -2.1729 22 6 3.1405 -1.0125 -3.2135 23 6 2.6446 -2.2469 -3.1162 24 16 1.6922 -2.3857 -1.6440 25 1 -0.3634 0.6117 -0.8257 26 1 -0.3633 -1.0211 -0.1170 27 1 -0.3633 0.4091 0.9427 28 1 2.3278 1.8992 3.1743 29 1 1.7059 1.8086 1.5089 30 1 -0.2512 4.5253 3.0409 31 1 2.4050 -0.2176 4.4676 32 1 2.4901 -1.7479 3.5626 33 1 4.6389 -0.9855 2.5353 34 1 4.5627 0.4918 3.5252 35 1 3.1366 0.8615 -2.1278 36 1 3.7589 -0.6985 -4.0413 37 1 2.8065 -3.0410 -3.8300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265677027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:17 Heat of formation + Delta-G solvation = 5.693636 kcal Electronic energy + Delta-G solvation = -20914.365602 eV Core-core repulsion = 17782.950402 eV Total energy + Delta-G solvation = -3131.415201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06276 -38.60987 -37.88651 -36.73849 -35.02623 -34.43346 -32.28725 -29.34079 -28.98569 -26.25443 -25.08306 -24.81267 -23.19565 -20.15395 -20.06066 -18.73944 -18.36545 -17.97500 -17.70674 -16.75011 -16.23620 -16.15879 -15.86137 -15.77960 -14.84953 -14.59824 -14.32571 -14.28421 -13.79638 -13.60557 -13.55872 -13.42681 -13.23299 -13.10353 -12.98460 -12.90963 -12.66695 -12.63183 -12.37470 -12.20065 -12.00918 -11.76237 -11.58128 -11.39236 -10.68830 -10.44123 -9.51092 -9.40745 -9.16864 -8.13450 -6.23041 0.21200 0.89141 1.33380 1.43754 1.50391 1.57119 1.60071 1.77084 1.82517 1.94870 2.32563 2.48871 3.16198 3.19208 3.76517 3.80291 4.13261 4.16137 4.28611 4.36086 4.39884 4.54702 4.75391 4.81772 4.86646 4.93443 4.97528 5.03531 5.06813 5.32045 5.35097 5.44379 5.55332 5.71455 5.74816 5.88644 6.15051 6.53322 6.60131 6.89171 7.33632 7.48425 8.92015 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.006290 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.973501 B = 4450.160104 C = 6395.065408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.032 4.032 3 H 0.115 0.885 4 C 0.520 3.480 5 O -0.573 6.573 6 N -0.592 5.592 7 C 0.245 3.755 8 C -0.534 4.534 9 H 0.052 0.948 10 C 0.031 3.969 11 N -0.914 5.914 12 Si 0.939 3.061 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.280 1.280 16 C 0.124 3.876 17 C -0.030 4.030 18 C 0.245 3.755 19 N -0.490 5.490 20 C -0.172 4.172 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.230 4.230 24 S 0.105 5.895 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.266 0.734 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -4.456 -10.688 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.055 4.055 3 H 0.133 0.867 4 C 0.308 3.692 5 O -0.453 6.453 6 N -0.322 5.322 7 C 0.125 3.875 8 C -0.573 4.573 9 H 0.070 0.930 10 C -0.170 4.170 11 N -0.553 5.553 12 Si 0.766 3.234 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.206 1.206 16 C -0.001 4.001 17 C -0.071 4.071 18 C -0.072 4.072 19 N -0.168 5.168 20 C -0.290 4.290 21 C -0.177 4.177 22 C -0.170 4.170 23 C -0.365 4.365 24 S 0.369 5.631 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.047 -6.875 -8.729 11.826 hybrid contribution -0.460 1.632 -0.315 1.724 sum 3.587 -5.243 -9.044 11.052 Atomic orbital electron populations 1.21854 0.91565 1.01821 1.04722 1.19715 0.98077 0.99657 0.88028 0.86694 1.20615 0.76839 0.86592 0.85121 1.90629 1.52643 1.16478 1.85592 1.48072 1.58329 1.15932 1.09870 1.19311 0.93552 0.76396 0.98276 1.21622 0.99649 0.92291 1.43716 0.92952 1.25408 1.00715 0.95300 0.95536 1.69969 1.38535 0.97965 1.48852 0.85792 0.81510 0.77963 0.78119 1.19825 1.21053 1.20599 1.21154 0.90323 0.98953 0.89634 1.19705 0.94534 1.01312 0.91551 1.29234 0.92231 0.92216 0.93554 1.81202 1.11152 1.11681 1.12732 1.24182 1.06282 0.97667 1.00842 1.20406 1.00172 1.02402 0.94671 1.20344 1.03202 0.92821 1.00657 1.26052 1.06154 1.02359 1.01949 1.84527 1.51092 1.10668 1.16795 0.90650 0.93270 0.90180 0.94814 0.93906 0.92489 0.89148 0.91096 0.86596 0.84814 0.83027 0.81963 0.79885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.09 71.98 0.65 -4.04 16 2 C -0.03 -1.04 2.32 -12.29 -0.03 -1.07 16 3 H 0.12 3.63 6.19 -2.39 -0.01 3.62 16 4 C 0.52 18.54 6.73 87.66 0.59 19.13 16 5 O -0.57 -22.31 14.69 -3.04 -0.04 -22.35 16 6 N -0.59 -20.60 2.47 -826.15 -2.04 -22.64 16 7 C 0.25 9.75 4.85 85.63 0.42 10.17 16 8 C -0.53 -24.37 7.26 25.60 0.19 -24.18 16 9 H 0.05 2.49 7.81 -2.91 -0.02 2.46 16 10 C 0.03 1.49 5.46 84.65 0.46 1.95 16 11 N -0.91 -45.73 13.29 21.45 0.28 -45.44 16 12 Si 0.94 39.11 29.54 68.60 2.03 41.14 16 13 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 14 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 16 C 0.12 3.74 5.38 86.38 0.46 4.21 16 17 C -0.03 -0.71 5.99 28.79 0.17 -0.54 16 18 C 0.24 6.73 15.43 89.44 1.38 8.11 16 19 N -0.49 -15.99 18.54 20.01 0.37 -15.62 16 20 C -0.17 -5.12 4.87 24.59 0.12 -5.01 16 21 C -0.15 -3.69 10.01 21.22 0.21 -3.48 16 22 C -0.14 -3.04 10.18 21.22 0.22 -2.83 16 23 C -0.23 -5.16 11.23 66.72 0.75 -4.41 16 24 S 0.10 3.01 21.54 -56.49 -1.22 1.80 16 25 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 1.60 7.78 -2.38 -0.02 1.58 16 27 H 0.08 3.05 5.57 -2.39 -0.01 3.04 16 28 H 0.03 1.39 8.10 -2.39 -0.02 1.37 16 29 H 0.04 1.75 5.70 -2.38 -0.01 1.74 16 30 H 0.27 12.82 8.31 -92.71 -0.77 12.04 16 31 H 0.09 2.73 8.03 -2.39 -0.02 2.71 16 32 H 0.07 2.27 7.51 -2.39 -0.02 2.25 16 33 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -56.78 333.78 6.06 -50.72 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.08 Total: 14.38 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 5.59 Total: -1.99 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.38 Total: -83.70 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.04 Total: -22.35 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.22 Total: 1.80 kcal Total: -56.78 6.06 -50.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265677027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.412 kcal (2) G-P(sol) polarization free energy of solvation -56.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds