Wall clock time and date at job start Tue Mar 31 2020 06:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46958 * 2 1 4 4 C 1.50701 * 109.46914 * 239.99937 * 2 1 3 5 5 O 1.21288 * 119.99648 * 245.40230 * 4 2 1 6 6 N 1.34769 * 120.00291 * 65.67616 * 4 2 1 7 7 C 1.46505 * 119.99897 * 4.65963 * 6 4 2 8 8 C 1.50704 * 109.47197 * 96.43045 * 7 6 4 9 9 H 1.07995 * 119.99678 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99858 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99658 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00149 * 0.02562 * 10 8 7 13 13 H 1.48491 * 109.47197 * 89.99945 * 12 10 8 14 14 H 1.48499 * 109.47077 * 210.00292 * 12 10 8 15 15 H 1.48499 * 109.47137 * 329.99803 * 12 10 8 16 16 C 1.46500 * 120.00291 * 184.65375 * 6 4 2 17 17 C 1.53000 * 109.46557 * 84.70493 * 16 6 4 18 18 C 1.47207 * 109.46978 * 180.02562 * 17 16 6 19 19 N 6.96723 * 92.29293 * 242.27708 * 2 1 3 20 20 C 1.50703 * 109.46824 * 119.99878 * 2 1 3 21 21 C 1.33391 * 125.20150 * 239.99811 * 20 2 1 22 22 C 1.38421 * 114.91734 * 179.97438 * 21 20 2 23 23 C 1.33385 * 114.92570 * 0.02562 * 22 21 20 24 24 S 1.75883 * 125.20282 * 59.69389 * 20 2 1 25 25 H 1.09002 * 109.46938 * 310.35154 * 1 2 3 26 26 H 1.08995 * 109.47035 * 70.35001 * 1 2 3 27 27 H 1.08996 * 109.47122 * 190.34789 * 1 2 3 28 28 H 1.09001 * 109.47093 * 216.43165 * 7 6 4 29 29 H 1.09004 * 109.47201 * 336.43267 * 7 6 4 30 30 H 0.96999 * 119.99622 * 179.97438 * 11 10 8 31 31 H 1.08993 * 109.47104 * 204.70073 * 16 6 4 32 32 H 1.08993 * 109.47163 * 324.70328 * 16 6 4 33 33 H 1.09001 * 109.47337 * 299.99651 * 17 16 6 34 34 H 1.08993 * 109.47519 * 60.00053 * 17 16 6 35 35 H 1.07999 * 122.53988 * 0.02562 * 21 20 2 36 36 H 1.08005 * 122.53872 * 180.02562 * 22 21 20 37 37 H 1.08003 * 125.20602 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6467 -1.7506 -1.1218 6 7 1.8037 -0.1872 -2.4512 7 6 1.1574 1.1214 -2.5780 8 6 2.2096 2.1870 -2.7478 9 1 3.2550 1.9164 -2.7596 10 6 1.8374 3.5073 -2.8869 11 7 2.7556 4.4372 -3.0346 12 14 0.0292 3.9754 -2.8643 13 1 -0.3903 4.2626 -1.4691 14 1 -0.1800 5.1830 -3.7027 15 1 -0.7796 2.8526 -3.4031 16 6 2.2015 -0.9270 -3.6515 17 6 1.1007 -1.9215 -4.0258 18 6 1.5006 -2.6653 -5.2315 19 7 1.8088 -3.2385 -6.1625 20 6 2.0323 -0.7104 1.2305 21 6 2.8025 -0.1646 2.1730 22 6 3.1394 -1.0124 3.2140 23 6 2.6434 -2.2468 3.1168 24 16 1.6865 -2.3838 1.6474 25 1 -0.3633 0.6654 0.7832 26 1 -0.3633 0.3456 -0.9678 27 1 -0.3633 -1.0109 0.1846 28 1 0.4992 1.1190 -3.4468 29 1 0.5738 1.3269 -1.6806 30 1 2.4938 5.3660 -3.1328 31 1 2.3555 -0.2288 -4.4742 32 1 3.1277 -1.4670 -3.4552 33 1 0.9467 -2.6197 -3.2030 34 1 0.1746 -1.3814 -4.2221 35 1 3.1370 0.8613 2.1277 36 1 3.7572 -0.6982 4.0424 37 1 2.8016 -3.0396 3.8329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265677032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:19 Heat of formation + Delta-G solvation = 12.362375 kcal Electronic energy + Delta-G solvation = -20947.220009 eV Core-core repulsion = 17816.093987 eV Total energy + Delta-G solvation = -3131.126022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16371 -38.64711 -37.88873 -36.82413 -35.06022 -34.54105 -32.40382 -29.60728 -29.40864 -26.13915 -25.26734 -24.44844 -23.13911 -20.24485 -20.09345 -19.13703 -18.48956 -18.01625 -17.72575 -16.76977 -16.35838 -16.05265 -15.82420 -15.79301 -15.02333 -14.76218 -14.60105 -14.16414 -13.78258 -13.74145 -13.67380 -13.51043 -13.31252 -13.25561 -13.02938 -12.81989 -12.71103 -12.58987 -12.31064 -12.15061 -11.93175 -11.80793 -11.54052 -11.46354 -10.75754 -10.59828 -9.49361 -9.45993 -9.16521 -8.22887 -6.30598 0.17530 0.86099 1.25200 1.48255 1.49726 1.58214 1.60582 1.75295 1.78466 1.92930 2.29287 2.42129 3.11730 3.17087 3.64927 3.73901 4.09740 4.15063 4.21051 4.31588 4.45990 4.54508 4.68066 4.71176 4.78400 4.86362 4.88515 4.95216 4.99127 5.07217 5.25176 5.31404 5.48410 5.55757 5.66698 5.70567 6.21586 6.54804 6.62956 6.76854 7.25934 7.37917 8.93716 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010684 B = 0.006575 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.197240 B = 4257.338861 C = 6173.460151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 H 0.107 0.893 4 C 0.520 3.480 5 O -0.570 6.570 6 N -0.588 5.588 7 C 0.201 3.799 8 C -0.542 4.542 9 H 0.025 0.975 10 C 0.015 3.985 11 N -0.949 5.949 12 Si 0.935 3.065 13 H -0.259 1.259 14 H -0.295 1.295 15 H -0.222 1.222 16 C 0.123 3.877 17 C -0.029 4.029 18 C 0.243 3.757 19 N -0.491 5.491 20 C -0.166 4.166 21 C -0.156 4.156 22 C -0.143 4.143 23 C -0.225 4.225 24 S 0.123 5.877 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.266 0.734 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 -9.592 10.654 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 H 0.125 0.875 4 C 0.308 3.692 5 O -0.450 6.450 6 N -0.318 5.318 7 C 0.079 3.921 8 C -0.581 4.581 9 H 0.043 0.957 10 C -0.183 4.183 11 N -0.588 5.588 12 Si 0.757 3.243 13 H -0.183 1.183 14 H -0.222 1.222 15 H -0.144 1.144 16 C -0.002 4.002 17 C -0.070 4.070 18 C -0.074 4.074 19 N -0.169 5.169 20 C -0.284 4.284 21 C -0.187 4.187 22 C -0.173 4.173 23 C -0.361 4.361 24 S 0.387 5.613 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.176 0.824 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.312 -11.994 8.617 17.459 hybrid contribution 1.025 2.321 0.684 2.628 sum -8.287 -9.673 9.302 15.772 Atomic orbital electron populations 1.22080 0.89837 1.03751 1.04761 1.19815 0.99301 0.99623 0.87909 0.87522 1.20657 0.78770 0.84652 0.85103 1.90650 1.41903 1.25622 1.86821 1.47773 1.59632 1.19802 1.04580 1.20108 0.92982 0.78845 1.00121 1.21593 0.93657 0.92094 1.50723 0.95651 1.25853 1.02652 0.96065 0.93757 1.70082 1.36180 1.01664 1.50905 0.85903 0.79555 0.79339 0.79510 1.18317 1.22187 1.14399 1.21151 0.96734 0.94244 0.88082 1.19732 1.01229 0.97033 0.89006 1.29283 0.91900 0.92351 0.93839 1.81212 1.10314 1.11957 1.13454 1.24124 1.05976 0.98057 1.00248 1.20384 1.00649 1.02234 0.95417 1.20297 1.03336 0.93096 1.00597 1.26000 1.05985 1.02005 1.02113 1.84037 1.50335 1.09789 1.17139 0.89698 0.89533 0.91185 0.92319 0.91213 0.92526 0.89540 0.91518 0.86009 0.84030 0.84390 0.82418 0.79577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.66 71.98 0.62 -2.78 16 2 C -0.04 -1.32 2.27 -12.28 -0.03 -1.35 16 3 H 0.11 3.61 7.67 -2.39 -0.02 3.60 16 4 C 0.52 17.87 6.93 87.66 0.61 18.48 16 5 O -0.57 -21.83 14.78 -3.05 -0.05 -21.87 16 6 N -0.59 -19.60 2.47 -826.15 -2.04 -21.63 16 7 C 0.20 7.17 3.49 85.63 0.30 7.47 16 8 C -0.54 -26.54 9.93 25.60 0.25 -26.28 16 9 H 0.03 1.47 8.06 -2.91 -0.02 1.45 16 10 C 0.02 0.76 5.47 84.65 0.46 1.23 16 11 N -0.95 -54.56 13.96 21.45 0.30 -54.26 16 12 Si 0.93 36.05 27.47 68.60 1.88 37.93 16 13 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 14 H -0.30 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.22 -7.07 6.54 99.48 0.65 -6.42 16 16 C 0.12 3.64 5.37 86.38 0.46 4.10 16 17 C -0.03 -0.62 5.99 28.79 0.17 -0.45 16 18 C 0.24 6.36 15.43 89.44 1.38 7.74 16 19 N -0.49 -15.65 18.54 20.01 0.37 -15.28 16 20 C -0.17 -4.92 4.65 24.59 0.11 -4.81 16 21 C -0.16 -4.39 10.01 21.22 0.21 -4.18 16 22 C -0.14 -3.37 10.18 21.21 0.22 -3.15 16 23 C -0.23 -5.02 11.23 66.72 0.75 -4.27 16 24 S 0.12 3.20 21.78 -56.49 -1.23 1.97 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.89 5.43 -2.39 -0.01 1.88 16 27 H 0.07 1.47 7.65 -2.39 -0.02 1.45 16 28 H 0.06 1.88 7.18 -2.39 -0.02 1.87 16 29 H 0.07 2.25 3.55 -2.38 -0.01 2.24 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 32 H 0.07 2.18 7.52 -2.39 -0.02 2.17 16 33 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 36 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.19 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -66.95 331.34 5.80 -61.15 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 1.03 Total: 20.25 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.53 Total: -8.26 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -1.37 Total: -91.17 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 1.88 Total: 37.93 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.23 Total: 1.97 kcal Total: -66.95 5.80 -61.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265677032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.514 kcal (2) G-P(sol) polarization free energy of solvation -66.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds