Wall clock time and date at job start Tue Mar 31 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48497 * 109.47123 * 240.00221 * 3 2 1 5 5 H 1.48496 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47043 * 120.00099 * 3 2 1 7 7 C 1.38814 * 119.99550 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99615 * 196.27905 * 7 2 1 9 9 N 1.36929 * 120.00465 * 16.27639 * 7 2 1 10 10 C 1.46967 * 120.59584 * 211.79253 * 9 7 2 11 11 C 1.53376 * 108.63300 * 235.20077 * 10 9 7 12 12 N 1.46960 * 108.63673 * 310.57979 * 11 10 9 13 13 C 1.34778 * 120.59096 * 235.20699 * 12 11 10 14 14 O 1.21761 * 120.00370 * 5.25696 * 13 12 11 15 15 C 1.41663 * 120.00220 * 185.26771 * 13 12 11 16 16 C 1.35247 * 120.00136 * 184.03523 * 15 13 12 17 17 C 1.46690 * 119.99540 * 179.97438 * 16 15 13 18 18 C 1.44533 * 123.49693 * 179.97438 * 17 16 15 19 19 C 1.32733 * 113.09343 * 179.97438 * 18 17 16 20 20 S 1.75498 * 110.63848 * 359.97438 * 19 18 17 21 21 C 1.36288 * 123.50585 * 359.97309 * 17 16 15 22 22 C 1.46962 * 118.81732 * 55.47040 * 12 11 10 23 23 C 1.46964 * 120.59350 * 31.76420 * 9 7 2 24 24 H 0.96996 * 119.99595 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.61235 * 115.46193 * 10 9 7 26 26 H 1.08993 * 109.75387 * 355.02680 * 10 9 7 27 27 H 1.09002 * 109.61189 * 190.82767 * 11 10 9 28 28 H 1.09002 * 109.60379 * 70.31843 * 11 10 9 29 29 H 1.08003 * 119.99819 * 4.02692 * 15 13 12 30 30 H 1.07993 * 119.99971 * 359.97438 * 16 15 13 31 31 H 1.08007 * 123.45536 * 0.04385 * 18 17 16 32 32 H 1.07997 * 124.68577 * 180.26511 * 19 18 17 33 33 H 1.07998 * 124.60064 * 0.03569 * 21 17 16 34 34 H 1.09000 * 109.60747 * 64.26972 * 22 12 11 35 35 H 1.08996 * 109.61253 * 184.77904 * 22 12 11 36 36 H 1.08999 * 109.61606 * 244.54203 * 23 9 7 37 37 H 1.09002 * 109.61040 * 5.05676 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0578 -1.2211 0.2617 9 7 1.3667 -2.3642 -0.3334 10 6 1.7659 -3.6411 0.2750 11 6 2.0928 -4.6365 -0.8451 12 7 0.9903 -4.6289 -1.8168 13 6 0.3568 -5.7725 -2.1444 14 8 0.6309 -6.8079 -1.5651 15 6 -0.6278 -5.7702 -3.1629 16 6 -1.3211 -6.8989 -3.4358 17 6 -2.3410 -6.8962 -4.4901 18 6 -3.1250 -8.0576 -4.8445 19 6 -3.9874 -7.8238 -5.8260 20 16 -3.8765 -6.1567 -6.3629 21 6 -2.6479 -5.7984 -5.2372 22 6 0.5946 -3.3529 -2.4292 23 6 0.2641 -2.3566 -1.3050 24 1 -0.4849 0.8400 0.0004 25 1 0.9477 -4.0289 0.8817 26 1 2.6462 -3.4920 0.9002 27 1 2.2036 -5.6363 -0.4252 28 1 3.0180 -4.3401 -1.3394 29 1 -0.8248 -4.8671 -3.7214 30 1 -1.1239 -7.8021 -2.8775 31 1 -3.0205 -9.0171 -4.3597 32 1 -4.6672 -8.5569 -6.2344 33 1 -2.1769 -4.8325 -5.1301 34 1 1.4156 -2.9672 -3.0337 35 1 -0.2842 -3.5048 -3.0557 36 1 -0.6611 -2.6530 -0.8107 37 1 0.1533 -1.3569 -1.7249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265756843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:09 Heat of formation + Delta-G solvation = 49.204139 kcal Electronic energy + Delta-G solvation = -20466.557501 eV Core-core repulsion = 17337.029058 eV Total energy + Delta-G solvation = -3129.528444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80115 -37.99972 -36.77228 -33.84064 -33.16439 -31.33688 -30.20253 -29.12178 -27.11140 -25.42227 -23.66879 -22.93341 -21.85203 -20.16084 -18.99344 -18.53234 -17.98277 -16.96454 -16.17196 -15.64411 -15.13638 -14.75809 -14.66753 -13.76022 -13.70788 -13.54811 -13.43389 -13.33088 -13.22630 -12.72687 -12.51572 -12.40098 -11.99213 -11.45532 -11.30613 -11.02259 -10.81847 -10.75741 -10.50921 -10.25886 -10.23218 -10.07798 -9.85292 -9.39815 -9.13126 -8.59546 -8.29212 -7.99865 -6.67234 -5.87325 -3.34820 0.46217 1.36785 1.40433 1.79099 2.71733 3.33708 3.39625 3.40461 3.54515 3.76698 4.42824 4.52330 4.79139 4.97733 5.07352 5.20441 5.30724 5.41821 5.49368 5.56604 5.77810 5.82623 5.87446 5.94118 6.10867 6.12565 6.17169 6.31789 6.38126 6.46724 6.51044 6.82182 6.94973 7.21355 7.40580 7.72017 7.94942 8.36795 8.60004 9.10952 9.72636 10.32379 11.20406 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.003431 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.248124 B = 8159.882002 C = 9204.450946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.592 5.592 13 C 0.543 3.457 14 O -0.568 6.568 15 C -0.205 4.205 16 C -0.004 4.004 17 C -0.095 4.095 18 C -0.111 4.111 19 C -0.234 4.234 20 S 0.164 5.836 21 C -0.230 4.230 22 C 0.078 3.922 23 C 0.161 3.839 24 H 0.256 0.744 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -12.301 -12.941 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.005 3.995 11 C -0.029 4.029 12 N -0.322 5.322 13 C 0.335 3.665 14 O -0.451 6.451 15 C -0.228 4.228 16 C -0.026 4.026 17 C -0.108 4.108 18 C -0.141 4.141 19 C -0.369 4.369 20 S 0.430 5.570 21 C -0.366 4.366 22 C -0.046 4.046 23 C 0.034 3.966 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.606 -11.791 -13.734 19.634 hybrid contribution 1.130 0.293 1.115 1.615 sum -6.476 -11.497 -12.618 18.258 Atomic orbital electron populations 1.70013 1.05350 1.25871 1.53166 1.25164 0.95300 0.98626 1.00144 0.86343 0.78927 0.83067 0.78244 1.20889 1.21581 1.20763 1.19131 0.92298 0.84496 1.42996 0.91679 1.43936 1.39227 1.02584 1.45553 1.21303 0.98522 0.86977 0.92721 1.22201 0.88314 1.01057 0.91338 1.47981 1.34524 1.07372 1.42373 1.17027 0.82364 0.83524 0.83588 1.90758 1.67189 1.31834 1.55307 1.22146 0.99862 0.99599 1.01161 1.21927 0.90231 0.98373 0.92115 1.19428 0.99763 0.92589 0.99066 1.21350 0.95940 0.99017 0.97776 1.25466 1.06636 1.00442 1.04386 1.83035 1.33607 1.04783 1.35560 1.25681 1.04671 1.03649 1.02634 1.22848 0.99496 0.84384 0.97891 1.21193 0.89908 0.97471 0.88009 0.93424 0.95850 0.91538 0.89913 0.91978 0.85433 0.84551 0.83358 0.81733 0.81293 0.91783 0.90942 0.95664 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 11.40 55.49 0.63 -24.76 16 2 C 0.01 0.19 4.90 -17.43 -0.09 0.10 16 3 Si 0.90 21.06 29.58 -169.99 -5.03 16.03 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.94 9.54 -15.06 -0.14 -7.09 16 8 H 0.07 1.71 7.88 -52.48 -0.41 1.29 16 9 N -0.59 -14.55 2.95 -171.76 -0.51 -15.06 16 10 C 0.13 2.83 6.67 -3.59 -0.02 2.80 16 11 C 0.10 1.81 6.60 -3.60 -0.02 1.78 16 12 N -0.59 -11.11 2.94 -175.61 -0.52 -11.62 16 13 C 0.54 9.94 7.45 -14.95 -0.11 9.83 16 14 O -0.57 -11.80 15.52 5.13 0.08 -11.72 16 15 C -0.21 -3.02 8.58 -39.34 -0.34 -3.36 16 16 C 0.00 -0.05 9.57 -37.24 -0.36 -0.41 16 17 C -0.09 -1.07 5.97 -104.71 -0.62 -1.70 16 18 C -0.11 -1.05 10.38 -38.98 -0.40 -1.46 16 19 C -0.23 -1.90 11.11 28.85 0.32 -1.58 16 20 S 0.16 1.37 23.02 -107.50 -2.47 -1.11 16 21 C -0.23 -2.37 10.26 30.03 0.31 -2.06 16 22 C 0.08 1.41 6.49 -3.37 -0.02 1.39 16 23 C 0.16 3.67 5.50 -3.37 -0.02 3.65 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.36 7.94 -51.93 -0.41 0.94 16 27 H 0.08 1.54 6.99 -51.93 -0.36 1.18 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.13 1.64 4.34 -52.48 -0.23 1.41 16 30 H 0.14 1.82 7.46 -52.49 -0.39 1.43 16 31 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.17 1.59 6.81 -52.49 -0.36 1.23 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.09 5.37 -51.93 -0.28 0.81 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.32 6.24 -51.93 -0.32 2.00 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -31.28 319.77 -8.96 -40.24 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.44 Total: 1.28 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.52 Total: 1.91 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.39 Total: -51.45 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.47 Total: -1.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.28 -8.96 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265756843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.445 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds