Wall clock time and date at job start Tue Mar 31 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48497 * 109.47123 * 240.00221 * 3 2 1 5 5 H 1.48496 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47043 * 120.00099 * 3 2 1 7 7 C 1.38814 * 119.99550 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99615 * 196.27905 * 7 2 1 9 9 N 1.36929 * 120.00465 * 16.27639 * 7 2 1 10 10 C 1.46967 * 120.59584 * 211.79253 * 9 7 2 11 11 C 1.53376 * 108.63300 * 235.20077 * 10 9 7 12 12 N 1.46960 * 108.63673 * 310.57979 * 11 10 9 13 13 C 1.34778 * 120.59096 * 235.20699 * 12 11 10 14 14 O 1.21761 * 120.00370 * 5.25696 * 13 12 11 15 15 C 1.41663 * 120.00220 * 185.26771 * 13 12 11 16 16 C 1.35247 * 120.00136 * 184.03523 * 15 13 12 17 17 C 1.46690 * 119.99540 * 179.97438 * 16 15 13 18 18 C 1.44533 * 123.49693 * 179.97438 * 17 16 15 19 19 C 1.32733 * 113.09343 * 179.97438 * 18 17 16 20 20 S 1.75498 * 110.63848 * 359.97438 * 19 18 17 21 21 C 1.36288 * 123.50585 * 359.97309 * 17 16 15 22 22 C 1.46962 * 118.81732 * 55.47040 * 12 11 10 23 23 C 1.46964 * 120.59350 * 31.76420 * 9 7 2 24 24 H 0.96996 * 119.99595 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.61235 * 115.46193 * 10 9 7 26 26 H 1.08993 * 109.75387 * 355.02680 * 10 9 7 27 27 H 1.09002 * 109.61189 * 190.82767 * 11 10 9 28 28 H 1.09002 * 109.60379 * 70.31843 * 11 10 9 29 29 H 1.08003 * 119.99819 * 4.02692 * 15 13 12 30 30 H 1.07993 * 119.99971 * 359.97438 * 16 15 13 31 31 H 1.08007 * 123.45536 * 0.04385 * 18 17 16 32 32 H 1.07997 * 124.68577 * 180.26511 * 19 18 17 33 33 H 1.07998 * 124.60064 * 0.03569 * 21 17 16 34 34 H 1.09000 * 109.60747 * 64.26972 * 22 12 11 35 35 H 1.08996 * 109.61253 * 184.77904 * 22 12 11 36 36 H 1.08999 * 109.61606 * 244.54203 * 23 9 7 37 37 H 1.09002 * 109.61040 * 5.05676 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0578 -1.2211 0.2617 9 7 1.3667 -2.3642 -0.3334 10 6 1.7659 -3.6411 0.2750 11 6 2.0928 -4.6365 -0.8451 12 7 0.9903 -4.6289 -1.8168 13 6 0.3568 -5.7725 -2.1444 14 8 0.6309 -6.8079 -1.5651 15 6 -0.6278 -5.7702 -3.1629 16 6 -1.3211 -6.8989 -3.4358 17 6 -2.3410 -6.8962 -4.4901 18 6 -3.1250 -8.0576 -4.8445 19 6 -3.9874 -7.8238 -5.8260 20 16 -3.8765 -6.1567 -6.3629 21 6 -2.6479 -5.7984 -5.2372 22 6 0.5946 -3.3529 -2.4292 23 6 0.2641 -2.3566 -1.3050 24 1 -0.4849 0.8400 0.0004 25 1 0.9477 -4.0289 0.8817 26 1 2.6462 -3.4920 0.9002 27 1 2.2036 -5.6363 -0.4252 28 1 3.0180 -4.3401 -1.3394 29 1 -0.8248 -4.8671 -3.7214 30 1 -1.1239 -7.8021 -2.8775 31 1 -3.0205 -9.0171 -4.3597 32 1 -4.6672 -8.5569 -6.2344 33 1 -2.1769 -4.8325 -5.1301 34 1 1.4156 -2.9672 -3.0337 35 1 -0.2842 -3.5048 -3.0557 36 1 -0.6611 -2.6530 -0.8107 37 1 0.1533 -1.3569 -1.7249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265756843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:08 Heat of formation + Delta-G solvation = 31.240183 kcal Electronic energy + Delta-G solvation = -20467.336477 eV Core-core repulsion = 17337.029058 eV Total energy + Delta-G solvation = -3130.307419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23302 -38.91558 -38.33928 -35.60068 -34.26618 -33.12244 -31.87148 -30.04151 -28.76009 -26.63325 -25.31919 -24.46358 -23.11459 -21.58820 -20.14091 -19.55337 -19.28030 -18.29608 -17.70941 -16.99144 -16.69136 -16.24207 -15.99882 -15.49206 -15.24831 -15.11867 -14.87451 -14.37732 -14.22434 -13.94866 -13.54486 -13.44900 -13.29412 -13.22157 -12.74042 -12.59260 -12.51800 -12.25711 -12.04988 -11.91172 -11.72427 -11.68242 -11.20301 -10.89161 -10.58938 -9.87549 -9.78930 -8.90734 -8.61358 -7.89856 -5.41989 -0.47275 0.52996 0.72563 1.08119 1.49563 1.50757 1.58155 1.77693 2.11453 2.49010 2.52798 3.24968 3.56417 3.62730 3.86371 4.04338 4.18040 4.22769 4.32281 4.38018 4.44127 4.56415 4.64689 4.66892 4.74761 4.81218 4.83439 4.99806 5.08360 5.18945 5.26102 5.41651 5.51666 5.53786 5.62276 5.65428 6.35924 6.50602 7.09932 7.17480 7.76081 8.32707 9.15144 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.003431 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.248124 B = 8159.882002 C = 9204.450946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.042 4.042 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.272 4.272 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.132 3.868 11 C 0.105 3.895 12 N -0.600 5.600 13 C 0.544 3.456 14 O -0.600 6.600 15 C -0.237 4.237 16 C 0.026 3.974 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.231 4.231 20 S 0.202 5.798 21 C -0.236 4.236 22 C 0.094 3.906 23 C 0.167 3.833 24 H 0.253 0.747 25 H 0.005 0.995 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.131 0.869 31 H 0.162 0.838 32 H 0.193 0.807 33 H 0.176 0.824 34 H 0.072 0.928 35 H 0.106 0.894 36 H -0.002 1.002 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 -12.834 -15.011 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.798 3.202 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.402 4.402 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.006 3.994 11 C -0.019 4.019 12 N -0.331 5.331 13 C 0.338 3.662 14 O -0.486 6.486 15 C -0.259 4.259 16 C 0.004 3.996 17 C -0.137 4.137 18 C -0.154 4.154 19 C -0.366 4.366 20 S 0.469 5.531 21 C -0.373 4.373 22 C -0.029 4.029 23 C 0.040 3.960 24 H 0.062 0.938 25 H 0.023 0.977 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.163 0.837 30 H 0.148 0.852 31 H 0.180 0.820 32 H 0.210 0.790 33 H 0.193 0.807 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.016 0.984 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.123 -12.346 -15.823 21.651 hybrid contribution 1.154 0.355 1.704 2.089 sum -6.969 -11.990 -14.119 19.791 Atomic orbital electron populations 1.70164 1.06744 1.26277 1.54476 1.25908 0.96027 1.01650 1.00220 0.85304 0.77556 0.78883 0.78414 1.19989 1.21951 1.20378 1.19454 0.92622 0.85515 1.42590 0.91506 1.44213 1.39418 1.03048 1.46479 1.21352 0.98017 0.86430 0.93595 1.22010 0.88972 1.00192 0.90738 1.48037 1.34672 1.07788 1.42575 1.17515 0.82287 0.82703 0.83698 1.90732 1.68303 1.32780 1.56763 1.21980 1.00811 1.01177 1.01895 1.22044 0.89041 0.97391 0.91162 1.19482 1.00580 0.94032 0.99629 1.21514 0.96182 0.99136 0.98558 1.25849 1.06269 1.00913 1.03543 1.82979 1.31675 1.04666 1.33821 1.25985 1.04950 1.03749 1.02646 1.22638 1.01233 0.82886 0.96175 1.21031 0.88515 0.97587 0.88819 0.93827 0.97700 0.90855 0.89617 0.90921 0.83668 0.85167 0.82025 0.79001 0.80683 0.90949 0.87609 0.98419 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.61 11.40 21.65 0.25 -53.36 16 2 C -0.04 -2.26 4.90 84.86 0.42 -1.85 16 3 Si 0.97 43.45 29.58 68.60 2.03 45.48 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.27 -14.66 9.54 84.04 0.80 -13.85 16 8 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 9 N -0.61 -30.46 2.95 -697.34 -2.06 -32.51 16 10 C 0.13 5.78 6.67 86.42 0.58 6.36 16 11 C 0.11 3.98 6.60 86.42 0.57 4.55 16 12 N -0.60 -22.31 2.94 -827.69 -2.43 -24.74 16 13 C 0.54 19.73 7.45 85.09 0.63 20.37 16 14 O -0.60 -25.07 15.52 -4.55 -0.07 -25.14 16 15 C -0.24 -6.73 8.58 22.43 0.19 -6.54 16 16 C 0.03 0.66 9.57 23.79 0.23 0.89 16 17 C -0.12 -2.56 5.97 -19.92 -0.12 -2.68 16 18 C -0.13 -2.07 10.38 22.70 0.24 -1.83 16 19 C -0.23 -3.00 11.11 66.65 0.74 -2.26 16 20 S 0.20 2.77 23.02 -56.49 -1.30 1.47 16 21 C -0.24 -4.34 10.26 67.37 0.69 -3.65 16 22 C 0.09 3.35 6.49 86.57 0.56 3.91 16 23 C 0.17 7.76 5.50 86.57 0.48 8.23 16 24 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.07 3.03 7.94 -2.39 -0.02 3.01 16 27 H 0.09 3.19 6.99 -2.39 -0.02 3.18 16 28 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.15 3.48 4.34 -2.91 -0.01 3.47 16 30 H 0.13 3.42 7.46 -2.91 -0.02 3.40 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.18 2.90 6.81 -2.91 -0.02 2.88 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.11 3.03 5.37 -2.39 -0.01 3.02 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.07 3.62 6.24 -2.39 -0.01 3.60 16 Total: -1.00 -67.86 319.77 3.51 -64.35 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.09 Total: 12.79 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.01 Total: 11.65 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -4.24 Total: -110.61 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.07 Total: -25.14 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.30 Total: 1.47 kcal Total: -67.86 3.51 -64.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265756843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.594 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds