Wall clock time and date at job start Tue Mar 31 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46894 * 109.47028 * 2 1 4 4 C 1.46899 * 110.99966 * 300.89577 * 3 2 1 5 5 C 1.50702 * 109.47529 * 293.95629 * 4 3 2 6 6 H 1.07997 * 119.99757 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00154 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99973 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00197 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46662 * 89.99887 * 9 7 5 11 11 H 1.48494 * 109.47315 * 210.00153 * 9 7 5 12 12 H 1.48503 * 109.46762 * 330.00455 * 9 7 5 13 13 C 1.46902 * 111.00451 * 64.85541 * 3 2 1 14 14 C 1.50695 * 109.47014 * 75.62144 * 13 3 2 15 15 C 1.40794 * 126.66898 * 94.80133 * 14 13 3 16 16 C 1.37264 * 103.86168 * 179.85718 * 15 14 13 17 17 C 1.47016 * 126.96296 * 180.13050 * 16 15 14 18 18 C 1.36188 * 125.33529 * 180.02562 * 17 16 15 19 19 C 1.37715 * 114.44746 * 179.82691 * 18 17 16 20 20 C 1.33731 * 115.18907 * 0.46227 * 19 18 17 21 21 S 1.75823 * 109.96202 * 359.74894 * 20 19 18 22 22 O 1.34615 * 106.06785 * 0.39501 * 16 15 14 23 23 N 1.20893 * 111.39918 * 359.73082 * 22 16 15 24 24 H 1.09007 * 109.47234 * 180.43197 * 1 2 3 25 25 H 1.09003 * 109.47203 * 300.42963 * 1 2 3 26 26 H 1.09000 * 109.47207 * 60.43001 * 1 2 3 27 27 H 1.09001 * 109.47329 * 119.99653 * 2 1 3 28 28 H 1.09001 * 109.47013 * 239.99645 * 2 1 3 29 29 H 1.09002 * 109.46730 * 53.95733 * 4 3 2 30 30 H 1.09004 * 109.47272 * 173.95321 * 4 3 2 31 31 H 0.97000 * 120.00104 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47087 * 195.62911 * 13 3 2 33 33 H 1.09001 * 109.46537 * 315.62524 * 13 3 2 34 34 H 1.07994 * 128.06497 * 359.96761 * 15 14 13 35 35 H 1.08009 * 122.77751 * 359.97438 * 18 17 16 36 36 H 1.07997 * 122.40568 * 180.18446 * 19 18 17 37 37 H 1.08001 * 125.01767 * 179.76955 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5311 2.1160 -1.1768 5 6 2.1349 1.5223 -2.4234 6 1 2.8133 0.6852 -2.3490 7 6 1.8204 2.0469 -3.6590 8 7 0.9939 3.0659 -3.7497 9 14 2.5694 1.3114 -5.2042 10 1 1.6884 0.2306 -5.7150 11 1 2.7075 2.3679 -6.2386 12 1 3.9075 0.7510 -4.8872 13 6 1.6457 2.0756 1.2414 14 6 2.5320 1.6039 2.3652 15 6 3.7156 2.2181 2.8170 16 6 4.1334 1.4104 3.8453 17 6 5.3300 1.5901 4.6803 18 6 5.7140 0.7658 5.6941 19 6 6.8769 1.1445 6.3272 20 6 7.4420 2.2623 5.8586 21 16 6.4858 2.9075 4.5316 22 8 3.2287 0.4172 3.9301 23 7 2.3550 0.5447 3.1044 24 1 -0.3634 -1.0277 0.0077 25 1 -0.3634 0.5205 0.8861 26 1 -0.3633 0.5071 -0.8938 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 0.4450 2.0393 -1.2271 30 1 1.8180 3.1646 -1.0981 31 1 0.7723 3.4348 -4.6191 32 1 1.7670 3.1508 1.1097 33 1 0.6058 1.8540 1.4814 34 1 4.1843 3.1163 2.4431 35 1 5.1543 -0.1137 5.9766 36 1 7.2996 0.5818 7.1464 37 1 8.3515 2.7034 6.2389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267101434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:21 Heat of formation + Delta-G solvation = 103.077422 kcal Electronic energy + Delta-G solvation = -20266.520806 eV Core-core repulsion = 17139.328484 eV Total energy + Delta-G solvation = -3127.192323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.66862 -37.94966 -37.46035 -34.02448 -32.78085 -32.37973 -29.55820 -28.72364 -27.82514 -25.21126 -24.56380 -23.35603 -22.75280 -21.23095 -19.76031 -18.79777 -18.02027 -17.43760 -16.52178 -16.21234 -15.62736 -15.01841 -14.89938 -14.42840 -14.04452 -13.44675 -13.40594 -13.29214 -12.96444 -12.85158 -12.49910 -12.06169 -11.82544 -11.69694 -11.24373 -11.12629 -11.02665 -10.84302 -10.71170 -10.55058 -10.31774 -10.03453 -10.00691 -9.70321 -9.21609 -8.79764 -8.44655 -8.33822 -7.26425 -6.03919 -4.04662 0.21855 1.12000 1.65085 1.75575 2.36695 2.71056 3.24480 3.31553 3.37836 3.42580 4.33959 4.42280 4.44782 4.75534 5.01671 5.11548 5.24617 5.28254 5.31375 5.32513 5.59750 5.73556 5.81490 5.88074 5.94690 5.99560 6.09040 6.13700 6.19996 6.25916 6.51093 6.69536 6.93500 7.25336 7.39111 7.77709 8.04110 8.15737 8.43006 8.50673 9.02476 9.59342 11.06890 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.003394 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.500186 B = 8248.273007 C = 8966.429268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.060 3.940 3 N -0.529 5.529 4 C 0.190 3.810 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.119 3.881 14 C 0.054 3.946 15 C -0.193 4.193 16 C 0.019 3.981 17 C -0.124 4.124 18 C -0.113 4.113 19 C -0.133 4.133 20 C -0.218 4.218 21 S 0.170 5.830 22 O 0.108 5.892 23 N -0.359 5.359 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.003 0.997 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 -0.910 19.858 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.068 4.068 3 N -0.254 5.254 4 C 0.065 3.935 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.010 4.010 14 C -0.104 4.104 15 C -0.216 4.216 16 C -0.046 4.046 17 C -0.243 4.243 18 C -0.145 4.145 19 C -0.164 4.164 20 C -0.354 4.354 21 S 0.435 5.565 22 O 0.039 5.961 23 N -0.062 5.062 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.020 0.980 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.189 0.811 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.356 -0.467 18.759 20.968 hybrid contribution -0.135 -0.874 -0.138 0.895 sum 9.221 -1.341 18.621 20.822 Atomic orbital electron populations 1.22353 0.99155 1.01070 1.01929 1.21985 0.92379 0.91011 1.01471 1.62284 1.59680 1.02283 1.01153 1.19838 0.94269 0.93599 0.85774 1.21119 1.26921 1.16196 0.90060 0.91945 1.24961 0.95338 0.95112 0.99116 1.69952 1.35131 1.24201 1.24588 0.86515 0.79681 0.78696 0.82660 1.20756 1.21256 1.19781 1.20478 0.94265 0.98942 0.87325 1.23496 0.96769 0.91891 0.98266 1.22619 0.97739 1.03528 0.97726 1.21253 0.93015 0.91780 0.98519 1.21864 0.98053 1.02536 1.01823 1.20705 0.97485 1.00877 0.95438 1.20009 0.96275 0.97594 1.02474 1.25909 1.05467 1.01691 1.02350 1.84341 1.15775 1.24175 1.32171 1.84948 1.26219 1.40858 1.44042 1.73807 1.09494 1.19637 1.03298 0.93353 0.93749 0.91072 0.92733 0.90128 0.97954 0.95217 0.92931 0.89113 0.93009 0.81060 0.83418 0.83759 0.81359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 9.27 37.16 0.34 -3.21 16 2 C 0.06 1.24 5.75 -3.83 -0.02 1.21 16 3 N -0.53 -11.56 4.62 -237.52 -1.10 -12.65 16 4 C 0.19 4.83 4.44 -4.98 -0.02 4.80 16 5 C -0.50 -14.02 8.53 -34.44 -0.29 -14.32 16 6 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.12 2.21 5.47 -4.98 -0.03 2.18 16 14 C 0.05 0.93 6.34 -82.25 -0.52 0.41 16 15 C -0.19 -2.91 10.92 -38.97 -0.43 -3.34 16 16 C 0.02 0.27 7.29 -36.38 -0.27 0.01 16 17 C -0.12 -1.44 6.45 -36.76 -0.24 -1.67 16 18 C -0.11 -1.10 10.17 -40.51 -0.41 -1.51 16 19 C -0.13 -1.04 10.15 -41.35 -0.42 -1.46 16 20 C -0.22 -1.63 11.21 29.15 0.33 -1.30 16 21 S 0.17 1.60 23.12 -107.50 -2.49 -0.89 16 22 O 0.11 1.68 11.23 15.62 0.18 1.86 16 23 N -0.36 -6.25 11.22 33.52 0.38 -5.88 16 24 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.04 0.80 6.23 -51.93 -0.32 0.48 16 26 H 0.07 1.52 6.28 -51.93 -0.33 1.19 16 27 H 0.05 1.08 6.86 -51.93 -0.36 0.73 16 28 H 0.08 1.77 6.88 -51.93 -0.36 1.42 16 29 H 0.00 0.07 5.98 -51.93 -0.31 -0.24 16 30 H 0.03 0.80 7.83 -51.93 -0.41 0.39 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.09 1.59 7.74 -51.93 -0.40 1.19 16 33 H 0.05 0.95 5.87 -51.93 -0.30 0.64 16 34 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -30.47 325.23 -8.89 -39.37 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.41 Total: -0.97 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.07 Total: -16.72 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.01 Total: -44.15 kcal Atomic # 8 Polarization: 1.68 SS G_CDS: 0.18 Total: 1.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.49 Total: -0.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.47 -8.89 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267101434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.447 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds