Wall clock time and date at job start Tue Mar 31 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46894 * 109.47028 * 2 1 4 4 C 1.46899 * 110.99966 * 300.89577 * 3 2 1 5 5 C 1.50702 * 109.47529 * 293.95629 * 4 3 2 6 6 H 1.07997 * 119.99757 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00154 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99973 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00197 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46662 * 89.99887 * 9 7 5 11 11 H 1.48494 * 109.47315 * 210.00153 * 9 7 5 12 12 H 1.48503 * 109.46762 * 330.00455 * 9 7 5 13 13 C 1.46902 * 111.00451 * 64.85541 * 3 2 1 14 14 C 1.50695 * 109.47014 * 75.62144 * 13 3 2 15 15 C 1.40794 * 126.66898 * 94.80133 * 14 13 3 16 16 C 1.37264 * 103.86168 * 179.85718 * 15 14 13 17 17 C 1.47016 * 126.96296 * 180.13050 * 16 15 14 18 18 C 1.36188 * 125.33529 * 180.02562 * 17 16 15 19 19 C 1.37715 * 114.44746 * 179.82691 * 18 17 16 20 20 C 1.33731 * 115.18907 * 0.46227 * 19 18 17 21 21 S 1.75823 * 109.96202 * 359.74894 * 20 19 18 22 22 O 1.34615 * 106.06785 * 0.39501 * 16 15 14 23 23 N 1.20893 * 111.39918 * 359.73082 * 22 16 15 24 24 H 1.09007 * 109.47234 * 180.43197 * 1 2 3 25 25 H 1.09003 * 109.47203 * 300.42963 * 1 2 3 26 26 H 1.09000 * 109.47207 * 60.43001 * 1 2 3 27 27 H 1.09001 * 109.47329 * 119.99653 * 2 1 3 28 28 H 1.09001 * 109.47013 * 239.99645 * 2 1 3 29 29 H 1.09002 * 109.46730 * 53.95733 * 4 3 2 30 30 H 1.09004 * 109.47272 * 173.95321 * 4 3 2 31 31 H 0.97000 * 120.00104 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47087 * 195.62911 * 13 3 2 33 33 H 1.09001 * 109.46537 * 315.62524 * 13 3 2 34 34 H 1.07994 * 128.06497 * 359.96761 * 15 14 13 35 35 H 1.08009 * 122.77751 * 359.97438 * 18 17 16 36 36 H 1.07997 * 122.40568 * 180.18446 * 19 18 17 37 37 H 1.08001 * 125.01767 * 179.76955 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5311 2.1160 -1.1768 5 6 2.1349 1.5223 -2.4234 6 1 2.8133 0.6852 -2.3490 7 6 1.8204 2.0469 -3.6590 8 7 0.9939 3.0659 -3.7497 9 14 2.5694 1.3114 -5.2042 10 1 1.6884 0.2306 -5.7150 11 1 2.7075 2.3679 -6.2386 12 1 3.9075 0.7510 -4.8872 13 6 1.6457 2.0756 1.2414 14 6 2.5320 1.6039 2.3652 15 6 3.7156 2.2181 2.8170 16 6 4.1334 1.4104 3.8453 17 6 5.3300 1.5901 4.6803 18 6 5.7140 0.7658 5.6941 19 6 6.8769 1.1445 6.3272 20 6 7.4420 2.2623 5.8586 21 16 6.4858 2.9075 4.5316 22 8 3.2287 0.4172 3.9301 23 7 2.3550 0.5447 3.1044 24 1 -0.3634 -1.0277 0.0077 25 1 -0.3634 0.5205 0.8861 26 1 -0.3633 0.5071 -0.8938 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 0.4450 2.0393 -1.2271 30 1 1.8180 3.1646 -1.0981 31 1 0.7723 3.4348 -4.6191 32 1 1.7670 3.1508 1.1097 33 1 0.6058 1.8540 1.4814 34 1 4.1843 3.1163 2.4431 35 1 5.1543 -0.1137 5.9766 36 1 7.2996 0.5818 7.1464 37 1 8.3515 2.7034 6.2389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267101434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:20 Heat of formation + Delta-G solvation = 85.179864 kcal Electronic energy + Delta-G solvation = -20267.296903 eV Core-core repulsion = 17139.328484 eV Total energy + Delta-G solvation = -3127.968419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.90438 -39.17362 -38.64049 -35.43733 -34.55980 -33.67871 -31.22165 -29.69338 -29.57138 -26.88304 -25.40451 -25.12348 -24.13615 -22.39519 -21.22322 -19.71503 -19.07563 -18.70260 -18.33876 -17.57185 -16.85437 -16.64396 -16.43486 -15.89304 -15.44969 -14.78374 -14.73469 -14.35943 -14.13981 -13.95993 -13.57219 -13.45663 -13.23911 -13.16539 -13.08347 -12.81221 -12.61873 -12.49864 -12.11908 -11.92236 -11.77210 -11.65330 -11.41457 -11.24699 -11.07986 -10.59360 -9.49784 -9.23635 -9.04496 -8.19450 -6.28043 -0.61744 0.36721 0.74889 0.98882 1.19976 1.41131 1.41720 1.53424 1.90196 2.18360 2.40955 3.04293 3.13594 3.33582 3.46709 3.92201 4.08944 4.19207 4.23309 4.27470 4.35867 4.47476 4.56675 4.61431 4.63984 4.69558 4.88774 4.91325 4.98911 5.10591 5.18056 5.30439 5.30835 5.43663 5.46437 5.65692 6.03666 6.27524 6.55190 6.86061 7.21350 7.40672 8.91298 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.003394 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.500186 B = 8248.273007 C = 8966.429268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 N -0.538 5.538 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.123 3.877 14 C 0.039 3.961 15 C -0.212 4.212 16 C 0.040 3.960 17 C -0.171 4.171 18 C -0.097 4.097 19 C -0.144 4.144 20 C -0.193 4.193 21 S 0.162 5.838 22 O 0.107 5.893 23 N -0.379 5.379 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.062 0.938 29 H -0.015 1.015 30 H 0.009 0.991 31 H 0.264 0.736 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.184 0.816 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.766 -1.591 21.359 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.064 4.064 3 N -0.262 5.262 4 C 0.080 3.920 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.193 1.193 13 C -0.005 4.005 14 C -0.118 4.118 15 C -0.235 4.235 16 C -0.025 4.025 17 C -0.289 4.289 18 C -0.131 4.131 19 C -0.173 4.173 20 C -0.330 4.330 21 S 0.427 5.573 22 O 0.039 5.961 23 N -0.084 5.084 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.002 0.998 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.201 0.799 35 H 0.174 0.826 36 H 0.193 0.807 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 11.396 -1.154 20.274 23.286 hybrid contribution -0.632 -0.665 -0.400 1.001 sum 10.764 -1.819 19.875 22.675 Atomic orbital electron populations 1.22222 0.97924 1.02307 1.00939 1.21924 0.93365 0.90190 1.00968 1.62152 1.59979 1.02757 1.01340 1.19481 0.92932 0.92662 0.86885 1.21384 1.26950 1.16165 0.91338 0.92525 1.25796 0.95661 0.95426 1.02314 1.70063 1.36234 1.25367 1.25515 0.85464 0.78961 0.78059 0.78637 1.19972 1.20606 1.19251 1.20407 0.94782 0.98992 0.86350 1.23321 0.97535 0.92676 0.98272 1.22728 0.97523 1.04558 0.98651 1.21610 0.92836 0.90267 0.97801 1.21937 0.98503 1.04918 1.03524 1.21050 0.97699 1.00232 0.94083 1.20307 0.95615 0.98067 1.03277 1.26393 1.05484 1.00810 1.00293 1.84401 1.15731 1.23767 1.33412 1.84893 1.26315 1.41298 1.43610 1.73768 1.10544 1.20038 1.04032 0.91022 0.92854 0.93754 0.91744 0.91911 0.99754 0.97329 0.92683 0.88664 0.92852 0.79874 0.82641 0.80744 0.78152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.74 9.27 71.98 0.67 -6.07 16 2 C 0.06 2.66 5.75 86.30 0.50 3.16 16 3 N -0.54 -24.10 4.62 -905.38 -4.18 -28.28 16 4 C 0.21 10.87 4.44 85.56 0.38 11.25 16 5 C -0.52 -29.55 8.53 25.60 0.22 -29.33 16 6 H 0.06 3.22 7.10 -2.91 -0.02 3.20 16 7 C 0.01 0.35 5.46 84.65 0.46 0.82 16 8 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 9 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.12 4.69 5.47 85.56 0.47 5.16 16 14 C 0.04 1.37 6.34 43.40 0.28 1.65 16 15 C -0.21 -6.43 10.92 22.67 0.25 -6.18 16 16 C 0.04 1.11 7.29 24.34 0.18 1.29 16 17 C -0.17 -3.72 6.45 24.10 0.16 -3.57 16 18 C -0.10 -1.67 10.17 21.67 0.22 -1.45 16 19 C -0.14 -1.71 10.15 21.12 0.21 -1.50 16 20 C -0.19 -2.17 11.21 66.80 0.75 -1.42 16 21 S 0.16 2.75 23.12 -56.49 -1.31 1.44 16 22 O 0.11 3.32 11.23 66.09 0.74 4.06 16 23 N -0.38 -13.27 11.22 -48.66 -0.55 -13.82 16 24 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.05 1.93 6.23 -2.39 -0.01 1.91 16 26 H 0.04 1.93 6.28 -2.39 -0.01 1.92 16 27 H 0.06 2.57 6.86 -2.39 -0.02 2.55 16 28 H 0.06 2.82 6.88 -2.39 -0.02 2.80 16 29 H -0.02 -0.84 5.98 -2.39 -0.01 -0.86 16 30 H 0.01 0.49 7.83 -2.39 -0.02 0.47 16 31 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.10 3.46 7.74 -2.39 -0.02 3.44 16 33 H 0.05 1.99 5.87 -2.39 -0.01 1.98 16 34 H 0.18 4.89 8.06 -2.91 -0.02 4.86 16 35 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -66.19 325.23 2.84 -63.36 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.09 Total: 8.08 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 4.73 Total: -26.19 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -4.44 Total: -97.32 kcal Atomic # 8 Polarization: 3.32 SS G_CDS: 0.74 Total: 4.06 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.31 Total: 1.44 kcal Total: -66.19 2.84 -63.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267101434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.536 kcal (2) G-P(sol) polarization free energy of solvation -66.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds