Wall clock time and date at job start Tue Mar 31 2020 06:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46907 * 110.99846 * 306.04564 * 12 2 1 14 14 C 1.46894 * 111.00206 * 70.00284 * 12 2 1 15 15 C 1.50700 * 109.47269 * 169.99805 * 14 12 2 16 16 C 1.33554 * 122.06943 * 95.00175 * 15 14 12 17 17 S 1.76244 * 108.25141 * 180.02562 * 16 15 14 18 18 C 1.76165 * 89.85484 * 359.97438 * 17 16 15 19 19 C 1.47860 * 125.47981 * 179.97438 * 18 17 16 20 20 C 1.46855 * 127.14339 * 359.73351 * 19 18 17 21 21 C 1.34304 * 106.01881 * 179.83014 * 20 19 18 22 22 O 1.34179 * 109.05228 * 0.44211 * 21 20 19 23 23 C 1.34033 * 110.79107 * 359.70160 * 22 21 20 24 24 N 1.30249 * 109.04532 * 359.74366 * 18 17 16 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46867 * 60.00675 * 13 12 2 30 30 H 1.08998 * 109.46750 * 180.02562 * 13 12 2 31 31 H 1.08994 * 109.46944 * 299.99912 * 13 12 2 32 32 H 1.08998 * 109.46955 * 290.00099 * 14 12 2 33 33 H 1.08998 * 109.47049 * 49.99909 * 14 12 2 34 34 H 1.08001 * 125.87063 * 359.97438 * 16 15 14 35 35 H 1.07998 * 126.99107 * 0.02562 * 20 19 18 36 36 H 1.07997 * 125.47688 * 180.14187 * 21 20 19 37 37 H 1.08006 * 125.78773 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5794 16 6 1.8825 -1.3766 -4.4098 17 16 3.0536 -1.8613 -5.6344 18 6 4.2629 -0.8245 -4.8820 19 6 5.6543 -0.6492 -5.3505 20 6 6.2887 -1.2953 -6.5066 21 6 7.5492 -0.8332 -6.5439 22 8 7.7349 0.0159 -5.5217 23 6 6.6145 0.1397 -4.7965 24 7 3.7328 -0.2334 -3.8495 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1619 3.4844 29 1 0.3490 -1.9549 -1.3694 30 1 1.8140 -2.5261 -2.2040 31 1 1.7059 -2.6221 -0.4301 32 1 0.6815 0.1053 -2.6087 33 1 2.1026 1.1188 -2.2603 34 1 0.8599 -1.7172 -4.3420 35 1 5.8333 -1.9967 -7.1900 36 1 8.2952 -1.1054 -7.2759 37 1 6.4944 0.7600 -3.9206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267928149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:05 Heat of formation + Delta-G solvation = 72.956742 kcal Electronic energy + Delta-G solvation = -20345.963641 eV Core-core repulsion = 17217.465188 eV Total energy + Delta-G solvation = -3128.498453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.55762 -39.60543 -36.92617 -33.68884 -32.68798 -30.88972 -29.47533 -28.28920 -27.18644 -25.24462 -25.03832 -23.52915 -21.83457 -20.91353 -19.35722 -18.84307 -18.22499 -16.99184 -16.16811 -16.11168 -15.47979 -15.30118 -14.53691 -14.41717 -13.79787 -13.73047 -13.46510 -13.17484 -13.08473 -12.64563 -12.55610 -12.28169 -11.73449 -11.21289 -11.12487 -10.94145 -10.75537 -10.68029 -10.44826 -10.34402 -10.03424 -9.83478 -9.53111 -9.33775 -9.04842 -8.88112 -8.35976 -8.11876 -7.14123 -5.98586 -4.01901 0.52258 1.39435 1.67645 1.81405 2.29137 2.85973 3.24166 3.34855 3.38771 3.42537 3.93726 4.44485 4.64416 4.74243 5.05196 5.16504 5.31630 5.34086 5.39542 5.52882 5.62549 5.90591 5.95844 6.08022 6.13319 6.22216 6.37722 6.40370 6.66747 6.80950 6.87331 6.88640 7.10977 7.45442 7.71505 7.85407 7.94923 8.14691 8.38579 8.59800 9.03536 9.62799 11.08591 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.003700 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.725375 B = 7564.735559 C = 8401.528336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.213 3.787 3 H 0.040 0.960 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.525 5.525 13 C 0.032 3.968 14 C 0.122 3.878 15 C 0.102 3.898 16 C -0.249 4.249 17 S 0.059 5.941 18 C 0.148 3.852 19 C -0.133 4.133 20 C -0.197 4.197 21 C -0.033 4.033 22 O -0.178 6.178 23 C 0.036 3.964 24 N -0.446 5.446 25 H 0.006 0.994 26 H 0.032 0.968 27 H 0.089 0.911 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.207 0.793 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.195 -3.695 -19.390 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.107 3.893 3 H 0.058 0.942 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.249 5.249 13 C -0.117 4.117 14 C -0.009 4.009 15 C -0.031 4.031 16 C -0.388 4.388 17 S 0.315 5.685 18 C -0.128 4.128 19 C -0.138 4.138 20 C -0.218 4.218 21 C -0.100 4.100 22 O -0.073 6.073 23 C -0.037 4.037 24 N -0.160 5.160 25 H 0.025 0.975 26 H 0.051 0.949 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.192 0.808 35 H 0.172 0.828 36 H 0.223 0.777 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 8.106 -3.824 -19.703 21.646 hybrid contribution -1.425 -0.292 1.393 2.014 sum 6.680 -4.116 -18.311 19.921 Atomic orbital electron populations 1.22426 1.00813 0.99462 1.00555 1.19333 0.89719 0.94570 0.85698 0.94166 1.21052 1.30474 1.12473 0.89559 0.92058 1.24912 0.95256 0.95148 0.98940 1.69868 1.37135 1.23043 1.23491 0.86580 0.79275 0.79563 0.82090 1.20225 1.21405 1.20408 1.62300 1.58940 1.02268 1.01385 1.22284 0.96348 0.92055 1.00985 1.20636 0.95251 0.97732 0.87318 1.20231 0.88782 0.96483 0.97584 1.26688 1.04890 1.06793 1.00443 1.84635 1.05478 1.46836 1.31584 1.24726 0.96016 0.97495 0.94544 1.19097 0.90775 1.04440 0.99477 1.22758 0.94727 1.04638 0.99657 1.23859 0.98355 0.95022 0.92742 1.83931 1.36251 1.52864 1.34265 1.24452 0.82236 1.00130 0.96883 1.66441 1.11135 1.24293 1.14109 0.97461 0.94894 0.89233 0.92965 0.96218 0.94055 0.90932 0.93862 0.89680 0.80774 0.82814 0.77660 0.76510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.22 37.16 0.31 -3.85 16 2 C 0.21 5.37 2.31 -68.86 -0.16 5.21 16 3 H 0.04 1.12 7.93 -51.93 -0.41 0.70 16 4 C -0.50 -13.73 7.97 -34.44 -0.27 -14.01 16 5 H 0.06 1.71 7.10 -52.49 -0.37 1.34 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.57 4.69 -237.73 -1.12 -12.69 16 13 C 0.03 0.64 8.56 60.07 0.51 1.15 16 14 C 0.12 2.31 4.95 -4.98 -0.02 2.28 16 15 C 0.10 1.75 5.54 -84.38 -0.47 1.28 16 16 C -0.25 -3.63 9.68 29.09 0.28 -3.35 16 17 S 0.06 0.76 23.33 -107.50 -2.51 -1.75 16 18 C 0.15 2.21 7.50 -14.29 -0.11 2.10 16 19 C -0.13 -1.69 6.32 -103.26 -0.65 -2.34 16 20 C -0.20 -1.93 11.05 -37.49 -0.41 -2.34 16 21 C -0.03 -0.27 12.04 29.34 0.35 0.08 16 22 O -0.18 -1.84 10.55 6.76 0.07 -1.76 16 23 C 0.04 0.42 12.05 29.95 0.36 0.78 16 24 N -0.45 -7.79 10.53 -7.55 -0.08 -7.87 16 25 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 26 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.02 0.38 6.21 -51.93 -0.32 0.06 16 30 H 0.04 0.75 6.22 -51.93 -0.32 0.42 16 31 H 0.07 1.56 6.86 -51.93 -0.36 1.21 16 32 H 0.04 0.77 7.00 -51.93 -0.36 0.41 16 33 H 0.08 1.66 7.93 -51.93 -0.41 1.25 16 34 H 0.17 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.22 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -30.83 321.88 -7.94 -38.77 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.39 Total: 0.32 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -0.38 Total: -11.47 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.57 Total: -45.49 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: 0.07 Total: -1.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.83 -7.94 -38.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267928149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.729 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds