Wall clock time and date at job start Tue Mar 31 2020 06:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46907 * 110.99846 * 306.04564 * 12 2 1 14 14 C 1.46894 * 111.00206 * 70.00284 * 12 2 1 15 15 C 1.50700 * 109.47269 * 169.99805 * 14 12 2 16 16 C 1.33554 * 122.06943 * 95.00175 * 15 14 12 17 17 S 1.76244 * 108.25141 * 180.02562 * 16 15 14 18 18 C 1.76165 * 89.85484 * 359.97438 * 17 16 15 19 19 C 1.47860 * 125.47981 * 179.97438 * 18 17 16 20 20 C 1.46855 * 127.14339 * 359.73351 * 19 18 17 21 21 C 1.34304 * 106.01881 * 179.83014 * 20 19 18 22 22 O 1.34179 * 109.05228 * 0.44211 * 21 20 19 23 23 C 1.34033 * 110.79107 * 359.70160 * 22 21 20 24 24 N 1.30249 * 109.04532 * 359.74366 * 18 17 16 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46867 * 60.00675 * 13 12 2 30 30 H 1.08998 * 109.46750 * 180.02562 * 13 12 2 31 31 H 1.08994 * 109.46944 * 299.99912 * 13 12 2 32 32 H 1.08998 * 109.46955 * 290.00099 * 14 12 2 33 33 H 1.08998 * 109.47049 * 49.99909 * 14 12 2 34 34 H 1.08001 * 125.87063 * 359.97438 * 16 15 14 35 35 H 1.07998 * 126.99107 * 0.02562 * 20 19 18 36 36 H 1.07997 * 125.47688 * 180.14187 * 21 20 19 37 37 H 1.08006 * 125.78773 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5794 16 6 1.8825 -1.3766 -4.4098 17 16 3.0536 -1.8613 -5.6344 18 6 4.2629 -0.8245 -4.8820 19 6 5.6543 -0.6492 -5.3505 20 6 6.2887 -1.2953 -6.5066 21 6 7.5492 -0.8332 -6.5439 22 8 7.7349 0.0159 -5.5217 23 6 6.6145 0.1397 -4.7965 24 7 3.7328 -0.2334 -3.8495 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1619 3.4844 29 1 0.3490 -1.9549 -1.3694 30 1 1.8140 -2.5261 -2.2040 31 1 1.7059 -2.6221 -0.4301 32 1 0.6815 0.1053 -2.6087 33 1 2.1026 1.1188 -2.2603 34 1 0.8599 -1.7172 -4.3420 35 1 5.8333 -1.9967 -7.1900 36 1 8.2952 -1.1054 -7.2759 37 1 6.4944 0.7600 -3.9206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267928149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:05 Heat of formation + Delta-G solvation = 52.845500 kcal Electronic energy + Delta-G solvation = -20346.835730 eV Core-core repulsion = 17217.465188 eV Total energy + Delta-G solvation = -3129.370542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.33880 -40.85139 -38.63054 -35.01883 -34.26735 -32.08405 -30.67347 -29.79832 -28.65506 -27.28837 -26.24427 -25.13109 -22.58760 -22.09112 -21.04371 -19.94040 -19.19466 -18.25887 -17.97232 -17.15820 -16.94426 -16.36215 -16.27737 -15.64398 -15.30179 -15.10224 -14.91396 -14.36160 -14.22426 -14.01094 -13.78364 -13.54826 -13.17598 -12.96356 -12.90960 -12.61413 -12.52282 -12.48563 -12.18246 -12.04323 -11.66623 -11.35197 -10.94804 -10.66828 -10.48658 -10.31988 -9.92279 -9.15824 -8.84561 -8.10250 -6.21112 -0.55114 0.32706 0.68475 0.88601 1.35800 1.42476 1.44291 1.51896 2.10702 2.12991 2.43954 2.95280 3.18559 3.52461 3.82691 3.87610 4.12295 4.22776 4.32386 4.47463 4.59508 4.60593 4.67404 4.72723 4.81203 4.87022 4.92243 5.05997 5.12224 5.14740 5.18854 5.40381 5.51783 5.70291 5.79256 6.09879 6.20111 6.47598 6.68562 6.82945 6.90984 7.47793 8.95577 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.003700 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.725375 B = 7564.735559 C = 8401.528336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.218 3.782 3 H 0.004 0.996 4 C -0.515 4.515 5 H 0.052 0.948 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.541 5.541 13 C 0.041 3.959 14 C 0.128 3.872 15 C 0.076 3.924 16 C -0.250 4.250 17 S 0.127 5.873 18 C 0.134 3.866 19 C -0.161 4.161 20 C -0.210 4.210 21 C -0.016 4.016 22 O -0.183 6.183 23 C 0.027 3.973 24 N -0.486 5.486 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.196 0.804 35 H 0.173 0.827 36 H 0.252 0.748 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 -5.421 -21.346 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.111 3.889 3 H 0.022 0.978 4 C -0.553 4.553 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.264 5.264 13 C -0.107 4.107 14 C -0.003 4.003 15 C -0.056 4.056 16 C -0.389 4.389 17 S 0.384 5.616 18 C -0.141 4.141 19 C -0.166 4.166 20 C -0.231 4.231 21 C -0.082 4.082 22 O -0.078 6.078 23 C -0.046 4.046 24 N -0.201 5.201 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.213 0.787 35 H 0.191 0.809 36 H 0.268 0.732 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.779 -5.563 -21.686 24.048 hybrid contribution -1.548 0.237 1.844 2.419 sum 7.231 -5.326 -19.842 21.780 Atomic orbital electron populations 1.22205 0.99811 0.99536 1.00209 1.19062 0.90343 0.92714 0.86759 0.97768 1.21303 1.30625 1.12429 0.90961 0.92992 1.25656 0.95386 0.95811 1.01692 1.69995 1.37850 1.24069 1.24099 0.85613 0.78587 0.78760 0.78663 1.20131 1.20788 1.19570 1.62140 1.59541 1.03196 1.01562 1.22200 0.96765 0.90779 1.01002 1.20505 0.96219 0.96597 0.86933 1.19941 0.89289 0.98326 0.98016 1.26967 1.06174 1.05515 1.00272 1.84331 1.03047 1.44824 1.29445 1.25116 0.97305 0.97483 0.94177 1.19404 0.90250 1.05830 1.01136 1.23015 0.95258 1.05487 0.99290 1.24756 0.98759 0.92790 0.91849 1.83951 1.35670 1.53379 1.34783 1.24503 0.82667 1.00233 0.97211 1.66385 1.11689 1.26089 1.15975 0.95361 0.94412 0.91906 0.92912 0.95369 0.91936 0.92899 0.92638 0.91569 0.78739 0.80939 0.73200 0.76710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.66 8.22 71.98 0.59 -7.07 16 2 C 0.22 11.35 2.31 44.17 0.10 11.45 16 3 H 0.00 0.26 7.93 -2.39 -0.02 0.24 16 4 C -0.51 -29.09 7.97 25.60 0.20 -28.89 16 5 H 0.05 2.97 7.10 -2.91 -0.02 2.95 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.52 11.32 21.45 0.24 -53.28 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.54 -24.22 4.69 -906.05 -4.25 -28.47 16 13 C 0.04 1.61 8.56 127.69 1.09 2.70 16 14 C 0.13 4.93 4.95 85.56 0.42 5.35 16 15 C 0.08 2.61 5.54 41.55 0.23 2.84 16 16 C -0.25 -6.81 9.68 66.76 0.65 -6.17 16 17 S 0.13 2.96 23.33 -56.49 -1.32 1.64 16 18 C 0.13 3.91 7.50 87.48 0.66 4.57 16 19 C -0.16 -3.96 6.32 -18.98 -0.12 -4.08 16 20 C -0.21 -3.59 11.05 23.63 0.26 -3.33 16 21 C -0.02 -0.21 12.04 66.92 0.81 0.59 16 22 O -0.18 -3.49 10.55 1.29 0.01 -3.48 16 23 C 0.03 0.63 12.05 67.31 0.81 1.44 16 24 N -0.49 -17.17 10.53 -177.81 -1.87 -19.04 16 25 H 0.03 1.20 6.91 -2.39 -0.02 1.18 16 26 H 0.04 1.74 6.33 -2.39 -0.02 1.73 16 27 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.03 1.05 6.21 -2.39 -0.01 1.04 16 30 H 0.06 2.18 6.22 -2.39 -0.01 2.16 16 31 H 0.05 2.27 6.86 -2.39 -0.02 2.26 16 32 H 0.06 1.95 7.00 -2.39 -0.02 1.94 16 33 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 34 H 0.20 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.25 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.22 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -67.85 321.88 2.08 -65.77 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.09 Total: 9.68 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 6.15 Total: -19.41 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -5.88 Total: -100.79 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: 0.01 Total: -3.48 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.32 Total: 1.64 kcal Total: -67.85 2.08 -65.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267928149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.613 kcal (2) G-P(sol) polarization free energy of solvation -67.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds