Wall clock time and date at job start Tue Mar 31 2020 06:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46962 * 2 1 4 4 C 1.50695 * 109.47246 * 240.00139 * 2 1 3 5 5 H 1.08006 * 120.00186 * 240.00364 * 4 2 1 6 6 C 1.37874 * 120.00268 * 59.99515 * 4 2 1 7 7 N 1.31518 * 119.99742 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00328 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47520 * 60.00045 * 8 6 4 10 10 H 1.48501 * 109.47444 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46870 * 300.00154 * 8 6 4 12 12 N 1.46903 * 109.47101 * 120.00249 * 2 1 3 13 13 C 1.46905 * 110.99682 * 176.05029 * 12 2 1 14 14 C 1.46906 * 110.99911 * 299.99493 * 12 2 1 15 15 C 1.50699 * 109.47009 * 170.00262 * 14 12 2 16 16 C 1.33546 * 122.06949 * 95.00776 * 15 14 12 17 17 S 1.76253 * 108.25408 * 179.79234 * 16 15 14 18 18 C 1.76177 * 89.84677 * 0.28478 * 17 16 15 19 19 C 1.47870 * 125.47444 * 179.97438 * 18 17 16 20 20 C 1.46850 * 127.14236 * 359.93615 * 19 18 17 21 21 C 1.34305 * 106.01563 * 180.14085 * 20 19 18 22 22 O 1.34173 * 109.05258 * 359.63032 * 21 20 19 23 23 C 1.34038 * 110.79709 * 0.24892 * 22 21 20 24 24 N 1.30235 * 109.04692 * 359.71004 * 18 17 16 25 25 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47257 * 299.99740 * 1 2 3 27 27 H 1.08993 * 109.47299 * 60.00009 * 1 2 3 28 28 H 0.97003 * 119.99869 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46435 * 183.95261 * 13 12 2 30 30 H 1.08998 * 109.46918 * 303.94625 * 13 12 2 31 31 H 1.08991 * 109.47390 * 63.94916 * 13 12 2 32 32 H 1.09004 * 109.46521 * 50.00540 * 14 12 2 33 33 H 1.09000 * 109.47239 * 290.00486 * 14 12 2 34 34 H 1.07995 * 125.87657 * 359.97438 * 16 15 14 35 35 H 1.08002 * 126.99719 * 0.04537 * 20 19 18 36 36 H 1.08002 * 125.47797 * 179.90409 * 21 20 19 37 37 H 1.07995 * 125.79343 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 7 2.0196 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8911 3.6159 16 6 2.9633 -0.7224 4.3462 17 16 2.9548 -1.9147 5.6442 18 6 1.4208 -2.5446 5.0491 19 6 0.6653 -3.6675 5.6447 20 6 1.0381 -4.4613 6.8226 21 6 0.0580 -5.3649 6.9859 22 8 -0.8663 -5.1861 6.0299 23 6 -0.5222 -4.1766 5.2180 24 7 1.0566 -1.8586 4.0037 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7094 1.1617 -3.4844 29 1 3.8164 -1.3721 2.0500 30 1 3.8070 -1.2915 0.2719 31 1 3.9192 0.2043 1.2300 32 1 0.4722 0.1323 2.3564 33 1 2.0519 0.9346 2.5280 34 1 3.7292 0.0191 4.1731 35 1 1.9216 -4.3436 7.4325 36 1 0.0178 -6.1123 7.7645 37 1 -1.0912 -3.8263 4.3696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267928151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:07 Heat of formation + Delta-G solvation = 73.560724 kcal Electronic energy + Delta-G solvation = -20364.709152 eV Core-core repulsion = 17236.236889 eV Total energy + Delta-G solvation = -3128.472263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.55912 -39.59105 -36.73609 -33.67941 -32.72572 -30.84939 -29.49195 -28.76816 -27.37090 -25.25152 -24.50623 -23.23782 -21.83538 -20.91096 -19.51540 -18.86816 -18.23201 -16.98321 -16.27239 -16.16826 -15.41732 -15.28592 -14.49740 -14.43801 -13.99130 -13.61820 -13.39008 -13.21982 -13.09049 -12.58839 -12.42123 -12.28983 -11.80546 -11.44739 -11.08498 -10.97813 -10.72909 -10.55530 -10.31636 -10.09691 -10.02038 -9.84477 -9.51963 -9.33705 -9.05559 -8.85725 -8.41528 -8.10365 -7.17312 -5.99920 -4.04291 0.52571 1.39816 1.67519 1.81755 2.29229 2.85734 3.24533 3.33389 3.37522 3.41049 3.93724 4.42701 4.64291 4.74266 5.05262 5.14044 5.31011 5.33820 5.39909 5.52895 5.62972 5.90430 5.96172 6.07978 6.15221 6.21972 6.37999 6.40650 6.77740 6.87018 6.88460 7.09290 7.16378 7.52652 7.71998 7.83901 7.95592 8.21921 8.32909 8.59495 9.01446 9.60403 11.06888 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.003640 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.065172 B = 7690.044723 C = 8276.086653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.214 3.786 3 H -0.001 1.001 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.528 5.528 13 C 0.035 3.965 14 C 0.117 3.883 15 C 0.102 3.898 16 C -0.249 4.249 17 S 0.059 5.941 18 C 0.148 3.852 19 C -0.132 4.132 20 C -0.198 4.198 21 C -0.033 4.033 22 O -0.178 6.178 23 C 0.036 3.964 24 N -0.445 5.445 25 H 0.036 0.964 26 H 0.009 0.991 27 H 0.085 0.915 28 H 0.261 0.739 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.010 0.990 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.207 0.793 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 -7.546 19.673 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.109 3.891 3 H 0.017 0.983 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.253 5.253 13 C -0.114 4.114 14 C -0.014 4.014 15 C -0.030 4.030 16 C -0.388 4.388 17 S 0.314 5.686 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.218 4.218 21 C -0.100 4.100 22 O -0.073 6.073 23 C -0.037 4.037 24 N -0.159 5.159 25 H 0.055 0.945 26 H 0.028 0.972 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.192 0.808 35 H 0.172 0.828 36 H 0.223 0.777 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.490 -8.381 20.049 21.736 hybrid contribution 0.915 1.082 -1.505 2.067 sum 1.405 -7.299 18.544 19.978 Atomic orbital electron populations 1.21855 0.97570 0.99857 0.99821 1.19259 0.92460 0.91911 0.85516 0.98344 1.21104 1.31095 1.12281 0.89702 0.91922 1.24919 0.95198 0.95081 0.98970 1.69885 1.36886 1.22999 1.23520 0.86578 0.79041 0.79807 0.82082 1.20201 1.21348 1.20375 1.62088 1.09261 1.52585 1.01324 1.22270 0.88786 0.98695 1.01622 1.20744 1.02280 0.91680 0.86709 1.20219 0.90136 0.94754 0.97922 1.26694 1.04569 1.06838 1.00704 1.84637 1.23396 1.29306 1.31263 1.24727 0.94749 0.98450 0.94885 1.19099 0.96927 0.98504 0.99215 1.22759 1.02028 0.98104 0.98896 1.23859 0.89222 1.02394 0.94494 1.83928 1.44340 1.44624 1.34426 1.24446 0.96002 0.87845 0.95447 1.66427 1.32024 1.06413 1.11046 0.94506 0.97247 0.89627 0.92926 0.94002 0.90328 0.97101 0.88853 0.94279 0.80780 0.82812 0.77658 0.76532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.76 37.16 0.33 -2.97 16 2 C 0.21 5.47 2.06 -68.87 -0.14 5.32 16 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 4 C -0.50 -13.90 7.88 -34.44 -0.27 -14.17 16 5 H 0.06 1.73 6.41 -52.48 -0.34 1.40 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.53 -11.74 4.61 -237.72 -1.10 -12.84 16 13 C 0.03 0.71 8.97 60.07 0.54 1.25 16 14 C 0.12 2.24 5.20 -4.97 -0.03 2.21 16 15 C 0.10 1.77 5.53 -84.39 -0.47 1.30 16 16 C -0.25 -3.66 9.78 29.09 0.28 -3.37 16 17 S 0.06 0.76 23.33 -107.50 -2.51 -1.75 16 18 C 0.15 2.21 7.50 -14.29 -0.11 2.10 16 19 C -0.13 -1.69 6.32 -103.26 -0.65 -2.34 16 20 C -0.20 -1.93 11.05 -37.49 -0.41 -2.34 16 21 C -0.03 -0.27 12.04 29.34 0.35 0.08 16 22 O -0.18 -1.83 10.54 6.77 0.07 -1.76 16 23 C 0.04 0.41 12.05 29.95 0.36 0.77 16 24 N -0.45 -7.79 10.53 -7.55 -0.08 -7.87 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.01 0.20 6.20 -51.93 -0.32 -0.13 16 27 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.04 0.77 6.45 -51.93 -0.34 0.43 16 30 H 0.08 1.71 6.10 -51.93 -0.32 1.40 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 1.85 5.83 -51.93 -0.30 1.55 16 33 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 34 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.22 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -30.98 323.74 -7.88 -38.86 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.44 Total: -0.46 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.31 Total: -10.60 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.55 Total: -45.61 kcal Atomic # 8 Polarization: -1.83 SS G_CDS: 0.07 Total: -1.76 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.98 -7.88 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267928151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.424 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds