Wall clock time and date at job start Tue Mar 31 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46962 * 2 1 4 4 C 1.50695 * 109.47246 * 240.00139 * 2 1 3 5 5 H 1.08006 * 120.00186 * 240.00364 * 4 2 1 6 6 C 1.37874 * 120.00268 * 59.99515 * 4 2 1 7 7 N 1.31518 * 119.99742 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00328 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47520 * 60.00045 * 8 6 4 10 10 H 1.48501 * 109.47444 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46870 * 300.00154 * 8 6 4 12 12 N 1.46903 * 109.47101 * 120.00249 * 2 1 3 13 13 C 1.46905 * 110.99682 * 176.05029 * 12 2 1 14 14 C 1.46906 * 110.99911 * 299.99493 * 12 2 1 15 15 C 1.50699 * 109.47009 * 170.00262 * 14 12 2 16 16 C 1.33546 * 122.06949 * 95.00776 * 15 14 12 17 17 S 1.76253 * 108.25408 * 179.79234 * 16 15 14 18 18 C 1.76177 * 89.84677 * 0.28478 * 17 16 15 19 19 C 1.47870 * 125.47444 * 179.97438 * 18 17 16 20 20 C 1.46850 * 127.14236 * 359.93615 * 19 18 17 21 21 C 1.34305 * 106.01563 * 180.14085 * 20 19 18 22 22 O 1.34173 * 109.05258 * 359.63032 * 21 20 19 23 23 C 1.34038 * 110.79709 * 0.24892 * 22 21 20 24 24 N 1.30235 * 109.04692 * 359.71004 * 18 17 16 25 25 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47257 * 299.99740 * 1 2 3 27 27 H 1.08993 * 109.47299 * 60.00009 * 1 2 3 28 28 H 0.97003 * 119.99869 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46435 * 183.95261 * 13 12 2 30 30 H 1.08998 * 109.46918 * 303.94625 * 13 12 2 31 31 H 1.08991 * 109.47390 * 63.94916 * 13 12 2 32 32 H 1.09004 * 109.46521 * 50.00540 * 14 12 2 33 33 H 1.09000 * 109.47239 * 290.00486 * 14 12 2 34 34 H 1.07995 * 125.87657 * 359.97438 * 16 15 14 35 35 H 1.08002 * 126.99719 * 0.04537 * 20 19 18 36 36 H 1.08002 * 125.47797 * 179.90409 * 21 20 19 37 37 H 1.07995 * 125.79343 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 7 2.0196 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8911 3.6159 16 6 2.9633 -0.7224 4.3462 17 16 2.9548 -1.9147 5.6442 18 6 1.4208 -2.5446 5.0491 19 6 0.6653 -3.6675 5.6447 20 6 1.0381 -4.4613 6.8226 21 6 0.0580 -5.3649 6.9859 22 8 -0.8663 -5.1861 6.0299 23 6 -0.5222 -4.1766 5.2180 24 7 1.0566 -1.8586 4.0037 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7094 1.1617 -3.4844 29 1 3.8164 -1.3721 2.0500 30 1 3.8070 -1.2915 0.2719 31 1 3.9192 0.2043 1.2300 32 1 0.4722 0.1323 2.3564 33 1 2.0519 0.9346 2.5280 34 1 3.7292 0.0191 4.1731 35 1 1.9216 -4.3436 7.4325 36 1 0.0178 -6.1123 7.7645 37 1 -1.0912 -3.8263 4.3696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267928151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:06 Heat of formation + Delta-G solvation = 53.475970 kcal Electronic energy + Delta-G solvation = -20365.580092 eV Core-core repulsion = 17236.236889 eV Total energy + Delta-G solvation = -3129.343203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.33565 -40.83647 -38.45829 -35.04707 -34.26156 -32.04620 -30.95186 -30.11252 -28.88645 -26.90665 -26.00062 -24.89523 -22.58508 -22.12662 -21.21896 -19.95017 -19.19937 -18.34645 -18.05660 -17.10661 -16.94403 -16.38563 -16.08941 -15.74502 -15.59427 -14.95731 -14.83705 -14.36980 -14.14929 -14.07035 -13.80699 -13.51544 -13.16799 -12.95835 -12.93835 -12.80530 -12.62321 -12.25445 -12.09488 -11.96824 -11.62355 -11.35854 -10.91661 -10.67048 -10.51987 -10.31898 -9.91611 -9.16032 -8.93121 -8.11359 -6.23192 -0.55065 0.32646 0.68255 0.88854 1.35840 1.42345 1.44309 1.51837 2.10679 2.13386 2.43023 2.94901 3.16751 3.48652 3.82798 3.87933 4.12663 4.21838 4.31583 4.46349 4.59565 4.61737 4.66035 4.71037 4.82898 4.94948 5.01416 5.04569 5.08126 5.19099 5.23921 5.40538 5.48524 5.70904 5.76499 6.10220 6.24272 6.36966 6.67627 6.82561 6.90189 7.45561 8.94508 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.003640 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.065172 B = 7690.044723 C = 8276.086653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.220 3.780 3 H -0.031 1.031 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.539 5.539 13 C 0.042 3.958 14 C 0.122 3.878 15 C 0.078 3.922 16 C -0.251 4.251 17 S 0.126 5.874 18 C 0.135 3.865 19 C -0.161 4.161 20 C -0.211 4.211 21 C -0.016 4.016 22 O -0.183 6.183 23 C 0.028 3.972 24 N -0.484 5.484 25 H 0.026 0.974 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.262 0.738 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.193 0.807 35 H 0.173 0.827 36 H 0.252 0.748 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -9.080 21.568 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.113 3.887 3 H -0.013 1.013 4 C -0.559 4.559 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.264 5.264 13 C -0.106 4.106 14 C -0.009 4.009 15 C -0.054 4.054 16 C -0.391 4.391 17 S 0.382 5.618 18 C -0.140 4.140 19 C -0.166 4.166 20 C -0.231 4.231 21 C -0.081 4.081 22 O -0.078 6.078 23 C -0.045 4.045 24 N -0.199 5.199 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.211 0.789 35 H 0.190 0.810 36 H 0.268 0.732 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.556 -9.924 21.974 24.161 hybrid contribution 0.587 1.501 -1.927 2.512 sum 2.143 -8.423 20.046 21.849 Atomic orbital electron populations 1.21663 0.97403 0.99050 0.99692 1.19037 0.92567 0.90361 0.86739 1.01306 1.21372 1.31293 1.12309 0.90941 0.92459 1.25690 0.95316 0.95749 1.01805 1.70009 1.37638 1.24102 1.24171 0.85586 0.78767 0.78600 0.78523 1.19940 1.20788 1.19568 1.61990 1.10401 1.52615 1.01373 1.22191 0.87743 0.99105 1.01566 1.20623 1.01359 0.92504 0.86370 1.19912 0.91635 0.95671 0.98218 1.26960 1.03920 1.07367 1.00839 1.84339 1.21139 1.27161 1.29120 1.25119 0.95965 0.98507 0.94402 1.19398 0.97598 0.98827 1.00790 1.23014 1.03442 0.98234 0.98395 1.24750 0.87575 1.02021 0.93801 1.83950 1.45014 1.44062 1.34747 1.24508 0.95978 0.88243 0.95803 1.66370 1.33284 1.07421 1.12801 0.95453 0.95186 0.91886 0.92853 0.91841 0.92211 0.96547 0.90272 0.93382 0.78942 0.80980 0.73219 0.76645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.14 8.76 71.98 0.63 -5.51 16 2 C 0.22 11.52 2.06 44.17 0.09 11.62 16 3 H -0.03 -1.75 8.14 -2.39 -0.02 -1.77 16 4 C -0.52 -29.33 7.88 25.60 0.20 -29.13 16 5 H 0.06 3.22 6.41 -2.91 -0.02 3.20 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.50 11.32 21.45 0.24 -53.26 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 N -0.54 -24.34 4.61 -906.02 -4.18 -28.52 16 13 C 0.04 1.71 8.97 127.69 1.14 2.86 16 14 C 0.12 4.72 5.20 85.56 0.44 5.17 16 15 C 0.08 2.67 5.53 41.55 0.23 2.90 16 16 C -0.25 -6.95 9.78 66.76 0.65 -6.30 16 17 S 0.13 2.95 23.33 -56.49 -1.32 1.63 16 18 C 0.13 3.91 7.50 87.48 0.66 4.57 16 19 C -0.16 -3.93 6.32 -18.98 -0.12 -4.05 16 20 C -0.21 -3.57 11.05 23.63 0.26 -3.31 16 21 C -0.02 -0.21 12.04 66.92 0.81 0.60 16 22 O -0.18 -3.44 10.54 1.30 0.01 -3.43 16 23 C 0.03 0.64 12.05 67.31 0.81 1.45 16 24 N -0.48 -16.94 10.53 -177.80 -1.87 -18.81 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.03 1.36 6.20 -2.39 -0.01 1.34 16 27 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 28 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.06 2.27 6.45 -2.39 -0.02 2.25 16 30 H 0.06 2.62 6.10 -2.39 -0.01 2.61 16 31 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 3.22 5.83 -2.38 -0.01 3.21 16 33 H 0.05 1.74 8.06 -2.39 -0.02 1.72 16 34 H 0.19 4.44 8.06 -2.91 -0.02 4.41 16 35 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.25 0.71 8.06 -2.91 -0.02 0.68 16 37 H 0.22 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -67.74 323.74 2.26 -65.49 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.09 Total: 8.52 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 6.26 Total: -17.94 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -5.81 Total: -100.59 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: 0.01 Total: -3.43 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.32 Total: 1.63 kcal Total: -67.74 2.26 -65.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267928151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.963 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds