Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46960 * 25.20425 * 3 2 1 5 5 C 1.37095 * 119.99950 * 263.86884 * 4 3 2 6 6 H 1.08001 * 119.99886 * 142.49965 * 5 4 3 7 7 C 1.38952 * 120.00210 * 322.49464 * 5 4 3 8 8 N 1.31406 * 119.99823 * 157.70484 * 7 5 4 9 9 Si 1.86795 * 120.00048 * 337.70879 * 7 5 4 10 10 H 1.48497 * 109.47228 * 95.70008 * 9 7 5 11 11 H 1.48496 * 109.47474 * 215.70351 * 9 7 5 12 12 H 1.48506 * 109.47104 * 335.70528 * 9 7 5 13 13 C 1.34780 * 119.99954 * 83.87616 * 4 3 2 14 14 O 1.21289 * 120.00144 * 179.97438 * 13 4 3 15 15 C 1.50699 * 119.99716 * 0.26607 * 13 4 3 16 16 C 1.53005 * 109.47106 * 179.72845 * 15 13 4 17 17 H 1.09003 * 109.47062 * 305.00400 * 16 15 13 18 18 O 1.42898 * 109.47042 * 65.00072 * 16 15 13 19 19 C 1.50693 * 109.47157 * 184.99912 * 16 15 13 20 20 C 1.38258 * 119.99157 * 279.72457 * 19 16 15 21 21 C 1.38231 * 120.05292 * 179.72673 * 20 19 16 22 22 C 1.38215 * 120.02268 * 0.54930 * 21 20 19 23 23 C 1.38443 * 119.97547 * 359.72960 * 22 21 20 24 24 F 1.35095 * 120.02345 * 180.02562 * 23 22 21 25 25 C 1.38181 * 119.98312 * 100.00608 * 19 16 15 26 26 H 1.08999 * 109.46709 * 265.20262 * 3 2 1 27 27 H 1.08994 * 109.46530 * 145.20584 * 3 2 1 28 28 H 0.97006 * 120.00085 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47548 * 299.72732 * 15 13 4 30 30 H 1.08998 * 109.46922 * 59.73195 * 15 13 4 31 31 H 0.96701 * 114.00401 * 59.99767 * 18 16 15 32 32 H 1.08003 * 119.97217 * 359.97438 * 20 19 16 33 33 H 1.07998 * 119.98330 * 180.27405 * 21 20 19 34 34 H 1.07996 * 120.00906 * 179.70046 * 22 21 20 35 35 H 1.08000 * 120.01620 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2488 -0.5882 5 6 3.4454 -2.2979 0.2227 6 1 3.2260 -3.3109 -0.0806 7 6 4.0810 -2.0578 1.4348 8 7 4.0287 -2.9554 2.3931 9 14 5.0095 -0.4592 1.7020 10 1 4.1279 0.5158 2.3930 11 1 6.2108 -0.7178 2.5358 12 1 5.4279 0.0956 0.3895 13 6 3.2041 -1.3670 -1.9265 14 8 3.6093 -2.4013 -2.4135 15 6 2.8269 -0.2116 -2.8175 16 6 3.0467 -0.6027 -4.2803 17 1 4.0747 -0.9387 -4.4161 18 8 2.1502 -1.6589 -4.6308 19 6 2.7872 0.5903 -5.1637 20 6 1.4901 0.9374 -5.4929 21 6 1.2503 2.0348 -6.2985 22 6 2.3080 2.7797 -6.7851 23 6 3.6076 2.4296 -6.4608 24 9 4.6421 3.1573 -6.9355 25 6 3.8462 1.3334 -5.6491 26 1 2.9713 0.0868 1.0241 27 1 2.9709 0.8447 -0.5864 28 1 4.4721 -2.7877 3.2395 29 1 1.7777 0.0394 -2.6623 30 1 3.4468 0.6515 -2.5752 31 1 1.2156 -1.4300 -4.5340 32 1 0.6632 0.3530 -5.1170 33 1 0.2364 2.3076 -6.5513 34 1 2.1207 3.6342 -7.4184 35 1 4.8597 1.0591 -5.3959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271781395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = -58.408134 kcal Electronic energy + Delta-G solvation = -22706.876862 eV Core-core repulsion = 19006.468824 eV Total energy + Delta-G solvation = -3700.408038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.08329 -39.99119 -38.93760 -36.82943 -36.13370 -34.69902 -32.42604 -32.09079 -30.69479 -29.77617 -27.80973 -25.71643 -23.83100 -23.02182 -21.32930 -19.31049 -18.61892 -18.02287 -16.85734 -16.64561 -16.44645 -16.18265 -16.08488 -15.77175 -15.39888 -15.14455 -14.28484 -13.89773 -13.89088 -13.76006 -13.45414 -13.22563 -12.93826 -12.64052 -12.56098 -12.40477 -12.09475 -11.94083 -11.75610 -11.63367 -11.49624 -10.96696 -10.91193 -10.57112 -10.10495 -10.06817 -9.29279 -9.23144 -8.94655 -8.68760 -8.08573 -6.53433 -4.14671 0.89358 0.95745 2.85310 2.95510 3.04791 3.10352 3.18328 3.31006 3.49450 3.92455 3.98931 4.17722 4.37185 4.46006 4.55934 4.60608 4.78201 4.87722 4.90659 5.00849 5.16157 5.20858 5.36170 5.47160 5.60339 5.61202 5.72941 5.79219 5.85258 5.90769 6.06302 6.34020 6.63677 7.33031 7.73119 7.88361 8.09200 8.29143 8.78097 9.10829 9.51123 10.58266 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.004353 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.499168 B = 6430.565305 C = 6654.687702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.205 3.795 3 C 0.178 3.822 4 N -0.466 5.466 5 C -0.324 4.324 6 H 0.110 0.890 7 C 0.062 3.938 8 N -0.854 5.854 9 Si 0.860 3.140 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.256 1.256 13 C 0.478 3.522 14 O -0.528 6.528 15 C -0.175 4.175 16 C 0.167 3.833 17 H 0.119 0.881 18 O -0.532 6.532 19 C -0.081 4.081 20 C -0.123 4.123 21 C -0.087 4.087 22 C -0.158 4.158 23 C 0.099 3.901 24 F -0.141 7.141 25 C -0.143 4.143 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.277 0.723 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.365 0.635 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 13.889 -13.165 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.114 4.114 3 C 0.051 3.949 4 N -0.190 5.190 5 C -0.450 4.450 6 H 0.127 0.873 7 C -0.145 4.145 8 N -0.489 5.489 9 Si 0.686 3.314 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.180 1.180 13 C 0.266 3.734 14 O -0.406 6.406 15 C -0.215 4.215 16 C 0.107 3.893 17 H 0.137 0.863 18 O -0.336 6.336 19 C -0.082 4.082 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.177 4.177 23 C 0.080 3.920 24 F -0.119 7.119 25 C -0.162 4.162 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.212 0.788 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.723 12.946 -13.362 18.803 hybrid contribution 0.591 1.425 0.566 1.643 sum -2.132 14.372 -12.796 19.360 Atomic orbital electron populations 1.81064 1.13176 1.08641 1.09170 1.30099 0.95833 0.92695 0.92749 1.19587 0.81045 0.91340 1.02966 1.43643 1.57763 1.12678 1.04879 1.19055 1.38417 0.88074 0.99498 0.87286 1.25376 0.96117 0.97783 0.95185 1.69750 1.39588 1.35933 1.03594 0.87204 0.81072 0.83661 0.79501 1.19748 1.20559 1.17985 1.20056 0.81715 0.89234 0.82401 1.90644 1.46726 1.29956 1.73229 1.22520 1.03485 0.99768 0.95768 1.20548 0.96217 0.83512 0.89050 0.86344 1.86795 1.18726 1.38515 1.89588 1.20622 0.93060 0.97063 0.97459 1.21013 0.96457 0.97549 0.99067 1.20977 0.98861 0.94370 0.96327 1.21147 0.91128 1.02224 1.03206 1.17684 0.84257 0.92266 0.97795 1.91502 1.57422 1.76311 1.86683 1.21035 1.00704 0.95325 0.99098 0.86795 0.87483 0.91276 0.89655 0.88473 0.78796 0.85357 0.84907 0.84853 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.48 18.54 42.15 0.78 -7.70 16 2 C 0.21 3.69 15.03 -20.76 -0.31 3.38 16 3 C 0.18 3.07 4.27 -6.83 -0.03 3.04 16 4 N -0.47 -10.03 2.16 -117.94 -0.25 -10.29 16 5 C -0.32 -8.46 9.36 -14.93 -0.14 -8.60 16 6 H 0.11 3.29 7.91 -52.49 -0.42 2.87 16 7 C 0.06 1.59 5.27 -17.47 -0.09 1.50 16 8 N -0.85 -23.27 13.96 55.50 0.77 -22.50 16 9 Si 0.86 17.81 25.04 -169.99 -4.26 13.55 16 10 H -0.27 -5.08 6.69 56.52 0.38 -4.70 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 13 C 0.48 9.81 7.44 -10.98 -0.08 9.73 16 14 O -0.53 -13.07 15.29 -8.86 -0.14 -13.20 16 15 C -0.17 -2.51 3.97 -27.88 -0.11 -2.62 16 16 C 0.17 2.29 2.75 -27.88 -0.08 2.22 16 17 H 0.12 1.77 7.82 -51.93 -0.41 1.37 16 18 O -0.53 -8.13 12.42 -49.64 -0.62 -8.74 16 19 C -0.08 -0.92 4.97 -104.64 -0.52 -1.44 16 20 C -0.12 -1.18 9.32 -39.58 -0.37 -1.55 16 21 C -0.09 -0.74 10.04 -39.59 -0.40 -1.14 16 22 C -0.16 -1.44 10.03 -39.51 -0.40 -1.84 16 23 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 24 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 25 C -0.14 -1.57 9.65 -39.51 -0.38 -1.95 16 26 H 0.11 2.05 3.60 -51.93 -0.19 1.86 16 27 H 0.11 1.35 6.69 -51.93 -0.35 1.00 16 28 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.09 1.10 7.50 -51.93 -0.39 0.72 16 30 H 0.10 1.15 7.41 -51.93 -0.38 0.76 16 31 H 0.37 4.20 7.49 45.56 0.34 4.54 16 32 H 0.13 1.03 6.77 -52.48 -0.36 0.68 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.14 1.39 8.04 -52.49 -0.42 0.97 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -32.10 312.62 -4.72 -36.82 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -2.57 Total: 7.42 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -3.19 Total: 1.50 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 1.30 Total: -40.48 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.75 Total: -21.95 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -4.26 Total: 13.55 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.10 -4.72 -36.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271781395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.587 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds