Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46960 * 25.20425 * 3 2 1 5 5 C 1.37095 * 119.99950 * 263.86884 * 4 3 2 6 6 H 1.08001 * 119.99886 * 142.49965 * 5 4 3 7 7 C 1.38952 * 120.00210 * 322.49464 * 5 4 3 8 8 N 1.31406 * 119.99823 * 157.70484 * 7 5 4 9 9 Si 1.86795 * 120.00048 * 337.70879 * 7 5 4 10 10 H 1.48497 * 109.47228 * 95.70008 * 9 7 5 11 11 H 1.48496 * 109.47474 * 215.70351 * 9 7 5 12 12 H 1.48506 * 109.47104 * 335.70528 * 9 7 5 13 13 C 1.34780 * 119.99954 * 83.87616 * 4 3 2 14 14 O 1.21289 * 120.00144 * 179.97438 * 13 4 3 15 15 C 1.50699 * 119.99716 * 0.26607 * 13 4 3 16 16 C 1.53005 * 109.47106 * 179.72845 * 15 13 4 17 17 H 1.09003 * 109.47062 * 305.00400 * 16 15 13 18 18 O 1.42898 * 109.47042 * 65.00072 * 16 15 13 19 19 C 1.50693 * 109.47157 * 184.99912 * 16 15 13 20 20 C 1.38258 * 119.99157 * 279.72457 * 19 16 15 21 21 C 1.38231 * 120.05292 * 179.72673 * 20 19 16 22 22 C 1.38215 * 120.02268 * 0.54930 * 21 20 19 23 23 C 1.38443 * 119.97547 * 359.72960 * 22 21 20 24 24 F 1.35095 * 120.02345 * 180.02562 * 23 22 21 25 25 C 1.38181 * 119.98312 * 100.00608 * 19 16 15 26 26 H 1.08999 * 109.46709 * 265.20262 * 3 2 1 27 27 H 1.08994 * 109.46530 * 145.20584 * 3 2 1 28 28 H 0.97006 * 120.00085 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47548 * 299.72732 * 15 13 4 30 30 H 1.08998 * 109.46922 * 59.73195 * 15 13 4 31 31 H 0.96701 * 114.00401 * 59.99767 * 18 16 15 32 32 H 1.08003 * 119.97217 * 359.97438 * 20 19 16 33 33 H 1.07998 * 119.98330 * 180.27405 * 21 20 19 34 34 H 1.07996 * 120.00906 * 179.70046 * 22 21 20 35 35 H 1.08000 * 120.01620 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2488 -0.5882 5 6 3.4454 -2.2979 0.2227 6 1 3.2260 -3.3109 -0.0806 7 6 4.0810 -2.0578 1.4348 8 7 4.0287 -2.9554 2.3931 9 14 5.0095 -0.4592 1.7020 10 1 4.1279 0.5158 2.3930 11 1 6.2108 -0.7178 2.5358 12 1 5.4279 0.0956 0.3895 13 6 3.2041 -1.3670 -1.9265 14 8 3.6093 -2.4013 -2.4135 15 6 2.8269 -0.2116 -2.8175 16 6 3.0467 -0.6027 -4.2803 17 1 4.0747 -0.9387 -4.4161 18 8 2.1502 -1.6589 -4.6308 19 6 2.7872 0.5903 -5.1637 20 6 1.4901 0.9374 -5.4929 21 6 1.2503 2.0348 -6.2985 22 6 2.3080 2.7797 -6.7851 23 6 3.6076 2.4296 -6.4608 24 9 4.6421 3.1573 -6.9355 25 6 3.8462 1.3334 -5.6491 26 1 2.9713 0.0868 1.0241 27 1 2.9709 0.8447 -0.5864 28 1 4.4721 -2.7877 3.2395 29 1 1.7777 0.0394 -2.6623 30 1 3.4468 0.6515 -2.5752 31 1 1.2156 -1.4300 -4.5340 32 1 0.6632 0.3530 -5.1170 33 1 0.2364 2.3076 -6.5513 34 1 2.1207 3.6342 -7.4184 35 1 4.8597 1.0591 -5.3959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271781395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = -80.706583 kcal Electronic energy + Delta-G solvation = -22707.843795 eV Core-core repulsion = 19006.468824 eV Total energy + Delta-G solvation = -3701.374971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.88337 -41.18281 -40.15864 -38.07659 -37.50319 -36.36709 -34.20193 -33.16483 -31.49045 -30.84430 -29.33407 -27.23226 -25.11067 -23.74446 -22.27237 -20.85562 -20.28463 -19.00289 -18.38648 -17.67892 -17.58692 -17.31545 -17.10881 -16.83357 -16.57582 -16.33203 -15.50250 -15.34501 -15.15652 -14.94472 -14.61521 -14.54130 -14.27553 -14.08733 -13.88568 -13.57612 -13.32305 -13.10949 -12.96071 -12.71177 -12.59498 -12.53303 -12.16168 -11.91865 -11.76873 -11.15791 -11.07980 -10.46050 -9.94225 -9.92727 -9.65595 -8.47083 -6.15751 0.14354 0.23422 1.26221 1.41053 1.48328 1.54227 1.73382 1.92499 2.24000 2.54254 2.73685 2.84421 3.17606 3.21990 3.52040 3.60306 3.77654 3.85168 3.99566 4.11956 4.14023 4.21051 4.28671 4.34745 4.47541 4.65425 4.78012 4.90020 5.09728 5.16437 5.35960 5.50297 5.51082 5.92036 6.07141 6.43887 6.52037 6.80169 6.93053 7.21504 7.79508 8.69995 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.004353 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.499168 B = 6430.565305 C = 6654.687702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.219 3.781 3 C 0.176 3.824 4 N -0.477 5.477 5 C -0.341 4.341 6 H 0.041 0.959 7 C 0.011 3.989 8 N -0.910 5.910 9 Si 0.930 3.070 10 H -0.227 1.227 11 H -0.290 1.290 12 H -0.229 1.229 13 C 0.474 3.526 14 O -0.583 6.583 15 C -0.161 4.161 16 C 0.170 3.830 17 H 0.097 0.903 18 O -0.559 6.559 19 C -0.088 4.088 20 C -0.123 4.123 21 C -0.082 4.082 22 C -0.153 4.153 23 C 0.082 3.918 24 F -0.149 7.149 25 C -0.151 4.151 26 H 0.114 0.886 27 H 0.169 0.831 28 H 0.281 0.719 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.380 0.620 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 18.189 -14.077 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.100 4.100 3 C 0.050 3.950 4 N -0.200 5.200 5 C -0.469 4.469 6 H 0.059 0.941 7 C -0.192 4.192 8 N -0.547 5.547 9 Si 0.750 3.250 10 H -0.152 1.152 11 H -0.217 1.217 12 H -0.151 1.151 13 C 0.264 3.736 14 O -0.464 6.464 15 C -0.201 4.201 16 C 0.111 3.889 17 H 0.115 0.885 18 O -0.366 6.366 19 C -0.089 4.089 20 C -0.141 4.141 21 C -0.100 4.100 22 C -0.171 4.171 23 C 0.063 3.937 24 F -0.128 7.128 25 C -0.170 4.170 26 H 0.131 0.869 27 H 0.186 0.814 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.153 0.847 31 H 0.229 0.771 32 H 0.162 0.838 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.358 17.279 -14.284 22.669 hybrid contribution 0.701 -0.044 0.775 1.046 sum -2.657 17.235 -13.509 22.059 Atomic orbital electron populations 1.81089 1.13940 1.09327 1.10008 1.30154 0.95847 0.91950 0.92013 1.19932 0.80383 0.90777 1.03860 1.43671 1.58269 1.13064 1.05028 1.18567 1.40330 0.87249 1.00758 0.94123 1.26278 0.96115 1.02781 0.93990 1.69893 1.40940 1.39368 1.04503 0.86102 0.79126 0.78871 0.80853 1.15176 1.21709 1.15146 1.21163 0.79856 0.90085 0.82502 1.90619 1.48769 1.32697 1.74266 1.22518 1.05382 0.97767 0.94453 1.20395 0.95045 0.84165 0.89326 0.88508 1.86757 1.20082 1.39960 1.89794 1.20275 0.93996 0.96368 0.98236 1.21271 0.96111 0.97921 0.98838 1.21318 1.00151 0.93368 0.95145 1.21473 0.90440 1.02606 1.02609 1.17871 0.84843 0.92545 0.98489 1.91481 1.57943 1.76479 1.86851 1.21091 1.00870 0.95614 0.99430 0.86903 0.81365 0.90940 0.87381 0.84674 0.77149 0.83802 0.81878 0.82747 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.85 18.54 20.01 0.37 -16.47 16 2 C 0.22 7.26 15.03 89.44 1.34 8.60 16 3 C 0.18 5.44 4.27 84.57 0.36 5.80 16 4 N -0.48 -20.20 2.16 -645.43 -1.39 -21.59 16 5 C -0.34 -18.61 9.36 84.04 0.79 -17.83 16 6 H 0.04 2.70 7.91 -2.91 -0.02 2.67 16 7 C 0.01 0.57 5.27 84.93 0.45 1.01 16 8 N -0.91 -51.72 13.96 21.66 0.30 -51.42 16 9 Si 0.93 35.11 25.04 68.60 1.72 36.82 16 10 H -0.23 -7.07 6.69 99.48 0.67 -6.40 16 11 H -0.29 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.23 -7.63 7.11 99.48 0.71 -6.92 16 13 C 0.47 19.24 7.44 87.66 0.65 19.89 16 14 O -0.58 -30.04 15.29 10.72 0.16 -29.88 16 15 C -0.16 -4.17 3.97 29.85 0.12 -4.05 16 16 C 0.17 4.47 2.75 29.85 0.08 4.55 16 17 H 0.10 2.92 7.82 -2.39 -0.02 2.90 16 18 O -0.56 -16.87 12.42 -135.21 -1.68 -18.55 16 19 C -0.09 -1.77 4.97 -19.88 -0.10 -1.87 16 20 C -0.12 -1.95 9.32 22.27 0.21 -1.74 16 21 C -0.08 -1.05 10.04 22.26 0.22 -0.82 16 22 C -0.15 -2.23 10.03 22.31 0.22 -2.01 16 23 C 0.08 1.56 7.30 22.38 0.16 1.73 16 24 F -0.15 -3.15 17.27 44.97 0.78 -2.38 16 25 C -0.15 -3.03 9.65 22.31 0.22 -2.82 16 26 H 0.11 3.58 3.60 -2.39 -0.01 3.57 16 27 H 0.17 3.13 6.69 -2.39 -0.02 3.11 16 28 H 0.28 14.58 8.31 -92.70 -0.77 13.81 16 29 H 0.11 2.36 7.50 -2.39 -0.02 2.35 16 30 H 0.14 2.50 7.41 -2.39 -0.02 2.48 16 31 H 0.38 8.27 7.49 -74.06 -0.56 7.72 16 32 H 0.14 1.77 6.77 -2.91 -0.02 1.75 16 33 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.14 2.65 8.04 -2.91 -0.02 2.63 16 Total: -1.00 -77.05 312.62 5.55 -71.50 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.56 Total: 21.52 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 4.73 Total: 10.44 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -0.72 Total: -89.49 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -1.52 Total: -48.43 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 1.72 Total: 36.82 kcal Total: -77.05 5.55 -71.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271781395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.204 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds